Ricardo Wurmus
5970c028f0
gnu: r-bamsignals: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.36.0.
Change-Id: I99174b5d88723a8e6606cf067353f2051bab39d1
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
9b11dc5b0b
gnu: r-aroma-light: Update to 3.34.0.
...
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.34.0.
Change-Id: I88f47a7143e875b60fea818bdb4d7b037345d055
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
c2a3f81a63
gnu: r-annotationhub: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.12.0.
[propagated-inputs]: Remove r-interactivedisplaybase.
Change-Id: I849b7fcc5eea1cc48076b134fddda17bc8461973
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
5c889fbcfd
gnu: r-annotationforge: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.46.0.
Change-Id: Ieabb5d5d3f990d961014003d47eb5dd21656ebc2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
131109f910
gnu: r-annotationfilter: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.28.0.
Change-Id: Ib4cad5054f1cf174ee2ecb589f8442e9dc86e5dc
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
d90bc96e17
gnu: r-annotationdbi: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.66.0.
Change-Id: Ia103d540fc7e872fd96bffa044076c969c072319
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
cb56dc94bc
gnu: r-annotate: Update to 1.82.0.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.82.0.
Change-Id: I9940d1837c62c2421513021fe12fb87e629ba0df
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
55dca2271e
gnu: r-affxparser: Update to 1.76.0.
...
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.76.0.
Change-Id: I9c412f0ef4f29d50e07f32a6944f13ba470cc6c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
563de39417
gnu: r-affyio: Update to 1.74.0.
...
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.74.0.
Change-Id: If694dbba3f447019bb822ba94ff73976b77864c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
2299ed5417
gnu: r-affycoretools: Update to 1.76.0.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.76.0.
Change-Id: I486f8aca7a0d2a9640b3ae05ba50fdc6420fde24
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
b563dc47fd
gnu: r-affycontam: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.62.0.
Change-Id: Ia2688e906b16b11d96925beded22d47cbb3f67c0
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
fdd6664fb1
gnu: r-affycomp: Update to 1.80.0.
...
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.80.0.
Change-Id: I544133d53f46e156cd0483c27a88c56f31be4af4
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
65e26fef18
gnu: r-affy: Update to 1.82.0.
...
* gnu/packages/bioconductor.scm (r-affy): Update to 1.82.0.
Change-Id: Ie17dffe76198632a8e1ea6f7a0f1c9eb68049b98
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
0949c9f244
gnu: r-nebulosa: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.14.0.
Change-Id: I9d86fabf46fe139c6e6f210f46dafd5132c5adad
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
c322655c7d
gnu: r-italics: Update to 2.64.0.
...
* gnu/packages/bioconductor.scm (r-italics): Update to 2.64.0.
Change-Id: Ibed68d0d8209db3f5a76c507a58c76389d546af2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
a32bba3fb6
gnu: r-isoformswitchanalyzer: Update to 2.4.0.
...
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.4.0.
[propagated-inputs]: Add r-pwalign.
Change-Id: I1e6f6767698f2f97cfc53637987a824a6d80609d
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
b4d31f1a10
gnu: r-iranges: Update to 2.38.0.
...
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.38.0.
Change-Id: I9e1a24614dcfc179a5659b3bccdde26cb7b06dab
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
f4c03a251e
gnu: r-infercnv: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.20.0.
[inputs]: Remove python.
Change-Id: Ib8666fd27a504c824c747cc27960bde490459544
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
bec276a979
gnu: r-ideoviz: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.40.0.
Change-Id: I5b40d23a9955c9844eee99525977fdf72d7f31a8
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
d140d8a1c9
gnu: r-bluster: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.14.0.
Change-Id: I1648c28f20ff3649face1ac35ad76301591c5989
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
6b72971be3
gnu: r-dyndoc: Update to 1.82.0.
...
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.82.0.
Change-Id: Ib44ec47e918a680d271e8c8ea81db745f1f06325
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
657c030a57
gnu: r-dss: Update to 2.52.0.
...
* gnu/packages/bioconductor.scm (r-dss): Update to 2.52.0.
Change-Id: I8c0e6f9d232d74037efc76db8e11cc6ae1035d63
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
071eedcbc1
gnu: r-dropletutils: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.24.0.
Change-Id: I95b2770d95b73ca6aee987b4dadaf9d125bf5ba8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
fa46220283
gnu: r-drimseq: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.32.0.
Change-Id: Iff51e039659421421e54bf47765fb6e0d5ae8508
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
a841f1f692
gnu: r-dmrcate: Update to 3.0.0.
...
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.0.
[propagated-inputs]: Add r-annotationhub.
Change-Id: I1b91adbb7d766d3301d2cd03b933c57fe755dd8a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
7f4e7bff48
gnu: r-derfinderhelper: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.38.0.
Change-Id: Iefab596f9f9d795d0fbcb85c2e01cea0f0263877
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
d9002c14f9
gnu: r-derfinder: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.38.0.
Change-Id: I4f73fe46311540dd31e3eb9d58114a555cada8ce
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
4b2e1b69cd
gnu: r-densvis: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.14.0.
Change-Id: I7d8d13236a8e2a87dd6ab1cb6fac7277c615c170
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
5c93327cd9
gnu: r-delayedarray: Update to 0.30.0.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.0.
Change-Id: I2b823b0f6da15420f9f208932e2306cde7c6de0e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
fbfb298d0e
gnu: r-degreport: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.40.0.
Change-Id: I481637b9d661addbf2bc3ebaf1d396fc0087561e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
622dc493e7
gnu: r-deepsnv: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.50.0.
Change-Id: Idb65967f3c76960b1db761c662adda3c84586abd
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
8e5486f5bd
gnu: r-decoupler: Update to 2.9.7.
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* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.9.7.
[propagated-inputs]: Add r-biocparallel and r-parallelly.
Change-Id: I8218c03aa7cfea84b9df58ff17500f9d3a6ecac5
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
12f94fb1ae
gnu: r-deconvr: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.10.0.
Change-Id: Ia56bc18028860d0aaeb78d479d5b7b162b5908b6
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
ebb70fe9b6
gnu: r-decontam: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.24.0.
Change-Id: Ia740e8953bd970ba9454944da2459a8d39c990bf
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
f1dbdc8522
gnu: r-deconrnaseq: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.46.0.
Change-Id: I637bcbd43e55d0125a2273e2431b9effebb4d409
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
aec3a47c8c
gnu: r-decomptumor2sig: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.20.0.
Change-Id: I4f7cd015a500b904d725a9098907253b81e7d57c
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
40e85015aa
gnu: r-decipher: Update to 3.0.0.
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* gnu/packages/bioconductor.scm (r-decipher): Update to 3.0.0.
[propagated-inputs]: Remove r-rsqlite.
Change-Id: I8fd3b7c179b7d4e06ad1e7f592add40b77061eee
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
199305df78
gnu: r-dearseq: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.16.0.
Change-Id: I34f7edb001fb1f63e67b5e2c8378f746aa8b7ad8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
94b4335bd5
gnu: r-damefinder: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.16.0.
Change-Id: I934f27e813e05d5cfef32eb0bec0bd784a200c5a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
091e0144a2
gnu: r-dama: Update to 1.76.0.
...
* gnu/packages/bioconductor.scm (r-dama): Update to 1.76.0.
Change-Id: Ia2f960bffb184165a8aecfdb6673c03f4f10fc57
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
ba9b588001
gnu: r-cummerbund: Update to 2.46.0.
...
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.46.0.
Change-Id: Ia93d7cb81143bfd418d943717ee1cd5e748a0902
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
6134ddd012
gnu: r-coverageview: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.42.0.
Change-Id: I357e71ea80487c2ea7d6c0b8444684567c901af1
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
5c83d7b88c
gnu: r-coregx: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.8.0.
Change-Id: I1d33a891228edf133d8cb0948bb605df2c9c5765
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
cf92a83ec2
gnu: r-cellid: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.12.0.
Change-Id: I620fe4d005eb28786f3d6b50b3459953f23e8184
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
807f16e459
gnu: r-cardelino: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.6.0.
Change-Id: I2b3b37fb959546ae218f03cd727a32a1808a224b
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
5ae5bc6a87
gnu: r-breakpointr: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.22.0.
Change-Id: If1c9422eb8780bbeafb5054c5b0533411f40590d
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
94cb2cee11
gnu: r-biocgenerics: Update to 0.50.0.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.50.0.
Change-Id: I2b44832f6cde8d943db8307050efa6b68bb814b4
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
eaeab2d12d
gnu: r-biocversion: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.19.1.
Change-Id: Ia707fe47c7749cc63fa057dddcc0d49f7443c2a1
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
06f7d75e10
gnu: r-barcodetrackr: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.12.0.
Change-Id: Ia20e92c383c7a89e1d6accba98cf879cd57de25a
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
89c8795fb8
gnu: r-banocc: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.28.0.
Change-Id: I90a50fc574f2c064375acad39315b167c5cb3586
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
47ab649ecd
gnu: r-bandits: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.20.0.
Change-Id: Icaa2655549d255e2894ed15977f0e5f0c9041fc4
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
3f1b37c851
gnu: r-bambu: Update to 3.6.0.
...
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.6.0.
Change-Id: I206c2867ba40bba100bd23c7d861bc3be778e09f
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
23d6984ba1
gnu: r-badregionfinder: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.32.0.
Change-Id: I396ff2488562d13c93280082e93e5de3821c93da
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
ef47716688
gnu: r-bader: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-bader): Update to 1.42.0.
Change-Id: I6fa42bf109b5e5bfad1eb4f032e453475af42c2e
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
2f1fe68bee
gnu: r-basespacer: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.48.0.
Change-Id: I9e2b2cb3a9497453e2653cdbe0288987ea187f0a
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
48c7540a27
gnu: r-bags: Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-bags): Update to 2.44.0.
Change-Id: I4d7438dca325f8814d7c3bc644aa79c2ebab9d22
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
204c59d2fd
gnu: r-baalchip: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.30.0.
[inputs]: Remove perl.
Change-Id: I42125e71f8985a4b9d9e797b1178386d2f9d6451
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
e1c3e7b8d0
gnu: r-awst: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-awst): Update to 1.12.0.
Change-Id: I1d9bdf4378b978bf9a3ee6e996c78eb25c2e10ad
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
6622a40596
gnu: r-awfisher: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.18.0.
Change-Id: I0f28eefaa791426014d2ed3268aa6a8cff6ac6ef
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
030591f684
gnu: r-attract: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-attract): Update to 1.56.0.
Change-Id: Ic9657b83e27fd228ef454b4f455fbb79002f056e
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
00c6334309
gnu: r-atsnp: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.20.0.
Change-Id: I36f9baa45b2483bcbb0c9a25c5b938c4a0df16fa
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
cd616ff646
gnu: r-atena: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-atena): Update to 1.10.0.
[propagated-inputs]: Add r-cli, r-genomicfeatures, and r-matrixgenerics.
Change-Id: I2aef381c001638e111125cd60b07b5fc7b9e01a9
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
499ca07277
gnu: r-asset: Update to 2.22.0.
...
* gnu/packages/bioconductor.scm (r-asset): Update to 2.22.0.
Change-Id: Ie3984d92c32734b258f4106d9bef01bef060e089
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
537c1879a8
gnu: r-assessorf: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.22.0.
Change-Id: Ic2f5c1a2e5443e69574e30abe86ae3a19c2156ea
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
2fc6d3bf31
gnu: r-aspli: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.14.0.
[propagated-inputs]: Add r-txdbmaker.
Change-Id: Ib60f87bf6166c68c6baded4e8555bafcf9573100
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
e9d16dec70
gnu: r-asics: Update to 2.20.0.
...
* gnu/packages/bioconductor.scm (r-asics): Update to 2.20.0.
Change-Id: I6a778323b57e99a8bc8c1a2e2227079d9bdaff1c
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
ddddc13f93
gnu: r-asgsca: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.38.0.
Change-Id: I3f22548eae87db3eeb6691b45c30ab2edd452aac
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
dffc5cf95c
gnu: r-aseb: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.48.0.
Change-Id: Ifb4450374fa2831bab9e360de6ec12f7c22f47d9
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
f4c71864d5
gnu: r-asafe: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.30.0.
Change-Id: Id54647b1dadf071ea51c180ca50e5386a6078188
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
3f31823f41
gnu: r-arrayquality: Update to 1.82.0.
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* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.82.0.
Change-Id: I94b389cd121cb3748ad7a938c37b0c5152820ba3
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
a0cef9b470
gnu: r-arraymvout: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.62.0.
Change-Id: Ic8cc9efc851af7471125e2ff2084d685c099d32b
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
db7d9feb79
gnu: r-arrayqualitymetrics: Update to 3.60.0.
...
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.60.0.
Change-Id: Ia67c533b2b5c227a8cd2acaac8ab717517cd5d05
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
e17b3add0d
gnu: r-arrayexpress: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.64.0.
Change-Id: I01be57f62c13271442c4fb174ad923e29f8f63e8
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
98eebefbf8
gnu: r-antiprofiles: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.44.0.
Change-Id: Iac22dec83898624e88ad67983d4809729d6e2d09
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
98890f8da7
gnu: r-annmap: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.46.0.
Change-Id: I2f693693c75b2729aa81c593c0ff3c07cc4f486f
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
22784fbacf
gnu: r-anf: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-anf): Update to 1.26.0.
Change-Id: I0027bfaa713cf5b75c9ec52d72715c1d56955b92
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
28cbac7461
gnu: r-aneufinder: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.32.0.
Change-Id: I1e3061cf514b735c84abc8b4e850236f493dd75d
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
416fb74e92
gnu: r-altcdfenvs: Update to 2.66.0.
...
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.66.0.
Change-Id: I4d6881076a68394206501f254045ff59a2b4bcec
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
d237852199
gnu: r-alpsnmr: Update to 4.6.0.
...
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.6.0.
Change-Id: Ia35eda0125de276989767b8d663a128f3014582a
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
b6f742d0f6
gnu: r-alphabeta: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.18.0.
Change-Id: I9970a01aec806faad204033d9ece392becfaca99
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
70ac81d484
gnu: r-alevinqc: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.20.0.
Change-Id: Ib24ff6f3db37bf5d746c745999b768e1ec89dca3
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
af81afffd5
gnu: r-aldex2: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.36.0.
Change-Id: Iab362c11ad5960901eaefa016cda09cf65d23355
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
47d9a75f1b
gnu: r-anvil: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.16.0.
[propagated-inputs]: Add r-biocbaseutils and r-yaml.
Change-Id: I30f38ca310819d75e5f57e381b0845632b022ff7
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
736a73dec9
gnu: r-annotationhubdata: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.34.0.
Change-Id: I6e786c6c087b70650b3d0d84d14513a5856a08f2
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
daae14ea1d
gnu: r-animalcules: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.20.0.
[propagated-inputs]: Add r-ggforce and r-tidyr.
Change-Id: Ifc2493d7de069ba05ab79e6b8aeb0302325c9603
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
6ed0d665aa
gnu: r-ancombc: Update to 2.6.0.
...
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.6.0.
Change-Id: I925595eb4d2191a75880cc28188d9d71e55bebd9
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
e6f568abde
gnu: r-anaquin: Update to 2.28.0.
...
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.28.0.
Change-Id: I4ab5cff777b72696008df29ad3ef12f35e3106db
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
a10b2020ca
gnu: r-amaretto: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.20.0.
Change-Id: I22c13aa35f82397a9af41f44f5f335836b69e97d
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
530f6d12d9
gnu: r-amplican: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.26.0.
[propagated-inputs]: Add r-pwalign.
Change-Id: I753f06199b24411565122e188da70e87278d7aa2
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
e623b114d2
gnu: r-amountain: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.30.0.
Change-Id: I17e8eedccc79be973bba942ffbfd8ce24d89e43e
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
01e031f6c5
gnu: r-airpart: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-airpart): Update to 1.12.0.
Change-Id: Iea2277db96d4b8785e0a0199ca08256699c31777
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
3a6e6347c2
gnu: r-aims: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-aims): Update to 1.36.0.
Change-Id: Iff2af60c0b6a0fc575d142a10f0156d520efd802
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
73e16238c8
gnu: r-agimicrorna: Update to 2.54.0.
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* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.54.0.
Change-Id: I16294ff145be59bb5499ad16772cd4efe72347f2
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
aa54d5f36f
gnu: r-adductomicsr: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.20.0.
Change-Id: I048fb7fbc173ce6883d80ca097b75b69704e2750
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
1406bc656a
gnu: r-agilp: Update to 3.36.0.
...
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.36.0.
Change-Id: Iddd5266a7f88a3a8eae567151b14010433f98c61
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
c30eaed62b
gnu: r-aggregatebiovar: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.14.0.
Change-Id: I5a510e12942e9afcd29b52f89d737a8a5707e3be
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
747c727c8f
gnu: r-agdex: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.52.0.
Change-Id: I2facf3bc4e3d504804fed3b42b26d6fce393ea3b
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
fe2f93f9fc
gnu: r-affyrnadegradation: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.50.0.
Change-Id: Iaa9846636b2cb4c1a303f5190be4d3e3f9ee9240
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
4dc97b0c46
gnu: r-affyplm: Update to 1.80.0.
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* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.80.0.
Change-Id: I2c16761eb1ad8cb2ffc087f6b928686964157efd
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
e5ab4f1dca
gnu: r-affylmgui: Update to 1.78.0.
...
* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.78.0.
Change-Id: If26c0573c98b3d1bab684127e969489ae0c8c51e
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
8c028e21bc
gnu: r-affyilm: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.56.0.
Change-Id: I118c3fc0040100233d79539d5f3c24836e882f4c
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
32f127f915
gnu: r-affixcan: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.22.0.
Change-Id: Idf8886497dfabcd10502a36aa002ba7a83e46938
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
aa5177a090
gnu: r-adsplit: Update to 1.74.0.
...
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.74.0.
Change-Id: Ib471d6086dfc782ca4ce5efaa8d7f59e601d3e41
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
128d0ead08
gnu: r-adimpute: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.14.0.
Change-Id: I888c1281fe44b7877fe01ad10cbca63a30ba337c
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
6a698c1162
gnu: r-adamgui: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.20.0.
Change-Id: I16b63e3e98eddfe0e038b40062d38524881b8e41
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
21b9cd0355
gnu: r-adam: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-adam): Update to 1.20.0.
Change-Id: I417244fa99e124a285fb020e758ba471d6620d4e
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
e28ff2ed30
gnu: r-adacgh2: Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.44.0.
[propagated-inputs]: Remove r-snapcgh.
Change-Id: I47c7a0d00d32cf71ec2f16844ab3a60d120cfc3f
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
5d1d4936b1
gnu: r-absseq: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-absseq): Update to 1.58.0.
Change-Id: I9433d9307416e967a70587eee5b5d891c270f8ee
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
1fdc5eba8a
gnu: r-abarray: Update to 1.72.0.
...
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.72.0.
Change-Id: I207f652b0c5f6d9069de675f245f4fb471d560e9
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
6dbc09c6d0
gnu: r-tximportdata: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-tximportdata): Update to 1.32.0.
Change-Id: If18a4d7d8b6877beedec24cb17a989e7485af8c8
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
6332e4ed23
gnu: r-tcgabiolinksgui-data: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.24.0.
Change-Id: Ie34a052ff74d193f7472ef25fa9fabf6dbbb19a7
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
0148d18e4b
gnu: r-sesamedata: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.22.0.
Change-Id: I7b57169a24d3f210f9d5373d375c1fcdc8a32b76
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
49912ae08e
gnu: r-parathyroidse: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.42.0.
Change-Id: I1ee5d4eb8d2f511cd437851aa6fd17b23f85b548
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
8c4929306f
gnu: r-curatedtcgadata: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.26.0.
Change-Id: Ia96fe42b0b41043879cff80d99c56b48afb06e5b
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
a14d5f02b9
gnu: r-gagedata: Update to 2.42.0.
...
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.42.0.
Change-Id: I3a8be1fb8255f621b6481dabdeac5460b90ebbb7
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
eca80e2bf7
gnu: r-affydata: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.52.0.
Change-Id: Ibbdeca7d8ed91da88d14f547403d43c8b9e45775
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
aa538cc886
gnu: r-all: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-all): Update to 1.46.0.
Change-Id: I20d1f918a24e47cee853668b736639369c1e904e
2024-05-08 12:53:17 +02:00
Ricardo Wurmus
f27c6caa8c
gnu: r-hsmmsinglecell: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.24.0.
Change-Id: Ie94c7cd87ac4cdaad47035cb110fb58bb6f68126
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
5b5c134658
gnu: r-pasilla: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.32.0.
Change-Id: I90a11b64f4cba746c9d5d70bd7746497fe3781a6
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
7d5f112600
gnu: r-msigdb: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-msigdb): Update to 1.12.0.
Change-Id: Ia63cb5d074afcd5b6c597d22c4e5c4f14b59303d
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
46eb71b653
gnu: r-msexperiment: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-msexperiment): Update to 1.6.0.
[propagated-inputs]: Add r-biocgenerics and r-dbi.
Change-Id: I1acadf9e878f4593baf583933c5ccca3daf7ec0d
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
7e05fa61b0
gnu: r-msdata: Update to 0.44.0.
...
* gnu/packages/bioconductor.scm (r-msdata): Update to 0.44.0.
Change-Id: I479c861eceb1f50c91d589118a68e217236e89e4
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
27c00a789e
gnu: r-minfidata: Update to 0.50.0.
...
* gnu/packages/bioconductor.scm (r-minfidata): Update to 0.50.0.
Change-Id: I6504e8f6ffe57ba1cdf538d2f60c21ff26b06407
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
efc85dfb4d
gnu: r-mousegastrulationdata: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.18.0.
Change-Id: I4b005c54451d7c306cb4137e4fe668c6e53c840a
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
16e58db1ba
gnu: r-methylclockdata: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-methylclockdata): Update to 1.12.0.
Change-Id: Ibfa765d93c0ed2005f7fb6f630c3104cd30e8371
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
3b1f4f041d
gnu: r-macrophage: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.20.0.
Change-Id: I589dd25948fedd3bbe91fddada8e155567cf2d93
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
89a647662c
gnu: r-jaspar2016: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-jaspar2016): Update to 1.32.0.
Change-Id: I826a8a93e0adce98b7ad767c8fbaa7ffb957c554
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
5c28a456e7
gnu: r-italicsdata: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.42.0.
Change-Id: I10947b136b273e06b9ac88bf1786b62b0a6739f5
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
cd0b5d0892
gnu: r-illumina450probevariants-db: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.40.0.
Change-Id: Ic18b5dcdda0e002375bb9ed43944168f78eb2906
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
3f122a9a1a
gnu: r-hdcytodata: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.24.0.
Change-Id: Icf2ad5519ee710c3b275f2f608a2bc7674bf3805
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
38d81984dc
gnu: r-genomationdata: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.36.0.
Change-Id: Idf6dbb8e87ed124d9dd3ae10ff3ea78c58b22496
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
66f99b50e5
gnu: r-genelendatabase: Update to 1.39.0.
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* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.39.0.
Change-Id: I0630a8fed9f28ad5883a8bb1e4f3c77f16e7ac34
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
76805a5744
gnu: r-flowsorted-blood-epic: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.8.0.
Change-Id: I000d233d1a78f36e8daed08f0112cc592b2f99f6
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
aded842e92
gnu: r-flowsorted-blood-450k: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.42.0.
Change-Id: I07c3a8640e8b7ca9e36b0a3e81d9831fc4d7299e
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
f5a724eb16
gnu: r-copyhelper: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.36.0.
Change-Id: I4726f8bf6c654b03ee4eb84ae697e7844d06e164
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
b53302805e
gnu: r-chromstardata: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.30.0.
Change-Id: I19aa49ac9d6499d2cea91b0d45fd04f10511b18f
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
cfb000d7e5
gnu: r-champdata: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-champdata): Update to 2.36.0.
Change-Id: I5387b2e3722e95911a5355cc56d83086ef205a4c
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
9e2ac92d2f
gnu: r-celldex: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.14.0.
[propagated-inputs]: Add r-alabaster-base, r-alabaster-matrix, r-alabaster-se, r-dbi,
r-gypsum, r-jsonlite, r-matrix, and r-rsqlite.
Change-Id: Iba166c14dae781e14a9762dc3480ece5ba12a802
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
4bcc9c836d
gnu: r-breastcancervdx: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-breastcancervdx): Update to 1.42.0.
Change-Id: I52de3659b7d07d03491091ef0de4ee5d305ec4eb
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
0e2bfbce09
gnu: r-breakpointrdata: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.22.0.
Change-Id: I111126dae913bd01e5a3f87551108e6ba1733b89
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
9d1c351076
gnu: r-biscuiteerdata: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.18.0.
Change-Id: Icc31cf376b8f2f085cc045c02383164128f0f009
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
a4e4f9cf21
gnu: r-bodymaprat: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-bodymaprat): Update to 1.20.0.
Change-Id: I8eb8b9e71cb1068e058b3e827096f25607ac5f01
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
62e7c74453
gnu: r-bladderbatch: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.42.0.
Change-Id: I49350259fef502e59368e4dc0894dcf52db33917
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
5b87013c93
gnu: r-bcellviper: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.40.0.
Change-Id: I5d7af04599d79147eaa2626aead238179e78cfde
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
6ac2448400
gnu: r-arrmdata: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.40.0.
Change-Id: I4695eec74200dd5deac20a71c020a9517e56f9a7
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
fa4635d3ad
gnu: r-aneufinderdata: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.32.0.
Change-Id: I91727bf7974078374a2bf9ca935b9df2ca60201f
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
4add20468d
gnu: r-adductdata: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.20.0.
Change-Id: I9f795cf931e90fa5f8331a5d3ffa855b56355ca6
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
378904acf5
gnu: r-pfam-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.19.1.
Change-Id: If95fa52bdfeb87ed606b9b7564ce73606a8616c8
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
7eabe6d69d
gnu: r-escape: Update to 2.0.0.
...
* gnu/packages/bioconductor.scm (r-escape): Update to 2.0.0.
[propagated-inputs]: Remove r-broom, r-data-table, r-matrix, and r-rlang; add r-aucell,
r-ggdist, r-ggpointdensity, and r-seuratobject.
Change-Id: I7fa2ea581a85a579feeac50e1e4b32ac4fa83d7b
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
a5729ea6ae
gnu: r-org-mm-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.19.1.
Change-Id: I3ae90e3d60941caf901d49c91662f38900588a27
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
afb439ddf1
gnu: r-org-hs-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.19.1.
Change-Id: Ib120639d743ba4abd0a129f968bd09a3f9c62775
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
b0cd3610d3
gnu: r-org-dr-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.19.1.
Change-Id: Ib5d87389f017f2a4ed106ecaef01f82a689ad46e
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
1e295ff0d3
gnu: r-org-dm-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.19.1.
Change-Id: I3c19de819fe694d9af11c4263132338340fccc47
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
30be3f2fc8
gnu: r-org-ce-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.19.1.
Change-Id: If5ae28c7f68194c7e6dc1b849932417ec1679ec9
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
d85a5a2047
gnu: r-go-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.19.1.
Change-Id: I894831796ac3121795d76df059b10680e9545ba0
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
5cac1ec6c5
gnu: r-genomeinfodbdata: Update to 1.2.12.
...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.12.
Change-Id: I185d52161ec45de7d03fedeb51f2a28864df9903
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
44c5036af2
gnu: r-reactome-db: Update to 1.88.0.
...
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.88.0.
Change-Id: I80b58a45e8265e82e7a84d8d428fc4339fd926a7
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
43b32ab2e6
gnu: r-org-sc-sgd-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.19.1.
Change-Id: Iee6d57797bb3dde152ce0e22a3ed25c30c039a09
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
487cf830ae
gnu: r-org-bt-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.19.1.
Change-Id: If37dc4be3287f0729b2e2d4aecef6745700b429c
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
37696fafac
gnu: r-org-eck12-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.19.1.
Change-Id: I0f3a84abd0dff114231c341e776b542a7b047176
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
a1852df9ff
gnu: r-mafh5-gnomad-v3-1-2-grch38: Update to 3.15.1.
...
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): Update to 3.15.1.
Change-Id: I6b83a3701c2a4282864bf648677b258c1315598c
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
8d531f9afb
gnu: Add r-ucsc-utils.
...
* gnu/packages/bioconductor.scm (r-ucsc-utils): New variable.
Change-Id: I02eebaa69a57b8bbd97b38ae7d62799971f70d45
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
61a5676a9d
gnu: r-biocpkgtools: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.22.0.
Change-Id: I4afb2530597279d9f2b6c01fc7d76c95c88aa629
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
b9040cb312
gnu: r-debcam: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.22.0.
Change-Id: Iec96dd28f8adc4d8c070f2e50098a02a4582ec33
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
45b4f78687
gnu: Add r-txdbmaker.
...
* gnu/packages/bioconductor.scm (r-txdbmaker): New variable.
Change-Id: I2e236b42117525a48917604ea14396ff661b72f7
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
cf3471cc9e
gnu: Add r-pwalign.
...
* gnu/packages/bioconductor.scm (r-pwalign): New variable.
Change-Id: I6a12f48c5de948292af7c6888b12e849e1f42db7
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
155ac301f7
gnu: Add r-psmatch.
...
* gnu/packages/bioconductor.scm (r-psmatch): New variable.
Change-Id: I7b3071424563b713912016301f551ce00aceddea
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
6e126301b4
gnu: Add r-gypsum.
...
* gnu/packages/bioconductor.scm (r-gypsum): New variable.
Change-Id: Id3bdf044d9a885605b1b2b2ceba32398da6ddec0
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
2c6bd40baf
gnu: Add r-alabaster-se.
...
* gnu/packages/bioconductor.scm (r-alabaster-se): New variable.
Change-Id: I698a2d678e4819d9ac4b2668a2f7ef2063f8d674
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
1dd2cce88f
gnu: Add r-alabaster-sce.
...
* gnu/packages/bioconductor.scm (r-alabaster-sce): New variable.
Change-Id: I8121614d5b93922555b6cb5fd7a05d68980aff20
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
092609b36a
gnu: Add r-alabaster-ranges.
...
* gnu/packages/bioconductor.scm (r-alabaster-ranges): New variable.
Change-Id: I99e1e6549537acb37de2788961dbd17ef6c1de27
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
ba8fbb89e4
gnu: Add r-alabaster-matrix.
...
* gnu/packages/bioconductor.scm (r-alabaster-matrix): New variable.
Change-Id: If5b438983a70f8f81e3442d8a1cb3821f4e3489a
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
8031162607
gnu: Add r-alabaster-base.
...
* gnu/packages/bioconductor.scm (r-alabaster-base): New variable.
Change-Id: Ifb9fe95fb237d12dadf134278f130e614925b5ec
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
9bd400722d
gnu: Add r-alabaster-schemas.
...
* gnu/packages/bioconductor.scm (r-alabaster-schemas): New variable.
Change-Id: I3d9218af9b4408e3375f9ccd98a4c95935b2c273
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
1117e96d9f
gnu: r-cytoml: Update to 2.16.0.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.16.0.
Change-Id: I14ae3ae0d5ff8d66b964651b6fe3753d934f1554
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
c29bc85ec6
gnu: Add r-jsonvalidate.
...
* gnu/packages/cran.scm (r-jsonvalidate): New variable.
Change-Id: I1393fb3b4034f870663dc887be783e8aaf4c9884
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
66e179ac18
gnu: r-xts: Remove vignette outputs.
...
* gnu/packages/cran.scm (r-xts)[source]: Add snippet to remove generated
files.
Change-Id: Iba82b900e632e2cf5a99c9deb807bae6cf3dabcd
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
628d007b83
gnu: r-desctools: Set HOME variable.
...
* gnu/packages/statistics.scm (r-desctools)[argumonts]: Add phase 'pre-check.
Change-Id: Icec222a5cdcb2c95ad7bd600ce5188bd5588bb4e
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
79c2b32337
gnu: r-with-tests: Update to 4.4.0.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.4.0.
Change-Id: If77c95867cc16141c397e48c899a9ade3e89876d
2024-05-08 12:53:14 +02:00
Artyom V. Poptsov
2bea3f2562
gnu: kubo: Unbundle go-cidutil, go-log and go-ipfs-util.
...
* gnu/packages/ipfs.scm (kubo) [source]: Delete "go-cidutil", "go-log",
"go-ipfs-util" from bundled packages.
[inputs]: Add go-github-com-ipfs-go-cidutil, go-github-com-ipfs-go-log,
go-github-com-ipfs-go-log-v2, and go-github-com-ipfs-go-ipfs-util.
Change-Id: I3e49deb9572c6ac471210a392a52117fd0b9ce1a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:07:21 +01:00
Artyom V. Poptsov
231ffaf1ac
gnu: Add go-github-com-ipfs-go-cidutil.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-cidutil): New variable.
Change-Id: I6077fc00d22b541a959a6623c8666c35288ca105
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:05:05 +01:00
Artyom V. Poptsov
6f60f90c15
gnu: Add go-github-com-ipfs-go-log.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log): New variable.
Change-Id: I5b5b1d594b5458a7ca156346c6a6dc3c8d5bd69d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:05:05 +01:00
Artyom V. Poptsov
58cc52f2dc
gnu: Add go-github-com-ipfs-go-log-v2.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log-v2): New variable.
Change-Id: Id6d85bfa883670345420c21937681ae2844f6263
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:03:02 +01:00
Artyom V. Poptsov
8cb146a3e6
gnu: Add go-github-com-ipfs-go-detect-race.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-detect-race): New variable.
Change-Id: Ic65c12a717a50c4309bc89d29d158a43fbc0c81a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 23:51:25 +01:00
Artyom V. Poptsov
f669a24a95
gnu: Add go-github-com-ipfs-go-ipfs-util.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-util): New variable.
Change-Id: Ic496282dc62b7c0d5bd9017aff6a3818b2661309
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 23:51:16 +01:00
Sharlatan Hellseher
2795d0f3e7
gnu: kubo: Unbundle go-bazil-org-fuse.
...
* gnu/packages/ipfs.scm (kubo) [source]: Remove vendor/bazil.org.
[inputs]: Add go-bazil-org-fuse.
Change-Id: Ie55e609c15a6eaca7ec32521a55620bf674af240
2024-05-07 23:18:48 +01:00
Sharlatan Hellseher
1f6c4f226d
gnu: Add go-bazil-org-fuse.
...
* gnu/packages/golang-xyz.scm (go-bazil-org-fuse): New variable.
Change-Id: I933d90dca50110f53831febc81d587c14973934f
2024-05-07 23:18:48 +01:00
Sharlatan Hellseher
330a133b85
gnu: go-git-sr-ht-emersion-go-scfg: Move to golang-xyz.
...
* gnu/packages/golang.scm: (go-git-sr-ht-emersion-go-scfg): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here
Change-Id: I75cc680543313e41abc86e71d48a9be9e9ce694a
2024-05-07 23:18:48 +01:00
Sharlatan Hellseher
74b2a9d5a4
gnu: go-git-sr-ht-emersion-gqlclient: Move to golang-web.
...
* gnu/packages/golang.scm (go-git-sr-ht-emersion-gqlclient): Move from
here ...
* gnu/packages/golang-web.scm: ... to here.
Change-Id: I2b07dc198f6710680da0430e5f302893060e37b8
2024-05-07 23:18:47 +01:00
Sharlatan Hellseher
072b06f2f3
gnu: go-git-sr-ht-sircmpwn-getopt: Move to golang-xyz.
...
* gnu/packages/golang.scm (go-git-sr-ht-sircmpwn-getopt): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here.
Change-Id: Ic53ec6828f7389326191b659dd16b623e6d1af43
2024-05-07 23:18:47 +01:00
Sharlatan Hellseher
9716914d4e
gnu: web: Remove syncthing module from used modules.
...
There is no more mudule from syncthing which needs to be imported
anymore.
* gnu/packages/web.scm: Remove (gnu packages syncthing) module.
Change-Id: I688e72009e2daa5e75eaeaaeff9026ca888b266b
2024-05-07 23:17:46 +01:00
Sharlatan Hellseher
fb44cd89df
gnu: go-github-com-nbrownus-go-metrics-prometheus: Disable tests.
...
* gnu/packages/golang-xyz.scm (go-github-com-nbrownus-go-metrics-prometheus):
Disable all tests.
Change-Id: I7f340fd1e58edc0203068c762a1bbc798003a84b
2024-05-07 21:33:45 +01:00
Sharlatan Hellseher
aa1090713a
gnu: tmsu: Enable test suite.
...
* gnu/packages/file-systems.scm (tmsu): Fail over to the project's
Makefile targets.
[arguments]: <#:go>: Use go-1.21.
<#:phases>: Add 'adjust-makefile' phase. Use custom 'build, 'check and
'install phases.
Change-Id: Ice920f2196123f1a1f1561879ab919bc0d4e8512
2024-05-07 21:33:44 +01:00
Sharlatan Hellseher
c7bd735bc4
gnu: sqls: Use go-1.21.
...
Merge all inputs into native-inputs since the output result of the
package is an executable that does not require sources from Golang
modules to be available after installation.
* gnu/packages/databases.scm (sqls):
[arguments]: <#:go>: Use go-1.21.
[inputs]: Remove go-github-com-go-sql-driver-mysql,
go-github-com-lib-pq, go-github-com-mattn-go-runewidth,
go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter,
go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2,
go-golang-org-x-crypto, go-golang-org-x-xerrors, and
go-gopkg-in-yaml-v2.
[native-inputs]: Add go-github-com-go-sql-driver-mysql,
go-github-com-lib-pq, go-github-com-mattn-go-runewidth,
go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter,
go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2,
go-golang-org-x-crypto, go-golang-org-x-xerrors, and
go-gopkg-in-yaml-v2.
Change-Id: I9312a483dfa954b5f0ad4cfac04b5153570bf571
2024-05-07 21:33:44 +01:00
Sharlatan Hellseher
e582f27a53
gnu: Add go-github-com-msteinert-pam-v2.
...
* gnu/packages/golang-xyz.scm (go-github-com-msteinert-pam-v2): New variable.
Change-Id: I7dfcb72703722f894eb52c603f02e64e7350f53a
2024-05-07 21:33:44 +01:00
Jesse Eisses
243ff41195
gnu: Add soju.
...
* gnu/packages/irc.scm (soju): New variable..
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I18b7e574339e98fdf2623338aac1635c8e727699
2024-05-07 21:33:44 +01:00
Jesse Eisses
13912821a2
gnu: go-github-com-matttproud-golang-protobuf-extensions-pbutil: Update to 2.0.0.
...
* gnu/packages/syncthing.scm (go-github-com-matttproud-golang-protobuf-extensions-pbutil):
Update to 2.0.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ia9f1acacd337b95526ee0b9b7b31f1de598f30d3
2024-05-07 21:33:44 +01:00
Jesse Eisses
b2054615da
gnu: go-github-com-prometheus-client-golang: Update to 1.17.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-client-golang):
Update to 1.17.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I4d3e9d3e61991f94fc2a7bd4b85e7d4010c4b508
2024-05-07 21:32:36 +01:00
Jesse Eisses
2359feb658
gnu: go-github-com-prometheus-common: Update to 0.45.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-common): Update to
0.45.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic03cdaf87253df869e1d791336189032fac0d625
2024-05-07 15:38:28 +01:00
Jesse Eisses
b7800aa34f
gnu: go-github-com-prometheus-client-model: Update to 0.5.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-client-model):
Update to 0.5.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iebb57390b99a4ed2567588872a9745a69aae9ced
2024-05-07 15:38:28 +01:00
