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Author SHA1 Message Date
Dhruvin Gandhi
feee342b66
gnu: Add go-github-com-lunixbochs-vtclean. 
* gnu/packages/golang.scm (go-github-com-lunixbochs-vtclean): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-10-08 00:10:30 -04:00
Dhruvin Gandhi
f0902bd2c0
gnu: Add go-git-sr-ht-emersion-gqlclient. 
* gnu/packages/golang.scm (go-git-sr-ht-emersion-gqlclient): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-10-08 00:10:30 -04:00
Dhruvin Gandhi
ddc59a63b7
gnu: Add go-git-sr-ht-emersion-go-scfg. 
* gnu/packages/golang.scm (go-git-sr-ht-emersion-go-scfg): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-10-08 00:10:30 -04:00
Dhruvin Gandhi
4a47fcbdb4
gnu: Add go-github-com-google-shlex. 
* gnu/packages/golang.scm (go-github-com-google-shlex): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-10-08 00:10:29 -04:00
Leo Famulari
dbdba682ed
gnu: linux-libre 5.4: Update to 5.4.217. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.217.
(linux-libre-5.4-pristine-source): Update hash.
 2022-10-07 22:17:56 -04:00
Ricardo Wurmus
5463bdded1
gnu: Add font-arphic-ukai. 
* gnu/packages/fonts.scm (font-arphic-ukai): New variable.
 2022-10-08 01:22:28 +02:00
Ricardo Wurmus
2da9ceaeb9
gnu: Add font-google-noto-serif-cjk. 
* gnu/packages/fonts.scm (font-google-noto-serif-cjk): New variable.
 2022-10-08 01:22:28 +02:00
Ricardo Wurmus
91334d36a4
gnu: Add font-google-noto-sans-cjk. 
* gnu/packages/fonts.scm (font-google-noto-sans-cjk): New variable.
 2022-10-08 01:22:28 +02:00
Ricardo Wurmus
c78a1d250f
gnu: Add texlive-zhspacing. 
* gnu/packages/tex.scm (texlive-zhspacing): New variable.
 2022-10-08 01:22:23 +02:00
Nicolas Goaziou
00ef6c18d5
gnu: giac: Fix build. 
* gnu/packages/algebra.scm (giac)[source]<origin>: Add a patch to fix build
issue with Pari-GP 2.15.
[arguments]<#:phase>: Skip another test.
* gnu/packages/patches/giac-pari-gp-anyarg.patch: New file.
* gnu/local.mk: Register it.

This fixes <https://issues.guix.gnu.org/58274>.
 2022-10-07 21:54:50 +02:00
Maxim Cournoyer
0169aee33e
tests: xvnc: Do not use specification->package in OS definition. 
Doing so would cause the extra package dependencies to not be
correctly registered as dependencies, which would lead to a silent
failure when attempting to load or byte compile the module at the time
guix build itself (e.g., when running 'guix pull').

* gnu/tests/vnc.scm (%xvnc-os) [packages]: Turn the the
specification->package declaration into a list of package objects.
 2022-10-07 15:08:05 -04:00
Maxim Cournoyer
00e8430500
Revert "Revert "services: Add xvnc-service-type."" 
This reverts commit 0c49661600.  The fix appears
in the subsequent commit, for clarity.
 2022-10-07 15:07:48 -04:00
Maxim Cournoyer
0c49661600
Revert "services: Add xvnc-service-type." 
This reverts commit 1c528a95cb.  This broke
'guix pull', for (yet) unknown reasons.
 2022-10-07 12:53:22 -04:00
Maxim Cournoyer
1c528a95cb
services: Add xvnc-service-type. 
* gnu/services/vnc.scm: New file.
* gnu/tests/vnc.scm: Likewise.
* gnu/local.mk: Register them.
 2022-10-07 10:11:13 -04:00
Maxim Cournoyer
aad4e4fc6b
services: xorg: Add auto-suspend? field to <gdm-configuration>. 
* gnu/services/xorg.scm (<gdm-configuration>)
<auto-suspend?>: New field.
(gdm-dconf-profiles): New variable.
* gnu/services/xorg.scm (gdm-shepherd-service)
<environment-variables> [!auto-suspend?]: Specify DCONF_PROFILE.
(gdm-service-type): Extend DCONF-SERVICE-TYPE.
* doc/guix.texi (X Window): Document the new field.
 2022-10-07 10:11:13 -04:00
Maxim Cournoyer
7b896a26b8
services: Add dconf-service-type. 
This allows the dconf profile directive "system-db:" to look up profiles by
name from under /etc/dconf/db/.

* gnu/services/xorg.scm (dconf-keyfile, dconf-profile): New procedures.
(dconf-profiles?): New predicate.
(dconf-configuration): New procedure.
(dconf-profile->profile-file): Likewise.
(dconf-profile->db-keyfile): Likewise.
(dconf-profile->db-keyfile-dir): Likewise.
(dconf-profile->db): Likewise.
(dconf-profile->files): Likewise.
(dconf-service-type): New service type.
 2022-10-07 10:11:12 -04:00
Maxim Cournoyer
0503b104d6
gnu: dconf: Set sysconfdir to /etc. 
* gnu/packages/gnome.scm (dconf) [arguments]: Use gexps.
[configure-flags]: Add --sysconfdir=/etc.
[native-inputs]: Remove labels.
 2022-10-07 10:11:12 -04:00
Maxim Cournoyer
133901a396
marionette: Add a callback arguments to wait-for-screen-text. 
* gnu/build/marionette.scm (wait-for-screen-text): New 'pre-action' and
'post-action' arguments.  Update doc.  Call the procedures before and after
the OCR occurs, respectively.
 2022-10-07 10:11:12 -04:00
Maxim Cournoyer
f24e0fc233
marionette: Define keystrokes for typing colons and exclamation marks. 
* gnu/build/marionette.scm (%qwerty-us-keystrokes): Register keystrokes for
the ':' and '!' characters.
 2022-10-07 10:11:12 -04:00
Maxim Cournoyer
4cce84b247
marionette: Preserve screen dumps on failures. 
This is to make it easier to debug test failures involving
'wait-for-screen-text': the screendump image used for the OCR is now preserved
for inspection when 'wait-for-screen-text' fails.

* gnu/build/marionette.scm (marionette-screen-text): Return the screendump
image file as the second value.  Adjust doc.
(wait-for-screen-text): Add the preserved screendump image file name to the
error message.  Adjust doc.
 2022-10-07 10:11:12 -04:00
Maxim Cournoyer
21f641e9fa
marionette: Make marionette-screen-text private. 
It has only one user, which is better suited for wait-for-screen-text anyway.

* gnu/tests/base.scm (run-basic-test): Refactor to use wait-for-screen-text
instead of marionette-screen-text.
 2022-10-07 10:11:11 -04:00
Maxim Cournoyer
1936668f5b
services: gdm: Add a configuration field to enable XDMCP. 
* gnu/services/xorg.scm (<gdm-configuration>)[xdmcp?]: New field.
* gnu/services/xorg.scm (gdm-configuration-file): Use it.  Use (ice-9 format)
to serialize boolean.
(gdm-polkit-rules): New variable.
(gdm-service-type): Use it to extend polkit.
* doc/guix.texi (X Window): Document it.
 2022-10-07 10:11:11 -04:00
Maxim Cournoyer
f3e9b069b1
gnu: gdm: Patch an extra reference to the Xsession script. 
Without this change, attempting to start a remote session over VNC would fail
with:

    Sep 19 19:54:04 localhost gdm-session-worker: Gdm: GdmSessionWorker: child
    '/gnu/store/yy9wq647l37658vgi291a287ll9iw6dc-gdm-42.0/etc/gdm/Xsession' could
    not be started: No such file or directory

* gnu/packages/gnome.scm (gdm)[phases]{patch-paths}
<daemon/gdm-session.c>: Patch a reference in so the Xsession script is
correctly found via the GDM_X_SESSION environment variable.
 2022-10-07 10:11:11 -04:00
Maxim Cournoyer
447c20db7e
gnu: tigervnc-server: Patch and wrap vncserver script. 
* gnu/packages/vnc.scm (tigervnc-server):
[phases]{patch-paths, wrap-vncserver}: New phases.
[inputs]: Add font-alias, guile-3.0, util-linux and xinit.
 2022-10-07 10:11:11 -04:00
Maxim Cournoyer
ff33b8698a
gnu: tigervnc-server: Disable tests via #:tests?. 
* gnu/packages/vnc.scm (tigervnc-server)
[tests?]: Set to #f.
[phases]: Restore check phase.
 2022-10-07 10:11:11 -04:00
Maxim Cournoyer
a7bfc9d68f
gnu: tigervnc-server: Adjust PAM config. 
* gnu/packages/vnc.scm (tigervnc-server)
[phases]{adjust-pam-config}: New phase.
 2022-10-07 10:11:10 -04:00
Maxim Cournoyer
0debec9f2d
gnu: tigervnc-server: Move source production into origin snippet. 
This will make it possible to patch command references in source files, and
also makes it more transparent as to what sources get used.

* gnu/packages/vnc.scm (tigervnc-server): Re-flow comment.
[source]: Inherit from xorg-server.  Add a snippet.  Use a patch to apply the
xserver patch.  Fix file name.
[phases]{copy-tvnc-xserver, patch-xserver}: Delete phases.
{build-tigervnc, install-tigervnc-aux}: Adjust accordingly.
 2022-10-07 10:11:10 -04:00
Maxim Cournoyer
c93b249dc0
gnu: tigervnc-server: Use new style inputs, gexps. 
* gnu/packages/vnc.scm (%tigervnc-client-source): New variable.
(tigervnc-server): Move input fields after arguments.
[native-inputs]: Use new style and 'modify-inputs'.  Do not add
tigervnc-client regular inputs.
[configure-flags]: Use gexps, cons* instead of append.
[phases]: Use gexps.
{check}: Replace smiley with an explanatory comment.
{copy-tvnc-xserver}: Adjust default Makefile variables, which simplifies
needed bindings in other phases.
{build-tigervnc, build, install-tigervnc-aux, install}: Remove let*-bound
variables.
{build-tigervnc, build}: Honor PARALLEL-BUILD?.
 2022-10-07 10:11:10 -04:00
Ludovic Courtès
06deab3321
gnu: libnma: Depend on GTK 4.x only on supported platforms. 
Partly fixes <https://issues.guix.gnu.org/58352>.

* gnu/packages/gnome.scm (libnma)[arguments]: Set "-Dlibnma_gtk4=false"
when (supported-package? gtk) returns #f.
[inputs]: Adjust accordingly.
 2022-10-07 16:01:39 +02:00
Ludovic Courtès
a52f39ad0c
gnu: rest@0.9.1: Remove dependency on gtksourceview and libadwaita. 
Partly fixes <https://issues.guix.gnu.org/58352>.

This also reduces the closure size of rest@0.9.1 from 2.1GiB to
498MiB (on x86_64-linux).

* gnu/packages/gnome.scm (rest-next)[arguments]: Pass the
"-Dexamples=false" config flag.
* gnu/packages/gnome.scm (rest-next)[inputs]: Remove GTKSOURCEVIEW and
LIBADWAITA.
 2022-10-07 16:01:39 +02:00
Nicolas Goaziou
8319be779f
gnu: extractpdfmark: Improve package style. 
* gnu/packages/pdf.scm (extractpdfmark)[arguments]: Use G-expressions.  Fix
phase name.
[native-inputs]: Remove labels.
 2022-10-07 00:53:32 +02:00
Nicolas Goaziou
eea2d5b6f7
gnu: extractpdfmark: Update to 1.1.1. 
* gnu/packages/pdf.scm (extractpdfmark): Update to 1.1.1.
 2022-10-07 00:53:31 +02:00
Nicolas Goaziou
63cece5787
gnu: emacs-lcr: Update to 1.2. 
* gnu/packages/emacs-xyz.scm (emacs-lcr): Update to 1.2.
 2022-10-07 00:53:31 +02:00
Nicolas Goaziou
c558fed4db
gnu: emacs-org-re-reveal: Update to 3.16.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.16.0.
 2022-10-07 00:53:31 +02:00
Nicolas Goaziou
23c97e2e88
gnu: emacs-ement: Update to 0.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.3.1.
 2022-10-07 00:53:30 +02:00
Nicolas Goaziou
22498be0a1
gnu: emacs-emms: Update to 12. 
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 12.
 2022-10-07 00:53:30 +02:00
Nicolas Goaziou
9cd3c2dc18
gnu: emacs-debbugs: Update to 0.34. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.34.
 2022-10-07 00:53:30 +02:00
Timotej Lazar
cb731c80ff
gnu: julius: Update to 1.7.0. 
* gnu/packages/games.scm (julius): Update to 1.7.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-06 23:17:05 +02:00
Sergey Trofimov
37ed844711
gnu: squid: Enable TLS features. 
Despite openssl being listed as an input, it was not actually enabled by
default.  Fixing that using a configure flag.

* gnu/packages/networking.scm (squid)[arguments]: Add "--with-openssl"
to #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-06 23:17:05 +02:00
Felix Lechner
2a51fb1d29
gnu: nyacc: Update to 1.07.4. 
* gnu/packages/mes.scm (nyacc): Update to 1.07.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-06 23:17:05 +02:00
Timotej Lazar
3a5ae8c070
gnu: sssd: Update to 2.7.4. 
* gnu/packages/sssd.scm (sssd): Update to 2.7.4.
* gnu/packages/patches/sssd-optional-systemd.patch: Update patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-06 23:17:05 +02:00
Ludovic Courtès
a0c83aa04b
gnu: python-textual: Remove input labels. 
* gnu/packages/python-xyz.scm (python-textual)[arguments]: Define the
'tests' origin here.
[native-inputs]: Remove "tests" input and remove input labels.
 2022-10-06 23:17:04 +02:00
Brian Kubisiak
96cbfc6202
gnu: Add python-textual. 
* gnu/packages/python-xyz.scm (python-textual): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-06 23:17:04 +02:00
Liliana Marie Prikler
e4951f7c71
gnu: python-renpy: Update to 8.0.3. 
* gnu/packages/game-development.scm (python-renpy): Update to 8.0.3.
 2022-10-06 21:16:45 +02:00
Liliana Marie Prikler
b60b756226
gnu: python-pygame-sdl2: Update to 2.1.0-for-renpy-8.0.3. 
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0-for-renpy-8.0.3.
 2022-10-06 21:16:45 +02:00
Tanguy Le Carrour
3657b4daea
gnu: tessen: Update to 2.1.2. 
* gnu/packages/password-utils.scm (tessen): Update to 2.1.2.
[arguments]: Substitute notify-send, wl-copy and xdg-open.
[inputs] Add libnotify, wl-clipboard and xdg-utils.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-06 19:49:33 +03:00
itd
0179b21641
gnu: weechat-wee-slack: Update to 2.9.0. 
* gnu/packages/messaging.scm (weechat-wee-slack): Update to 2.9.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-06 19:35:01 +03:00
Brian Cully
ac3582f990
gnu: zfs: Update to 2.1.6. 
* gnu/packages/file-systems.scm (zfs): Update to 2.1.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-06 19:27:44 +03:00
Liliana Marie Prikler
2f88f5c06f
gnu: komikku: Update to 1.1.0. 
* gnu/packages/gnome.scm (komikku): Update to 1.1.0.
 2022-10-06 17:25:35 +02:00
Fredrik Salomonsson
53e086c5c6
gnu: Add waybar-cpu-histogram. 
* gnu/packages/wm.scm (waybar-cpu-histogram): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:03 +01:00
Lu Hui
eb5b104ca8
gnu: libdaemon: Fix targeting riscv64. 
* gnu/packages/libdaemon.scm (libdaemon)[native-inputs,arguments]: Treat
targeting riscv64 like aarch64 is handled.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:03 +01:00
Paul A. Patience
52b9f0ef1e
gnu: Add discregrid. 
* gnu/packages/graphics.scm (discregrid): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:03 +01:00
Wiktor Żelazny
e4593e2114
gnu: Add r-gldex. 
* gnu/packages/cran.scm (r-gldex): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:03 +01:00
Wiktor Żelazny
53eea4d657
gnu: Add r-spacefillr. 
* gnu/packages/cran.scm (r-spacefillr): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:03 +01:00
(
7a271e6886
gnu: Add cpass. 
* gnu/packages/password-utils.scm (cpass): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:03 +01:00
(
44f8aa26bc
gnu: Add wlgreet. 
* gnu/packages/admin.scm (wlgreet): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:03 +01:00
(
829c2eaa7f
gnu: Add rust-os-pipe-0.8. 
* gnu/packages/crates-io.scm (rust-os-pipe-0.8): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:02 +01:00
(
b370ac2103
gnu: Add rust-greetd-ipc-0.8. 
* gnu/packages/crates-io.scm (rust-greetd-ipc-0.8): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-10-06 15:08:02 +01:00
Christopher Baines
020dc0a1f1
gnu: plink: Change origin URL. 
pngu.mgh.harvard.edu seems to time out.

* gnu/packages/bioinformatics.scm (plink)[origin]. Change URL.
 2022-10-06 15:08:02 +01:00
Michael Rohleder
b86867417f
gnu: celluloid: Do not install icon cache. 
Fixes <https://issues.guix.gnu.org/58207>.

* gnu/packages/video.scm (celluloid)[arguments]: Add phase
disable-postinstall-script so postinstall-script does nothing. Build
with glib-or-gtk meson option.
[native-inputs]: Remove desktop-file-utils, gtk:bin.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-06 16:58:15 +03:00
Michael Rohleder
2408a10325
gnu: quaternion: Update to 0.0.95.1. 
* gnu/packages/messaging.scm (quaternion): Update to 0.0.95.1.
[inputs]: Add qtgraphicaleffects.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-06 16:26:17 +03:00
Michael Rohleder
dd7c8537d2
gnu: libqmatrixclient: Update to 0.6.11. 
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.6.11.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-06 16:26:11 +03:00
David Thompson
a503d0ba8c
gnu: gitolite: Switch to G-expressions. 
* gnu/packages/version-control.scm (gitolite)[arguments]: Use G-expressions.
[inputs]: Add grep and sed.
 2022-10-06 08:38:50 -04:00
Ricardo Wurmus
e069c6df5e
gnu: Add r-dada2. 
* gnu/packages/bioconductor.scm (r-dada2): New variable.
 2022-10-06 12:38:34 +02:00
Efraim Flashner
40a42c4348
gnu: linux-libre: Support zram on all kernels. 
* gnu/packages/linux.scm (%default-extra-linux-options): Add config
options to add zram support.
 2022-10-06 09:44:54 +03:00
Leo Famulari
e543bd8321
gnu: linux-libre 4.19: Update to 4.19.261. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.261.
(linux-libre-4.19-pristine-source): Update hash.
 2022-10-06 00:57:06 -04:00
Leo Famulari
1b7cb8a977
gnu: linux-libre 5.4: Update to 5.4.216. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.216.
(linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes.
 2022-10-06 00:57:06 -04:00
Leo Famulari
93852b83ec
gnu: linux-libre 5.10: Update to 5.10.147. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.147.
(linux-libre-5.10-pristine-source): Update hash.
 2022-10-06 00:57:06 -04:00
Leo Famulari
a175ef12b6
gnu: linux-libre 5.15: Update to 5.15.72. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.72.
(linux-libre-5.15-pristine-source): Update hash.
 2022-10-06 00:57:05 -04:00
Leo Famulari
d912c36330
gnu: linux-libre 5.19: Update to 5.19.14. 
* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.14.
(linux-libre-5.19-pristine-source): Update hash.
 2022-10-06 00:57:02 -04:00
Sharlatan Hellseher
43b8df4bec
gnu: Add splash. 
* gnu/packages/astronomy.scm (splash): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-06 00:11:18 +02:00
Alexey Abramov
40ad967322
services: dhcp-client: Implement and use a configuration record. 
* gnu/services/networking.scm (dhcp-client-configuration): New record
configuration.
(dhcp-client-shepherd-service): Implement a shepher service. Provide a
deprication message for legacy configurations.
(dhcp-client-service-type): Use dhcp-client-shepherd-service.
* doc/guix.texi (Networking Setup): Update.
* po/guix/POTFILES.in: Add 'gnu/services/networking.scm'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-06 00:11:18 +02:00
Liliana Marie Prikler
9be5f88e18
gnu: gnome-maps: Properly wrap GI_TYPELIB_PATH. 
This fixes a bug reported by pkill9 and tschilptschilp23 in IRC.
See <http://logs.guix.gnu.org/guix/2022-10-01.log#031053> and
<http://logs.guix.gnu.org/guix/2022-10-05.log#214334>.
It does so by using a snippet that's also applied in gnome-shell.

* gnu/packages/geo.scm (gnome-maps)[#:phases]: Remove ‘patch-dbus-service’.
Update ‘wrap’ so that it uses GJS-specific wrapping code rather than
wrap-program.
 2022-10-05 22:05:43 +02:00
Liliana Marie Prikler
ccbeb3fde6
gnu: gnome-maps: Delete trailing space. 
* gnu/packages/geo.scm (gnome-maps)[inputs]: Delete trailing spaces.
 2022-10-05 21:45:18 +02:00
Liliana Marie Prikler
7ddba7bf66
gnu: gnome-maps: Update to 43.0. 
* gnu/packages/geo.scm (gnome-maps): Update to 43.0.
[arguments]<#:meson>: Use meson-0.63.
<#:phases>: Replace ‘skip-gtk-update-icon-cache’ with
‘skip-cache-and-database-updates’.  Update accordingly.
 2022-10-05 21:44:00 +02:00
Ricardo Wurmus
fd6cd9de86
gnu: Add megahit. 
* gnu/packages/bioinformatics.scm (megahit): New variable.
 2022-10-05 17:59:04 +02:00
Ricardo Wurmus
be1d561f1a
gnu: Add cd-hit-auxtools. 
* gnu/packages/bioinformatics.scm (cd-hit-auxtools): New variable.
 2022-10-05 14:28:24 +02:00
Ricardo Wurmus
3f627bf56b
gnu: cd-hit: Update to 4.8.1. 
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.8.1.
[arguments]: Do not use quasiquote; remove trailing #T from build phases.
[inputs]: Add zlib.
 2022-10-05 13:47:57 +02:00
Ricardo Wurmus
9ed65e6af7
gnu: kaiju: Update to 1.9.0. 
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.9.0.
[arguments]: Use gexps; wrap scripts in install phase.
[inputs]: Add bzip2, coreutils, curl, gawk, guile-3.0, gzip,
python-wrapper, tar, and wget.
 2022-10-04 23:10:56 +02:00
Liliana Marie Prikler
a96ebe47b0
gnu: ibus: Build with GTK4. 
* gnu/packages/ibus.scm (ibus)[arguments]: Add “--enable-gtk4”.
[inputs]: Add gtk and pango-next.
 2022-10-04 20:40:46 +02:00
Liliana Marie Prikler
c264265abd
gnu: sdl2: Use ibus-minimal instead of ibus. 
This prevents an input cycle between GTK -> ffmpeg -> sdl2 -> ibus -> GTK.

* gnu/packages/sdl.scm (sdl2)[inputs]: Replace ibus with ibus-minimal.
 2022-10-04 20:40:46 +02:00
Liliana Marie Prikler
ef53c075a1
gnu: Add ibus-minimal. 
* gnu/packages/ibus.scm (ibus-minimal): New variable.
(ibus): Inherit from ibus-minimal.
 2022-10-04 20:40:45 +02:00
Jonathan Brielmaier
1c821a3a63
gnu: icedove: Update to 102.3.1 [security fixes]. 
Fixes CVE-2022-39236, CVE-2022-39249, CVE-2022-39250 and CVE-2022-39251.

* gnu/packages/gnuzilla.scm (icedove): Update to 102.3.1.
 2022-10-04 20:36:24 +02:00
Ludovic Courtès
ecee392ef1
gnu: eog-plugins: Fix source URL. 
The incorrect URL was introduced in
d6d861c615.

* gnu/packages/gnome.scm (eog-plugins)[source]: Change directory in URL.
 2022-10-04 18:15:36 +02:00
Zzull
58f6b246a6
gnu: Add awscli-2. 
* gnu/packages/python-web.scm (awscli-2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-04 18:15:36 +02:00
Zzull
d7932b731f
gnu: Add python-executor. 
* gnu/packages/python-xyz.scm (python-executor): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-04 18:15:36 +02:00
Zzull
0669bf64f7
gnu: Add python-property-manager. 
* gnu/packages/python-xyz.scm (python-property-manager): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-04 18:15:35 +02:00
Ludovic Courtès
f83622f17d
services: anonip: Bail out when the input is not a FIFO. 
* gnu/services/web.scm (anonip-shepherd-service)[start]: Accept zero
arguments.  Define 'spawn'.  Print a message and return #f when #$INPUT
does not denote a FIFO.
 2022-10-04 18:15:35 +02:00
Ludovic Courtès
ae1af5d787
gnu: guix: Update to 17134b9. 
* gnu/packages/package-management.scm (guix): Update to 17134b9.
 2022-10-04 18:15:35 +02:00
( via Guix-patches via
7030f592c6
home: Add home-batsignal-service-type. 
* gnu/home/services/pm.scm (home-batsignal-service-type): New variable.
(home-batsignal-configuration): New record type.
* doc/guix.texi: Document them.
* gnu/local.mk: Add gnu/home/services/pm.scm.
 2022-10-04 17:04:45 +04:00
Timotej Lazar
ba84c8c448
gnu: augustus: Update to 3.2.0. 
* gnu/packages/games.scm (augustus): Update to 3.2.0.
[inputs]: Add expat.
[snippet]: Unbundle it. Drop trailing #t.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:43 +02:00
jgart
31e19fd874
gnu: emacs-lsp-mode: Update to 26c4d3e. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 26c4d3e.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:43 +02:00
Michael Rohleder
7e9534150b
gnu: emacs-nov-el: Update to 0.4.0 and use gexps. 
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.4.0.
[arguments]: Use gexps.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:42 +02:00
Nicolas Goaziou
df5a021f66
gnu: emacs-modus-themes: Update to 2.7.1. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.7.1.
 2022-10-04 13:37:42 +02:00
Nicolas Goaziou
5e8221822e
gnu: emacs-org-mime: Update to 0.3.2. 
* gnu/packages/emacs-xyz.scm (emacs-org-mime): Update to 0.3.2.
 2022-10-04 13:37:42 +02:00
kiasoc5
fd7c34f2bf
gnu: Add emacs-circadian. 
* gnu/packages/emacs-xyz.scm (emacs-circadian): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:41 +02:00
Ricardo Wurmus
17134b9ec1
gnu: r-tximeta: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
94693d1980
gnu: r-bionero: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2.
[propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
202fd44ca0
gnu: r-biodb: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
87c097631f
gnu: r-biocdockermanager: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
 2022-10-03 19:08:09 +02:00