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295 Commits

Author SHA1 Message Date
Vinicius Monego
2522ea38a3
gnu: python-opentsne: Update to 0.6.1. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.6.1.
[source]<file-name>: Use git-file-name.
[arguments]<#:phases>: Don't return #t. Add 'skip-test phase after 'unpack to
skip a failing test.
 2022-01-14 21:29:59 +01:00
Vinicius Monego
0848b5595c
gnu: python-pynndescent: Update to 0.5.5. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.5.
[arguments]<#:phases>: Override 'check phase.
[native-inputs]: Remove python-nose. Add python-pytest.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-14 21:29:58 +01:00
Marius Bakke
c7ef428a18
gnu: python-scikit-rebate: Update to 0.62. 
* gnu/packages/machine-learning.scm (python-scikit-rebate): Update to 0.62.
[arguments]: Disable tests.
[native-inputs]: Remove.
 2022-01-11 18:36:39 +01:00
Ricardo Wurmus
06b51c68de
gnu: Add guile-aiscm-next. 
* gnu/packages/machine-learning.scm (guile-aiscm-next): New variable.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
f44305bc13
gnu: guile-aiscm: Remove opencv and tensorflow. 
* gnu/packages/machine-learning.scm (guile-aiscm)[inputs]: Remove opencv and
tensorflow.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
50bd2b331c
gnu: guile-aiscm: Remove timestamp from documentation. 
* gnu/packages/machine-learning.scm (guile-aiscm)[arguments]: Add phase
'build-reproducibly.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
9e644d979d
gnu: tensorflow: Install C headers. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Add build phase
'patch-cmake-file-to-install-c-headers; move setting of LDFLAGS from
'build-pip-package to 'unpack-third-party-sources; move 'build-pip-package
after 'install phase.
[source]: Add patch.
* gnu/packages/patches/tensorflow-c-api-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
f9d3f74ad2
gnu: Add guile-aiscm. 
* gnu/packages/machine-learning.scm (guile-aiscm): New variable.
 2021-12-27 13:21:05 +01:00
Ricardo Wurmus
e1c91aae23
gnu: tensorflow: Fix build with newer numpy. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Rename
'python3.7-compatibility to 'python3.9-compatibility and patch file to allow
building with newer numpy.
 2021-12-15 08:31:50 +01:00
Ricardo Wurmus
76ab15a7c9
gnu: tensorflow: Do not unpack directory. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Copy Eigen source
code instead of trying to unpack it.
 2021-12-14 15:34:44 +01:00
Ludovic Courtès
e3196755e6
gnu: Further simplify package inputs. 
This is the result of running:

  ./pre-inst-env guix style --input-simplification=safe

and manually undoing changes on a dozen of packages to reduce
rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
 2021-12-13 22:15:07 +01:00
Ludovic Courtès
8394619bac
gnu: Simplify package inputs. 
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
 2021-12-13 17:48:25 +01:00
Ricardo Wurmus
ab445eb4b7
gnu: python2-scikit-learn: Disable one more test. 
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Do not
inherit; remove obsolete 'make-files-writable phase; disable one more failing
test in 'check phase.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
4fb363c906
gnu: libsvm: Install header and library. 
* gnu/packages/machine-learning.scm (libsvm)[arguments]: Add build phase
'build-lib; also install header file and shared library in the 'install phase.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
c8060055de
gnu: ocaml-mcl: Add -fcommon to compiler flags. 
* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
c25a6d39f3
gnu: mcl: Add -fcommon to compiler flags. 
* gnu/packages/machine-learning.scm (mcl)[arguments]: Set CFLAGS.
 2021-12-07 12:34:34 +01:00
Ricardo Wurmus
9bc0f45df5
Merge remote-tracking branch 'origin/master' into core-updates-frozen 2021-12-05 19:17:41 +01:00
Ricardo Wurmus
cd40978a4b
gnu: randomjungle: Fix compatibility errors. 
* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase
'fix-compatibility-errors to patch type errors.
 2021-12-02 00:32:12 +01:00
Ricardo Wurmus
b182e13638
gnu: python-scikit-learn: Update to 1.0.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.1.
[arguments]: Disable one failing network test.
 2021-11-20 16:22:53 +01:00
Ricardo Wurmus
3d56b8af90
gnu: python-scikit-learn: Run tests conditionally. 
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Respect
TESTS? in 'check phase.
 2021-11-20 16:22:53 +01:00
Ricardo Wurmus
443f3e170a
gnu: python-pytorch: Warn of missing test inputs. 
* gnu/packages/machine-learning.scm (python-pytorch): Add comment.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
9a3dffc851
gnu: python-pytorch: Add missing input. 
* gnu/packages/machine-learning.scm (python-pytorch)[propagated-inputs]: Add
python-click.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
1e13f73605
gnu: python-pytorch: Use ADD-INSTALLED-PYTHONPATH. 
* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Do not set
PYTHONPATH; use add-installed-pythonpath instead.
 2021-11-20 12:02:19 +01:00
Ludovic Courtès
3a317f7476
Merge branch 'master' into core-updates-frozen 2021-11-17 23:43:14 +01:00
Ludovic Courtès
782e9975dc
gnu: python-pytorch: Update to 1.10.0. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.0.
* gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust.
 2021-11-15 17:55:50 +01:00
Maxim Cournoyer
8b11b4a829
gnu: python-keras: Skip a flaky test. 
* gnu/packages/machine-learning.scm (python-keras)
[phases]{check}: Also skip the test_stateful_metrics test.
 2021-11-11 10:31:29 -05:00
Maxim Cournoyer
11e7a534f7
gnu: python-keras: Enable parallel tests. 
* (python-keras)[phases]: Delete trailing #t.
{check}: Honor TESTS?.  Run the tests in parallel.  Disable PEP8 lint.
 2021-11-11 10:31:28 -05:00
Maxim Cournoyer
92c3d1c3d0
gnu: tensorflow: Enable parallel build (at least partially). 
There are still many parts of the build that happen sequentially, but at least
this hastens the long build somewhat.

* gnu/packages/machine-learning.scm (tensorflow)[phases]: Remove trailing #t.
{build-pip-package}: Honor the PARALLEL-BUILD? argument.
 2021-11-11 10:31:28 -05:00
Maxim Cournoyer
f0ce5a6051
gnu: abseil-cpp: Update to 20210324.2. 
But keep the older variant for Tensorflow.

* gnu/packages/cpp.scm (abseil-cpp-20200923.3): Renamed older variant.
(abseil-cpp): New variable.
* gnu/packages/machine-learning.scm (tensorflow-lite)
[inputs]: Adjust to use the older abseil-cpp-20200923.3.
* gnu/packages/rpc.scm (grpc-1.16.1)[native-inputs]: Likewise.

Co-authored-by: Greg Hogan <code@greghogan.com>
 2021-11-11 10:31:25 -05:00
Mathieu Othacehe
a1eca979fb
Merge remote-tracking branch 'origin/master' into core-updates-frozen. 2021-10-12 17:46:23 +00:00
Vinicius Monego
40a6d8eb7d
gnu: Add python-xgboost. 
* gnu/packages/machine-learning.scm (python-xgboost): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:28 -04:00
Vinicius Monego
6e5e60a20c
gnu: Add xgboost. 
* gnu/packages/machine-learning.scm (xgboost): New variable.
* gnu/packages/patches/xgboost-use-system-dmlc-core.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:28 -04:00
Vinicius Monego
7e73fc3bb9
gnu: Add dmlc-core. 
* gnu/packages/machine-learning.scm (dmlc-core): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:23 -04:00
Ludovic Courtès
d326dec811
gnu: python-pytorch: Unbundle NNPACK. 
* gnu/packages/machine-learning.scm (python-pytorch)[source]: Delete
"third_party/NNPACK".
[inputs]: Add NNPACK.
[propagated-inputs]: Remove PYTHON-PEACHPY.
* gnu/packages/patches/python-pytorch-system-libraries.patch: Remove
hunk modifying NNPACK; add hunk to allow the use of our own NNPACK.
 2021-09-24 13:48:50 +02:00
Ludovic Courtès
8df301d467
gnu: Add NNPACK. 
* gnu/packages/machine-learning.scm (nnpack): New variable.
* gnu/packages/patches/nnpack-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-09-24 13:48:49 +02:00
Ludovic Courtès
d9dfbf886d
Merge branch 'master' into core-updates-frozen 2021-09-07 14:19:08 +02:00
Marius Bakke
c4133c43c7
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/algebra.scm
	gnu/packages/games.scm
	gnu/packages/golang.scm
	gnu/packages/kerberos.scm
	gnu/packages/mail.scm
	gnu/packages/python.scm
	gnu/packages/ruby.scm
	gnu/packages/scheme.scm
	gnu/packages/tex.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
 2021-08-12 00:30:27 +02:00
Marius Bakke
d2e102d4e4
Merge branch 'master' into core-updates-frozen 2021-08-01 23:23:32 +02:00
Marius Bakke
b029be2ee0
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
 2021-07-29 22:34:57 +02:00
Ludovic Courtès
630c39d8df
gnu: onnx: Change source to 'git-fetch'. 
* gnu/packages/machine-learning.scm (onnx)[source]: Change to
'git-fetch'.  Add "onnx-skip-model-downloads.patch".
[arguments]: Add 'make-test-directory-writable' phase.
* gnu/packages/patches/onnx-skip-model-downloads.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-31 01:03:24 +02:00
Ludovic Courtès
fa2d94b5e3
gnu: python-onnx: Rename to "onnx". 
* gnu/packages/machine-learning.scm (python-onnx): Rename to...
(onnx): ... this, and change 'name' field accordingly.
(python-onnx): New variable.
* gnu/packages/patches/python-onnx-shared-libraries.patch: Rename to...
* gnu/packages/patches/onnx-shared-libraries.patch: ... this.
* gnu/packages/patches/python-onnx-use-system-googletest.patch: Rename
to...
* gnu/packages/patches/onnx-use-system-googletest.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2021-07-31 01:03:24 +02:00
Ludovic Courtès
2b55f914c3
gnu: python-onnx: Install libonnx.so and libonnx_proto.so. 
* gnu/packages/patches/python-onnx-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (python-onnx)[source]: Use it.
[arguments]: New field.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
bb5b6b09dc
gnu: python-onnx: Delete bundled software. 
* gnu/packages/machine-learning.scm (python-onnx)[source]: Delete
the 'third_party' directory.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
3ac3ca367a
gnu: python-onnx: Move comment to the patch header. 
* gnu/packages/machine-learning.scm (python-onnx): Move patch comment to...
* gnu/packages/patches/python-onnx-use-system-googletest.patch: ... here.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
5f9dc326d9
gnu: python-onnx: Update to 1.9.0. 
* gnu/packages/machine-learning.scm (python-onnx): Update to 1.9.0.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
b402a3ec86
gnu: Add XNNPACK. 
* gnu/packages/machine-learning.scm (xnnpack): New variable.
* gnu/packages/patches/xnnpack-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:55 +02:00
Ricardo Wurmus
c9aee89abf
gnu: python-scikit-learn: Update to 0.24.2. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.2.
[arguments]: Remove trailing #t.
 2021-08-30 18:29:57 +02:00
Ricardo Wurmus
5795fbbd0f
gnu: Add python-hmmlearn. 
* gnu/packages/machine-learning.scm (python-hmmlearn): New variable.
 2021-08-27 13:37:30 +02:00
Ludovic Courtès
a537ef5e0c
gnu: python-pytorch: Remove leftover comment. 
* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Remove
leftover comment.
 2021-08-04 18:03:28 +02:00
Ludovic Courtès
dd55ad7ff8
gnu: Add python-pytorch. 
* gnu/packages/machine-learning.scm (python-pytorch): New variable.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2021-08-04 17:22:19 +02:00
Ludovic Courtès
38d319d38a
gnu: gemmlowp: Add "generic" variant. 
* gnu/packages/machine-learning.scm (gemmlowp): New variable, based on
'gemmlowp-for-tensorflow'.
(gemmlowp-for-tensorflow): Rewrite to inherit from GEMMLOWP.
[properties]: New field.
 2021-08-04 17:22:19 +02:00
Ludovic Courtès
c83d7d68f3
gnu: gloo: Honor #:tests? in 'check' phase. 
* gnu/packages/machine-learning.scm (gloo)[arguments]: In 'check' phase,
honor #:tests?.
 2021-08-04 17:22:19 +02:00
Ludovic Courtès
36f7e1d783
gnu: gloo: Update to c22a5cf. 
* gnu/packages/machine-learning.scm (gloo): Update to c22a5cf.
[inputs]: New field.
 2021-08-04 17:22:19 +02:00
Ricardo Wurmus
c1e4110971
gnu: Add tensorflow-lite. 
* gnu/packages/machine-learning.scm (tensorflow-lite): New variable.
 2021-08-04 11:09:05 +02:00
Ludovic Courtès
6da2b35b60
gnu: Add onnx-optimizer. 
* gnu/packages/machine-learning.scm (onnx-optimizer): New variable.
* gnu/packages/patches/onnx-optimizer-system-library.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-08-02 18:11:33 +02:00
Vinicius Monego
8854acd434
gnu: Add python-hyperopt. 
* gnu/packages/machine-learning.scm (python-hyperopt): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 17:56:58 +02:00
Ludovic Courtès
377e9453ca
gnu: Use 'search-input-file' when looking for *.so and *.a. 
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-file' when looking for *.a and *.so.
* gnu/packages/emulators.scm (dolphin-emu): Likewise.
* gnu/packages/engineering.scm (lepton-eda): Likewise.
(pcb): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
(go-1.14): Likewise.
* gnu/packages/haskell.scm (ghc-7): Likewise.
* gnu/packages/irods.scm (irods): Likewise.
* gnu/packages/language.scm (python2-tegaki-pygtk): Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-lzlib): Likewise.
(sbcl-cl-gobject-introspection): Likewise.
(sbcl-cl-ana): Likewise.
(sbcl-cl-libuv): Likewise.
(sbcl-cl-async): Likewise.
(sbcl-mcclim): Likewise.
(sbcl-zstd): Likewise.
(sbcl-cl-opengl): Likewise.
(sbcl-lev): Likewise.
(sbcl-cl-glfw3): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
* gnu/packages/messaging.scm (utox): Likewise.
* gnu/packages/mpi.scm (java-openmpi): Likewise.
* gnu/packages/music.scm (jack-select): Likewise.
* gnu/packages/pascal.scm (fpc): Likewise.
* gnu/packages/python-crypto.scm (python-libnacl): Likewise.
* gnu/packages/python-xyz.scm (python-cairocffi): Likewise.
(python-pyev): Likewise.
(python-pytidylib): Likewise.
* gnu/packages/radio.scm (unixcw): Likewise.
* gnu/packages/rust.scm (rust-1.32): Likewise.
* gnu/packages/security-token.scm (opensc): Likewise.
(python-pyscard): Likewise.
* gnu/packages/selinux.scm (python-setools): Likewise.
* gnu/packages/spice.scm (libcacard): Likewise.
* gnu/packages/telephony.scm (libtgvoip): Likewise.
 2021-07-24 16:23:23 +02:00
Ludovic Courtès
1ec13efbd2
gnu: Use 'search-input-directory' for the Eigen header directory. 
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-directory' when searching for Eigen headers.
* gnu/packages/bioinformatics.scm (nanopolish): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
 2021-07-24 16:23:22 +02:00
Ludovic Courtès
0e47fcced4
Merge branch 'master' into core-updates 2021-07-18 19:50:01 +02:00
Vinicius Monego
57a747e15a
gnu: Add python-cmaes. 
* gnu/packages/machine-learning.scm (python-cmaes): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 16:49:06 +02:00
Marius Bakke
f034264204
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/bioinformatics.scm
	gnu/packages/django.scm
	gnu/packages/gtk.scm
	gnu/packages/llvm.scm
	gnu/packages/python-web.scm
	gnu/packages/python.scm
	gnu/packages/tex.scm
	guix/build-system/asdf.scm
	guix/build/emacs-build-system.scm
	guix/profiles.scm
 2021-05-09 21:29:46 +02:00
Vinicius Monego
9605f23ff4
gnu: python-opentsne: Update to 0.5.2. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.5.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00
Vinicius Monego
34c09669c9
gnu: python-pynndescent: Update to 0.5.2. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00
Christopher Baines
a8448da0f4
Merge branch 'master' into core-updates 2021-03-06 00:18:30 +00:00
Vinicius Monego
df76cadf57
gnu: python-onnx: Update to 1.8.1. 
* gnu/packages/machine-learning.scm (python-onnx): Update to 1.8.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-02-21 01:26:20 +01:00
Ricardo Wurmus
96193caaa1
gnu: python-scikit-learn: Update to 0.24.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.1.
[propagated-inputs]: Add python-threadpoolctl.
(python2-scikit-learn)[inputs,native-inputs,propagated-inputs]: Do not
inherit these fields.
 2021-02-19 23:24:05 +01:00
Christopher Baines
e740cc6140
Merge branch 'master' into core-updates 2021-02-03 09:57:35 +00:00
Maxim Cournoyer
ef302ba9c3
gnu: kaldi-gstreamer-server: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server):
[phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH.
 2021-02-01 11:54:04 -05:00
Maxim Cournoyer
d42245d401
gnu: Adjust package collection to Wrap using GUIX_PYTHONPATH. 
This change was automated using:

$ git ls-files | grep .scm | \
  xargs sed 's/(getenv "PYTHONPATH")/(getenv "GUIX_PYTHONPATH")/' -i

$ git ls-files | grep .scm | \
  xargs sed 's/`("PYTHONPATH"/`("GUIX_PYTHONPATH"/' -i

* gnu/packages/admin.scm (nmap):
(dstat): Wrap using GUIX_PYTHONPATH.
* gnu/packages/audio.scm (jack-2):
(carla): Likewise.
* gnu/packages/benchmark.scm (fio): Likewise.
* gnu/packages/bioinformatics.scm (couger): Likewise.
(gess, find-circ, filtlong, nanopolish): Likewise.
* gnu/packages/cdrom.scm (cdemu-client): Likewise.
* gnu/packages/chemistry.scm (avogadro): Likewise.
* gnu/packages/connman.scm (econnman): Likewise.
* gnu/packages/cups.scm (hplip): Likewise.
* gnu/packages/debug.scm (scanmem): Likewise.
* gnu/packages/display-managers.scm (lightdm): Likewise.
* gnu/packages/ebook.scm (cozy): Likewise.
* gnu/packages/education.scm (anki): Likewise.
* gnu/packages/engineering.scm (kicad, volk, freecad): Likewise.
* gnu/packages/game-development.scm (renpy): Likewise.
* gnu/packages/games.scm (roguebox-adventures)
(seahorse-adventures, kajongg): Likewise.
* gnu/packages/gimp.scm (gimp, glimpse): Likewise.
* gnu/packages/glib.scm (itstool): Likewise.
* gnu/packages/gnome.scm (gnome-music, gtg, rhythmbox): Likewise.
(eolie, d-feet, gedit, caribou, gnome-shell, authenticator)
(gnome-todo, orca, passwordsafe, terminator, setzer)
(libratbag, komikku): Likewise.
* gnu/packages/gps.scm (gpsd): Likewise.
* gnu/packages/gtk.scm (gtk-doc): Likewise.
* gnu/packages/ibus.scm (ibus, ibus-libpinyin, ibus-anthy)
(ibus-libhangul): Likewise.
* gnu/packages/inkscape.scm (inkscape-1.0): Likewise.
* gnu/packages/linux.scm (bcc): Likewise.
* gnu/packages/mail.scm (notifymuch): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/music.scm (solfege): Likewise.
* gnu/packages/networking.scm (blueman): Likewise.
* gnu/packages/patchutils.scm (patchwork): Likewise.
* gnu/packages/photo.scm (rapid-photo-downloader, entangle): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/presentation.scm (presentty): Likewise.
* gnu/packages/screen.scm (byobu): Likewise.
* gnu/packages/storage.scm (ceph): Likewise.
* gnu/packages/syndication.scm (liferea): Likewise.
* gnu/packages/task-management.scm (blanket): Likewise.
* gnu/packages/text-editors.scm (manuskript): Likewise.
* gnu/packages/version-control.scm (gitless, cgit, git-when-merged)
(git-imerge): Likewise.
* gnu/packages/video.scm (pitivi): Likewise.
* gnu/packages/virtualization.scm (criu): Likewise.
* gnu/packages/xfce.scm (catfish): Likewise.
 2021-02-01 11:54:01 -05:00
Maxim Cournoyer
e3bc7881f2
gnu: ghmm: Do not set PYTHONPATH. 
* gnu/packages/machine-learning.scm (ghmm): Remove trailing #t.
[phases]: Do not reorder the check phase after the install phase.
{fix-PYTHONPATH}: Remove phase.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
4327f06ed5
gnu: tensorflow: Do not alter PYTHONPATH. 
* gnu/packages/machine-learning.scm (tensorflow)[phases]: Delete trailing #t.
{fix-python-build}: Do not alter PYTHONPATH.
 2021-02-01 11:53:48 -05:00
Efraim Flashner
3d72867e10
gnu: Add python-threadpoolctl. 
* gnu/packages/machine-learning.scm (python-threadpoolctl): New variable.
 2021-01-31 16:31:32 +02:00
Maxim Cournoyer
dbcd205050
gnu: python-xyz: Move a few modules to (gnu packages python-build). 
* gnu/packages/python-xyz.scm (python-pep517): Inherit from
python-pep517-bootstrap.  Remove the inherited common fields.
(python-poetry-core, python-wheel)
(python-toml): Move to ...
* gnu/packages/python-build.scm: ... here, a new module.
(python-pep517-bootstrap): New package.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the new module.
 2021-01-27 08:05:42 -05:00
Maxim Cournoyer
13bb41f814
gnu: python-xyz: Move a few modules to (gnu packages python-build). 
* gnu/packages/python-xyz.scm (python-pep517): Inherit from
python-pep517-bootstrap.  Remove the inherited common fields.
(python-poetry-core, python-wheel)
(python-toml): Move to ...
* gnu/packages/python-build.scm: ... here, a new module.
(python-pep517-bootstrap): New package.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the new module.
 2021-01-15 16:33:07 -05:00
Vinicius Monego
7ae66d9c12
gnu: python-onnx: Update to 1.8.0. 
* gnu/packages/machine-learning.scm (python-onnx): Update to 1.8.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-12-12 21:38:48 +01:00
Vinicius Monego
6a5da0d034
gnu: Add python-opentsne. 
* gnu/packages/machine-learning.scm (python-opentsne): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-11-25 18:38:00 -05:00
Vinicius Monego
8cd10a76b8
gnu: Add python-pynndescent. 
* gnu/packages/machine-learning.scm (python-pynndescent): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-11-25 18:38:00 -05:00
Maxim Cournoyer
5f37d7e38e
gnu: python-keras: Fix build. 
Fixes <https://issues.guix.gnu.org/39562>.

* gnu/packages/machine-learning.scm (python-keras)[phases]{check}: Apply
upstream fix to test_topology.py.  Skip the failing test_selu test.

Reported-by: Pierre Neidhardt <mail@ambrevar.xyz>
 2020-10-05 01:49:45 -04:00
Maxim Cournoyer
01f3f0e928
gnu: ocaml-mcl: Fix build. 
It was failing on a /bin/sh occurrence patched twice in the configure script:

sh: ./configure:/gnu/store/...-bash-minimal-5.0.16/gnu/store/...-bash-minimal-5.0.1:bad
interpreter: No such file or directory

* gnu/packages/machine-learning.scm (ocaml-mcl)[phases]{patch-paths}: Do not
patch the configure script.
 2020-10-02 21:47:28 -04:00
zimoun
d3d38bd8f1
gnu: r-adaptivesparsity: Move to (gnu packages cran). 
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here...
* gnu/packages/cran.scm (r-adaptivesparsity): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:48:38 +02:00
Efraim Flashner
d9bba529fc
gnu: vowpal-wabbit: Install more headers. 
* gnu/packages/machine-learning.scm (vowpal-wabbit)[arguments]: Add
'install-more-headers phase to install more headers.
 2020-08-30 14:13:32 +03:00
Efraim Flashner
f90b26917a
gnu: dlib: Install shared library. 
Reported by Hamzeh Nasajpour <h.nasajpour@pantherx.org>.

* gnu/packages/machine-learning.scm (dlib)[arguments]: Add
configure-flag to build shared library. Remove custom
'delete-static-library phase.
 2020-08-13 11:29:36 +03:00
Tobias Geerinckx-Rice
e4d51494e8
gnu: openfst: Update to 1.7.9. 
* gnu/packages/machine-learning.scm (openfst): Update to 1.7.9.
 2020-08-11 03:15:35 +02:00
Vinicius Monego
b654037403
gnu: Add python-onnx. 
* gnu/packages/machine-learning.scm (python-onnx): New variable.
* gnu/packages/patches/python-onnx-use-system-googletest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-03 08:59:52 +02:00
Ludovic Courtès
b0e7b6992f
gnu: Remove ".git" from "https://github/…/….git". 
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs.  Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.

* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
 2020-07-12 23:08:15 +02:00
Guillaume Le Vaillant
8f1ab4fb41
gnu: Move some lisp libraries. 
Move the 3 lisp libraries that are not in lisp-xyz.scm with the others.

* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format,
  ecl-cl-libsvm-format, sbcl-cl-online-learning, cl-online-learning,
  ecl-cl-online-learning, sbcl-cl-random-forest, cl-random-forest,
  ecl-cl-random-forest): Move to ...
* gnu/packages/lisp-xyz.scm (sbcl-cl-libsvm-format, cl-libsvm-format,
  ecl-cl-libsvm-format, sbcl-cl-online-learning, cl-online-learning,
  ecl-cl-online-learning, sbcl-cl-random-forest, cl-random-forest,
  ecl-cl-random-forest): ... here.
 2020-07-01 11:19:52 +02:00
Efraim Flashner
a2a7cc9bfc
gnu: lightgbm: Don't use unstable tarball. 
* gnu/packages/machine-learning.scm (lightgbm)[source]: Download using
git-fetch.
[arguments]: Adjust custom 'check phase accordingly.
 2020-06-23 17:02:04 +03:00
Ricardo Wurmus
7146c8c75d
gnu: python-ipython: Use python-prompt-toolkit-2. 
This prevents conflicting variants of python-prompt-toolkit from being
installed, which prevented jupyter from being installed.

* gnu/packages/python-xyz.scm (python-ipython)[propagated-inputs]: Replace
python-prompt-toolkit with python-prompt-toolkit-2.
(python-widgetsnbextension)[propagated-inputs]: Do not use
prompt-toolkit-2-instead-of-prompt-toolkit on python-ipykernel.
(python-ipywidgets)[propagated-inputs]: Do not use
prompt-toolkit-2-instead-of-prompt-toolkit on python-ipython.
(python-jupyter-console)[propagated-inputs]: Do not use
prompt-toolkit-2-instead-of-prompt-toolkit on python-ipykernel.
(prompt-toolkit-2-instead-of-prompt-toolkit): Remove variable.
* gnu/packages/machine-learning.scm (python-iml)[propagated-inputs]: Do not
use prompt-toolkit-2-instead-of-prompt-toolkit on python-ipython.
 2020-06-16 19:33:11 +02:00
Tobias Geerinckx-Rice
d2a7cb46a6
gnu: dlib: Update to 19.20. 
* gnu/packages/machine-learning.scm (dlib): Update to 19.20.
 2020-06-10 04:37:24 +02:00
Guillaume Le Vaillant
5dc04da4df
gnu: sbcl-cl-random-forest: Remove obsolete fix. 
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest)[arguments]: Remove
  'add-sb-cltl2-dependency' phase.
 2020-06-07 10:46:58 +02:00
Edouard Klein
32ba87c14f
gnu: python-prompt-toolkit: Update to 3.0.5. 
* gnu/packages/machine-learning.scm (python-iml)[propagated-inputs]: Pin
implicit python-prompt-toolkit dependency to version 2.
* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Pin implicit python-prompt-toolkit dependency to version 2.
(python-ipywidgets)[propagated-inputs]: Pin implicit python-prompt-toolkit
dependency to version 2.
(python-jupyter-console)[propagated-inputs]: Pin explicit
python-prompt-toolkit dependency to version 2.
(python-prompt-toolkit): Update to version 3.0.5.
[propagated-inputs]: Remove PYTHON-SIX and PYTHON-PYGMENTS.
[home-page]: Adjust to current.
(python-prompt-toolkit-2): New variable.
(prompt-toolkit-2-instead-of-prompt-toolkit): New variable.
(python2-prompt-toolkit): Keep at version 2.
(python-prompt-toolkit-1): Inherit from version 2.

Signed-off-by: Marius Bakke <marius@gnu.org>
 2020-05-30 16:41:39 +02:00
Edouard Klein
bcbd63407e
gnu: python-iml: Move nose from propagated to native input. 
* gnu/packages/machine-learning.scm (python-iml)[propagated-inputs]: Move
PYTHON-NOSE ...
[native-inputs]: ... here.

Signed-off-by: Marius Bakke <marius@gnu.org>
 2020-05-30 16:41:39 +02:00
Edouard Klein
dd003125f7
gnu: python-iml: Use HTTPS home page. 
* gnu/packages/machine-learning.scm (python-iml)[home-page]: s/http/https/

Signed-off-by: Marius Bakke <marius@gnu.org>
 2020-05-26 00:56:19 +02:00
Efraim Flashner
0b96705889
gnu: tensorflow: Fix build with python-3.8. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Also import
python-version from python-build-system. Adjust 'python3.7-compatibility
to also add python-3.8 compatibility. Adjust 'install-python to not
hardcode the python version.
 2020-05-25 14:20:53 +03:00
Marius Bakke
8bf8cd9b85
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/backup.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/guile.scm
	gnu/packages/lisp.scm
	gnu/packages/openldap.scm
	gnu/packages/package-management.scm
	gnu/packages/web.scm
	gnu/packages/xorg.scm
 2020-04-30 23:47:49 +02:00
Ricardo Wurmus
46d07f8472
gnu: kaldi-gstreamer-server: Fix bug. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]: Patch
master_server.py before build.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
cb44af24c8
gnu: kaldi-gstreamer-server: Use Tornado 6. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Replace
python-tornado with python-tornado-6.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
1228c2abcf
gnu: kaldi-gstreamer-server: Update to 0-2.f68cab4. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to
0-2.f68cab4.
[inputs]: Replace python-2 with python-wrapper, python2-pygobject with
python-pygobject, python2-pyyaml with python-pyyaml, and python2-tornado with
python-tornado; remove python2-ws4py-for-kaldi-gstreamer-server and
python2-futures.
 2020-04-29 13:29:16 +02:00
Konrad Hinsen
d9e9a26176
gnu: python-scikit-learn: Make python-joblib a propagated input. 
* gnu/packages/machine-learning.scm (python-scikit-learn)
[native-inputs]: Move 'python-joblib' to ...
[propagated-inputs]: ... here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-28 09:34:29 +02:00
Ricardo Wurmus
b3cf5f8601
gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef. 
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-2.cb227ef.
 2020-04-28 08:44:04 +02:00