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30182 Commits

Author SHA1 Message Date
Paul Garlick
cd3681a237
gnu: python-petsc4py: Update to 3.10.0. 
* gnu/packages/maths.scm (python-petsc4py): Update to 3.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:27:15 +01:00
Paul Garlick
e93da160ca
gnu: slepc: Update to 3.10.1. 
* gnu/packages/maths.scm (slepc): Update to 3.10.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:27:15 +01:00
Paul Garlick
e6951e4ee0
gnu: petsc: Update to 3.10.2 
* gnu/packages/maths.scm (petsc): Update to 3.10.2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:27:15 +01:00
Luther Thompson
dc240b6aa5
gnu: python-ilinkedlist: Update to 0.4.0. 
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.4.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:17:23 +01:00
Ludovic Courtès
c491f7f8de
gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase. 
* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of
'system*'.  Add 'mpi-setup' phase.
(pt-scotch32)[arguments]: Likewise.
 2018-11-23 18:44:47 +01:00
Ricardo Wurmus
d57ec906ba
gnu: pigx-scrnaseq: Use latest snakemake. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4
with snakemake.
 2018-11-23 16:30:48 +01:00
Ricardo Wurmus
92d9a1e2c6
gnu: pigx-bsseq: Use latest snakemake. 
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4
with snakemake.
 2018-11-23 16:30:16 +01:00
Ricardo Wurmus
c068d00746
gnu: pigx-chipseq: Use latest snakemake. 
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4
with snakemake.
 2018-11-23 16:29:35 +01:00
Ricardo Wurmus
936ea3d664
gnu: python-gevent: Update to 1.3.7. 
* gnu/packages/python.scm (python-gevent): Update to 1.3.7.
[arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources".
[propagated-inputs]: Add python-objgraph.
 2018-11-23 16:01:21 +01:00
Ricardo Wurmus
72ffb51231
gnu: Add python-objgraph. 
* gnu/packages/python.scm (python-objgraph): New variable.
 2018-11-23 16:01:07 +01:00
Ricardo Wurmus
93d229cb86
gnu: python-loompy: Remove python-typing. 
* gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove
python-typing.
 2018-11-23 15:59:44 +01:00
Alex Vong
332443d429
gnu: emacs-picpocket: Update to 40. 
Fix version string as well:
<https://lists.gnu.org/archive/html/guix-devel/2018-11/msg00286.html>.

* gnu/packages/emacs.scm (emacs-picpocket): Update to 40.
 2018-11-23 22:37:12 +08:00
Rutger Helling
a605e3c68c
gnu: xpra: Update to 2.4.2. 
* gnu/packages/xorg.scm (xpra): Update to 2.4.2.
 2018-11-23 13:59:36 +01:00
Vagrant Cascadian
74e35e8c94
gnu: Add u-boot-pinebook. 
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch: New file.
* gnu/packages/patches/u-boot-pinebook-syscon-node.patch: New file.
* gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch: New file.
* gnu/packages/patches/u-boot-pinebook-video-bridge.patch: New file.
* gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch: New file.
* gnu/packages/patches/u-boot-pinebook-dts.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/bootloaders.scm (u-boot-pinebook): New exported variable.
* gnu/bootloader/u-boot.scm (u-boot-pinebook-bootloader): New exported
variable.
* gnu/system/install.scm (pinebook-installation-os): New exported variable.
 2018-11-22 21:59:05 +01:00
Ricardo Wurmus
37751b480f
gnu: podofo: Add patch to fix build. 
* gnu/packages/patches/podofo-cmake-3.12.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (podofo)[source]: Add patch.
 2018-11-22 21:56:41 +01:00
Efraim Flashner
691d39a267
gnu: jalv: Build with python-2. 
* gnu/packages/audio.scm (jalv)[arguments]: Build with python-2.
 2018-11-22 22:06:29 +02:00
Pierre Neidhardt
eff8e0b4d9
gnu: ccl: Fix missing command line argument support in wrapper. 
* gnu/packages/lisp.scm (ccl): Fix missing command line argument support in wrapper.
 2018-11-22 19:40:03 +01:00
Arun Isaac
e3a2dd5559
gnu: gajim: Rename wrap-program phases. 
* gnu/packages/messaging.scm (gajim)[arguments]: Rename wrap-program phases to
wrap-gi-typelib-path and wrap-gsettings-schema-dir.
 2018-11-22 22:49:56 +05:30
Marius Bakke
7ff3f3d22c
gnu: python-scikit-learn: Update to 0.20.1. 
* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1.
[source](patches): Remove.
[arguments]: Skip network tests with pytest instead of deleting files.  Make
sure $HOME is writable.
(python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
 2018-11-22 17:02:47 +01:00
Nicolas Goaziou
561e3c1d0d
gnu: supercollider: Update to 3.9.3. 
* gnu/packages/audio.scm (supercollider): Update to 3.9.3.
 2018-11-22 13:00:15 +01:00
Nicolas Goaziou
af90cc45ae
gnu: giac-xcas: Add a "doc" output 
* gnu/packages/algebra.scm (giac-xcas): Add "doc" output.
[arguments]: Add phase to install documentation in the appropriate directory.
 2018-11-22 12:18:52 +01:00
Nicolas Goaziou
90d5ec55ae
gnu: giac-xcas: Update to 1.5.0-19. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.5.0-19.
 2018-11-22 12:18:43 +01:00
Pierre Neidhardt
910ac0effe
gnu: ccl: Properly include x86-headers and remove missing "contrib" folder. 
* gnu/packages/lisp.scm (ccl): Include x86-headers and remove missing "contrib" folder.
[home-page]: Use HTTPS.
 2018-11-22 11:43:17 +01:00
Marius Bakke
ec8130eb23
Merge branch 'master' into core-updates 2018-11-22 00:10:44 +01:00
Marius Bakke
437c78bcfb
gnu: python-tblib: Fix test failure with Python 3.7. 
* gnu/packages/python.scm (python-tblib)[arguments]: Add 'adjust-tests' phase.
 2018-11-22 00:00:44 +01:00
Marius Bakke
148caae049
gnu: python-numpy: Update to 1.15.4. 
* gnu/packages/python.scm (python-numpy): Update to 1.15.4.
 2018-11-21 23:15:21 +01:00
Marius Bakke
d9f8e846b6
gnu: mbedtls-apache: Update to 2.14.0. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.0.
 2018-11-21 23:06:08 +01:00
Marius Bakke
b344a3a937
gnu: termite: Update to 14. 
* gnu/packages/terminals.scm (termite): Update to 14.
 2018-11-21 23:01:38 +01:00
Marius Bakke
b069c30b52
gnu: vte-ng: Update to 0.54.2.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.54.2.a.
 2018-11-21 22:59:27 +01:00
Marius Bakke
6bc00737b0
gnu: vte-ng: Fetch source using git. 
* gnu/packages/gnome.scm (vte-ng)[source]: Rewrite in terms of GIT-FETCH.
 2018-11-21 22:57:48 +01:00
Marius Bakke
afd90f8d62
gnu: vte-ng: Add a home page. 
* gnu/packages/gnome.scm (vte-ng)[home-page]: New field.
 2018-11-21 22:57:14 +01:00
Marius Bakke
b96386501f
gnu: python-numpy: Update to 1.14.6. 
* gnu/packages/python.scm (python-numpy): Update to 1.14.6.
 2018-11-21 22:42:25 +01:00
Marius Bakke
da15325e36
gnu: webkitgtk: Update to 2.22.4. 
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.4.
 2018-11-21 22:24:51 +01:00
Marius Bakke
dca7d8a25c
gnu: git: Update to 2.19.2. 
* gnu/packages/version-control.scm (git): Update to 2.19.2.
 2018-11-21 22:24:35 +01:00
Marius Bakke
aa9eb25983
gnu: feh: Update to 3.1. 
* gnu/packages/image-viewers.scm (feh): Update to 3.1.
 2018-11-21 22:23:47 +01:00
Alex Vong
f9e5caf9ba
gnu: teeworlds: Update to 0.7.0 [fixes CVE-2018-18541]. 
* gnu/packages/games.scm (teeworlds): Update to 0.7.0.
[source]: Switch to git-fetch. Remove all bundled libraries except md5.
[arguments]: Adjust accordingly.
[inputs]: Use sdl2 instead of sdl and python-wrapper instead of python-2.
Add json-parser and pnglite.
* gnu/packages/patches/teeworlds-use-latest-wavpack.patch: Update it.
 2018-11-22 03:21:29 +08:00
Alex Vong
53367e17b6
gnu: bam: Update to 0.5.1. 
* gnu/packages/build-tools.scm (bam): Update to 0.5.1.
[source]: Switch to git-fetch.
[arguments]: Use newly provided Makefile.
[inputs]: Add lua.
 2018-11-22 03:21:05 +08:00
Alex Vong
078e2edf1d
gnu: Add json-parser. 
* gnu/packages/web.scm (json-parser): New variable.
 2018-11-22 03:20:49 +08:00
Alex Vong
6e35bad0a9
gnu: Add pnglite. 
* gnu/packages/image.scm (pnglite): New variable.
 2018-11-22 03:20:11 +08:00
Efraim Flashner
9cf4ff199c
Merge remote-tracking branch 'origin/master' into core-updates 2018-11-21 19:41:43 +02:00
Ludovic Courtès
bf6859e45a
gnu: libbytesize: Make .mo file builds reproducible. 
* gnu/packages/c.scm (libbytesize)[sources](modules, snippet): New
fields.
[arguments]: Add #:configure-flags and #:phases.
 2018-11-21 17:38:00 +01:00
Ludovic Courtès
e555bbfc48
gnu: emacs-pdf-tools: Fix build with recent Poppler. 
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-21 17:38:00 +01:00
Ludovic Courtès
c3d8c6ac7e
gnu: emacs-pdf-tools: Use 'git-fetch'. 
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Switch to
GIT-FETCH.
[arguments]: In 'emacs-patch-variables' phase, make files writable.
 2018-11-21 17:38:00 +01:00
Ludovic Courtès
e1f7912761
gnu: casync: Fix build with glibc 2.28. 
* gnu/packages/patches/casync-renameat2-declaration.patch: New file.
* gnu/packages/sync.scm (casync)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-21 17:38:00 +01:00
Efraim Flashner
4cf879fefb
gnu: ntk: Don't use bundled waf. 
* gnu/packages/fltk.scm (ntk)[inputs]: Add python-waf.
[arguments]: Add custom phase to replace vendored waf.
 2018-11-21 15:43:23 +02:00
Efraim Flashner
24a2e19c43
gnu: python-waf: Use a proper directory structure. 
Fixes <https://bugs.gnu.org/25634>.

* gnu/packages/python.scm (python-waf): Replace custom 'install phase to
install "waf" binary into the bin directory. Remove the 'wrap phase.
* gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase
accordingly.
 2018-11-21 15:43:23 +02:00
Efraim Flashner
a2aa746cfe
gnu: python-waf: Use a proper directory structure. 
Fixes <https://bugs.gnu.org/25634>.

* gnu/packages/python.scm (python-waf): Replace custom 'install phase to
install "waf" binary into the bin directory. Remove the 'wrap phase.
* gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase
accordingly.
 2018-11-21 15:20:20 +02:00
Jan Nieuwenhuizen
96cae1b48c
gnu: font-ubuntu: Update url. 
* gnu/packages/fonts.scm (font-ubuntu): Use new url, update hash.
 2018-11-21 14:06:07 +01:00
swedebugia
ab5d91dd50
gnu: Add python-wikidata. 
* gnu/packages/python.scm (python-wikidata): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-21 11:55:57 +01:00
Efraim Flashner
4e94cdb652
gnu: python-astroid: Update to 2.0.4. 
* gnu/packages/python.scm (python-astroid): Update to 2.0.4.
[source]: Switch to pypi source.
[native-inputs]: Add python-dateutil, python-nose, python-pytest,
python-pytest-runner.
[arguments]: Add phase to remove spurious test failure. Update custom
'check phase.
(python2-astroid): Update to 1.6.5.
[source]: Use pypi source.
[arguments]: Add phase to remove spurious test failure.
 2018-11-21 12:00:01 +02:00
Efraim Flashner
1200783972
gnu: thermald: Clean up package definition. 
* gnu/packages/admin.scm (thermald)[arguments]: Remove redundant
'bootstrap phase. Remove unnecessary udev configure flag.
 2018-11-21 10:13:07 +02:00
Efraim Flashner
d09e84c271
gnu: thermald: Don't use unstable tarball. 
* gnu/packages/admin.scm (thermald)[source]: Download source using
git-fetch.
 2018-11-21 10:13:06 +02:00
Maxim Cournoyer
56ddcf0414
gnu: emacs-elpy: Update to 1.26.0. 
* gnu/packages/emacs.scm (emacs-elpy): Update to 1.26.0.
 2018-11-20 23:57:58 -05:00
Vagrant Cascadian
0da3526d58
gnu: u-boot-pine64-plus: Refactor package definition. 
* gnu/packages/bootloaders.scm (make-u-boot-sunxi64-package): New procedure.
(u-boot-pine64-plus): Use it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-11-20 23:39:41 +01:00
Vagrant Cascadian
95d9198606
gnu: arm-trusted-firmware-pine64-plus: Rename variable to arm-trusted-firmware-sun50i-a64. 
* gnu/packages/firmware (arm-trusted-firmware-pine64-plus): Rename to...
(arm-trusted-firmware-sun50i-a64): ...this.
* gnu/packages/bootloaders (u-boot-pine64-plus)[native-inputs]: Use it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-11-20 23:34:31 +01:00
Vagrant Cascadian
725b077e40
gnu: arm-trusted-firmware-pine64-plus: Update to 2.0-1.cabe0a3. 
* gnu/packages/firmware.scm (arm-trusted-firmware-pine64-plus):
Use platform name from upstream ("sun50i_a64").
[version]: Update to 2.0-1.cabe0a3,
[source](uri): Use upstream git repository.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-11-20 23:32:55 +01:00
Christopher Baines
be02d4df84
gnu: Add python-django-debug-toolbar. 
* gnu/packages/django.scm (python-django-debug-toolbar,
python2-django-debug-toolbar): New variables.
 2018-11-20 19:48:03 +00:00
Christopher Baines
a2e9259697
gnu: Add python-django-jinja. 
* gnu/packages/django.scm (python-django-jinja, python2-django-jinja): New
variables.
 2018-11-20 19:48:02 +00:00
Christopher Baines
6cd1bbd0b1
gnu: Add python-django-pipeline. 
* gnu/packages/django.scm (python-django-pipeline, python2-django-pipeline):
New variables.
 2018-11-20 19:48:02 +00:00
Christopher Baines
9c98d588c2
gnu: Add python-slimit. 
* gnu/packages/python-web.scm (python-slimit, python2-slimit): New variables.
 2018-11-20 19:48:02 +00:00
Christopher Baines
90b9c5adea
gnu: Add python-jsmin. 
* gnu/packages/python-web.scm (python-jsmin, python2-jsmin): New variables.
 2018-11-20 19:48:00 +00:00
Kei Kebreau
b3175c709d
gnu: cabextract: Update to 1.9. 
* gnu/packages/compression.scm (cabextract): Update to 1.9.
[arguments]: Add phase "unpack-libmspack".
[inputs]: Add libmspack-source.
 2018-11-20 13:55:10 -05:00
Kei Kebreau
ea80fd1ff5
gnu: libmspack: Update to 0.9.1. 
* gnu/packages/compression.scm (libmspack): Update to 0.9.1.
 2018-11-20 13:53:06 -05:00
Ludovic Courtès
3c4103c84f
gnu: java-jansi-native: Add "mips64el-linux" case. 
* gnu/packages/java.scm (java-jansi-native)[arguments]: Add
"mips64el-linux" in 'match' clause.
 2018-11-20 18:39:22 +01:00
Ludovic Courtès
e11462c2e4
Revert "gnu: ccl: Include x86-headers and remove missing "contrib" folder." 
This reverts commit d22ba64276, which
broke evaluations for armhf-linux.
 2018-11-20 18:36:05 +01:00
Ludovic Courtès
242b29baa1
gnu: autotalent: Simplify 'license'. 
* gnu/packages/audio.scm (autotalent)[license]: Remove unnecessary 'list'.
 2018-11-20 18:36:05 +01:00
Efraim Flashner
5e369f8ab9
gnu: Add pinentry-efl. 
* gnu/packages/gnupg.scm (pinentry-efl): New variable.
* gnu/packages/patches/pinentry-efl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-11-20 12:38:57 +02:00
Marius Bakke
4f70db97a0
Merge branch 'master' into core-updates 2018-11-20 01:14:12 +01:00
Marius Bakke
30f0feff19
gnu: libwebp: Update to 1.0.1. 
* gnu/packages/image.scm (libwebp): Update to 1.0.1.
 2018-11-20 00:57:49 +01:00
Marius Bakke
7882cc55bc
gnu: fluidsynth: Update to 2.0.2. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.2.
 2018-11-20 00:57:49 +01:00
Marius Bakke
352401efb8
gnu: python-joblib: Update home page. 
* gnu/packages/python.scm (python-joblib)[home-page]: Update to current.
 2018-11-20 00:57:49 +01:00
Marius Bakke
ff43d95807
gnu: python-joblib: Update to 0.13.0. 
* gnu/packages/python.scm (python-joblib): Update to 0.13.0.
[source](snippet): Remove.
[arguments]: Remove 'disable-failing-tests' phase.  Add custom check phase.
[native-inputs]: Remove PYTHON-NOSE, PYTHON-SPHINX, PYTHON-DOCUTILS and
PYTHON-NUMPYDOC.  Add PYTHON-PYTEST.
 2018-11-20 00:57:49 +01:00
Marius Bakke
89d88b8530
gnu: python-natsort: Update to 5.4.1. 
* gnu/packages/python.scm (python-natsort): Update to 5.4.1.
[arguments]: Add #:modules.  Replace 'check' phase with custom pytest
invokation.
[native-inputs]: Remove PYTHON-PYTEST-CACHE, PYTHON-PYTEST-FLAKES and
PYTHON-PYTEST-PEP8.  Add PYTHON-PYTEST and PYTHON-PYTEST-MOCK.
(python2-natsort)[native-inputs]: Remove PYTHON2-ENUM34 and PYTHON2-MOCK.
 2018-11-20 00:57:48 +01:00
Marius Bakke
4a4f3e771b
gnu: z3: Update to 4.8.1. 
* gnu/packages/maths.scm (z3): Update to 4.8.1.
 2018-11-20 00:57:48 +01:00
Marius Bakke
fb525bfd83
gnu: z3: Fetch source using git. 
* gnu/packages/maths.scm (z3)[source]: Change to GIT-FETCH.
 2018-11-20 00:57:48 +01:00
Pkill -9
cc661cb348
gnu: xonotic: Symlink to xonotic data instead of copying into xonotic. 
* gnu/packages/games.scm (xonotic)[arguments]: Modify the phase
'install-data so it creates a symlink to xonotic's data instead of
copying it into the xonotic package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-19 23:11:38 +01:00
Thorsten Wilms
c3276dbecb
gnu: Add autotalent. 
* gnu/packages/audio.scm (autotalent): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-19 23:11:38 +01:00
Ludovic Courtès
887437ee0e
gnu: git-when-merged: Fix license. 
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/version-control.scm (git-when-merged)[license]: Change to
GPL2+.
 2018-11-19 23:11:38 +01:00
Roel Janssen
4db71841ee
gnu: r-shinyfiles: Update to 0.7.2. 
* gnu/packages/web.scm (r-shinyfiles): Update to 0.7.2.
 2018-11-19 17:20:05 +01:00
Roel Janssen
0adf04a2d3
gnu: r-mclust: Update to 5.4.2. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.2.
 2018-11-19 17:19:44 +01:00
Roel Janssen
185663e568
gnu: r-openssl: Update to 1.1. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.1.
 2018-11-19 17:19:15 +01:00
Roel Janssen
749872a5ed
gnu: r-biocmanager: Update to 1.30.4. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.4.
 2018-11-19 17:18:41 +01:00
Roel Janssen
278e0f6506
gnu: r-ggeffects: Update to 0.7.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.7.0.
 2018-11-19 17:18:19 +01:00
Roel Janssen
fba7dbe76c
gnu: r-sjstats: Update to 0.17.2. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.2.
 2018-11-19 17:17:54 +01:00
Roel Janssen
1659c5dd27
gnu: r-ggpubr: Update to 0.2. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.
 2018-11-19 17:17:25 +01:00
Roel Janssen
e396b37822
gnu: r-recipes: Update to 0.1.4. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.4.
 2018-11-19 17:17:03 +01:00
Roel Janssen
e21659c70b
gnu: r-dimred: Update to 0.2.2. 
* gnu/packages/cran.scm (r-dimred): Update to 0.2.2.
 2018-11-19 17:16:35 +01:00
Roel Janssen
c2e26dc156
gnu: r-ensembldb: Update to 2.6.2. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.2.
 2018-11-19 16:46:32 +01:00
Roel Janssen
e038819138
gnu: r-msnbase: Update to 2.8.1. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.1.
 2018-11-19 16:46:00 +01:00
Roel Janssen
4535a7b0f5
gnu: r-genomeinfodb: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.1.
 2018-11-19 16:33:35 +01:00
Alex Vong
5497214d80
gnu: Add clojure-algo-monads. 
* gnu/packages/lisp.scm (clojure-algo-monads): New public variable.
 2018-11-19 12:10:06 +01:00
Alex Vong
2cab1d4a7d
gnu: Add clojure-tools-macro. 
* gnu/packages/lisp.scm (clojure-tools-macro): New public variable.
 2018-11-19 12:09:53 +01:00
Alex Vong
eea5530c9f
gnu: Add clojure-algo-generic. 
* gnu/packages/lisp.scm (clojure-algo-generic): New public variable.
 2018-11-19 12:09:39 +01:00
Alex Vong
c784ffa0c4
gnu: Add clojure-core-match. 
* gnu/packages/lisp.scm (clojure-core-match): New public variable.
 2018-11-19 12:09:15 +01:00
Alex Vong
d2a659e5bf
gnu: Add clojure-instaparse. 
* gnu/packages/lisp.scm (clojure-instaparse): New public variable.
 2018-11-19 12:08:26 +01:00
Alex Vong
53f316ab90
guix: Add clojure-utils. 
* guix/build/clojure-utils.scm: New file.
* gnu/packages/lisp.scm (clojure)[arguments]: Use it.
* Makefile.am (MODULES): Add it.
 2018-11-19 12:05:19 +01:00
Alex Vong
d0ad97115a
gnu: clojure: Use (guix build java-utils) to simplify build phases. 
* gnu/packages/lisp.scm (clojure)[arguments]: Use 'ant-build-javadoc',
'install-jars' and 'install-javadoc' in build phases.
 2018-11-19 12:02:26 +01:00
Alex Vong
8da9187a5a
gnu: clojure: Refactor to ensure there's a single list of libraries. 
This avoids having to update multiple lists.

* gnu/packages/lisp.scm (clojure)[native-inputs]: Use new local variable.
[arguments]: Adjust build phases accordingly.
 2018-11-19 12:02:09 +01:00
Alex Vong
df0a180421
gnu: clojure: Remove 'remove-archives' snippet. 
This is no longer needed since clojure now makes official source releases
in github.

* gnu/packages/lisp.scm (clojure)[source]: Remove it.
[native-inputs]: Remove it in 'submodule'.
[arguments]: Adjust 'unpack-submodule-sources' phase accordingly.
 2018-11-19 12:01:48 +01:00
Alex Vong
28e32b14e4
gnu: clojure: Move from java to lisp. 
* gnu/packages/java.scm (clojure): Move from here...
* gnu/packages/lisp.scm (clojure): ...to here.
 2018-11-19 12:01:25 +01:00