Roel Janssen
6a7de43a58
gnu: r-topgo: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.42.0.
2020-12-09 12:12:40 +01:00
Roel Janssen
26e2184fc1
gnu: r-genomicfeatures: Update to 1.42.1.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.1.
2020-12-09 12:12:40 +01:00
zimoun
92377e7fea
gnu: r-rtracklayer: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.50.0.
2020-12-09 12:12:39 +01:00
zimoun
077e813657
gnu: r-genomicalignments: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.26.0.
2020-12-09 12:12:39 +01:00
zimoun
3ca5b05474
gnu: r-variantannotation: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.36.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:39 +01:00
zimoun
8607a5394b
gnu: r-summarizedexperiment: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.20.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:39 +01:00
zimoun
9168ab0911
gnu: r-rsamtools: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.6.0.
2020-12-09 12:12:39 +01:00
zimoun
5d60273b77
gnu: r-biostrings: Update to 2.58.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.58.0.
2020-12-09 12:12:39 +01:00
Roel Janssen
444b101dc2
gnu: r-biocparallel: Update to 1.24.1.
...
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.24.1.
2020-12-09 12:12:39 +01:00
zimoun
4fac3fe67d
gnu: r-biomart: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.0.
2020-12-09 12:12:39 +01:00
zimoun
f517365cef
gnu: r-annotationdbi: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.52.0.
2020-12-09 12:12:39 +01:00
zimoun
9103041d13
gnu: r-biobase: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.50.0.
2020-12-09 12:12:38 +01:00
zimoun
7641dba3e6
gnu: r-genomicranges: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.42.0.
2020-12-09 12:12:38 +01:00
zimoun
d972ab690e
gnu: r-limma: Update to 3.46.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.46.0.
2020-12-09 12:12:38 +01:00
zimoun
5996929b36
gnu: r-edger: Update to 3.32.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.0.
2020-12-09 12:12:38 +01:00
zimoun
cde7fcedf9
gnu: r-genomeinfodb: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.0.
2020-12-09 12:12:38 +01:00
zimoun
2ae3b7db24
gnu: r-bioccheck: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.26.0.
2020-12-09 12:12:38 +01:00
zimoun
1160c83caf
gnu: r-biocstyle: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.0.
2020-12-09 12:12:38 +01:00
zimoun
182a080127
gnu: r-biocviews: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.0.
2020-12-09 12:12:38 +01:00
zimoun
16a4822a07
gnu: r-grohmm: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.24.0.
2020-12-09 12:12:37 +01:00
Roel Janssen
5598f53497
gnu: r-systempiper: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.2.
[propagated-inputs]: Add r-iranges.
2020-12-09 12:12:37 +01:00
zimoun
a05bb428e4
gnu: r-shortread: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.
2020-12-09 12:12:37 +01:00
zimoun
74204b48eb
gnu: r-gostats: Update to 2.56.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.56.0.
2020-12-09 12:12:37 +01:00
zimoun
afbc8e1433
gnu: r-category: Update to 2.56.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.56.0.
2020-12-09 12:12:37 +01:00
zimoun
03312f052a
gnu: r-gseabase: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.0.
2020-12-09 12:12:37 +01:00
zimoun
7a57b229b6
gnu: r-rbgl: Update to 1.66.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.66.0.
2020-12-09 12:12:37 +01:00
zimoun
4451918e3a
gnu: r-annotationforge: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.32.0.
2020-12-09 12:12:37 +01:00
zimoun
a323c1e9b4
gnu: r-dexseq: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.36.0.
2020-12-09 12:12:37 +01:00
zimoun
936227f144
gnu: r-deseq2: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.30.0.
2020-12-09 12:12:37 +01:00
zimoun
64cf667e98
gnu: r-genefilter: Update to 1.72.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.0.
2020-12-09 12:12:36 +01:00
Roel Janssen
fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1.
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* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
2020-12-09 12:12:36 +01:00
zimoun
0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link.
...
* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
zimoun
2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
zimoun
ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
zimoun
26cf5eb568
gnu: r-hdf5array: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-hdf5array): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
zimoun
b58c4e7613
gnu: r-cytolib: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
Roel Janssen
c5ae5c1c40
gnu: r-rhdf5lib: Fix build.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Fix build.
2020-12-09 12:12:36 +01:00
zimoun
79cb6af375
gnu: r-rhdf5lib: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.0.
2020-12-09 12:12:36 +01:00
zimoun
5992c25e7f
gnu: r-hdf5array: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.0.
2020-12-09 12:12:36 +01:00
zimoun
fafa94b065
gnu: r-delayedarray: Update to 0.16.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.0.
[propagated-inputs]: Add r-matrixgenerics; remove r-matrixstats.
2020-12-09 12:12:36 +01:00
Roel Janssen
c8da013780
gnu: Add r-matrixgenerics.
...
* gnu/packages/bioconductor.scm (r-matrixgenerics): New variable.
2020-12-09 12:12:36 +01:00
Roel Janssen
47f6fd802e
gnu: Add r-ggalluvial.
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* gnu/packages/cran.scm (r-ggalluvial): New variable.
2020-12-09 12:12:35 +01:00
zimoun
cf6033ee6e
gnu: r-iranges: Update to 2.24.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.0.
2020-12-09 12:12:35 +01:00
zimoun
57820475db
gnu: r-s4vectors: Update to 0.28.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.0.
2020-12-09 12:12:35 +01:00
zimoun
ed44a72acf
gnu: r-hitc: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.34.0.
2020-12-09 12:12:35 +01:00
zimoun
7105658e9c
gnu: r-fithic: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.16.0.
2020-12-09 12:12:35 +01:00
zimoun
724b770678
gnu: r-xvector: Update to 0.30.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.30.0.
2020-12-09 12:12:35 +01:00
zimoun
b6348b0edf
gnu: r-rgraphviz: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.34.0.
2020-12-09 12:12:35 +01:00
zimoun
8fa30df02a
gnu: r-preprocesscore: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.0.
2020-12-09 12:12:35 +01:00
zimoun
e5b2c80dc2
gnu: r-fourcseq: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-fourcseq): Update to 1.24.0.
2020-12-09 12:12:35 +01:00
zimoun
3cacc3bdce
gnu: r-icens: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-icens): Update to 1.62.0.
2020-12-09 12:12:35 +01:00
zimoun
126846a0da
gnu: r-m3c: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.12.0.
2020-12-09 12:12:35 +01:00
zimoun
7a242042ae
gnu: r-rgreat: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.22.0.
2020-12-09 12:12:35 +01:00
zimoun
15be98c136
gnu: r-biodist: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.62.0.
2020-12-09 12:12:34 +01:00
zimoun
7891c83c3e
gnu: r-biocworkflowtools: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
zimoun
feb0cbf402
gnu: r-biocset: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-biocset): Update to 1.4.0.
[propagated-inputs]: Add r-s4vectors; remove r-rtracklayer.
2020-12-09 12:12:34 +01:00
zimoun
ff4834c065
gnu: Add r-biocio.
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* gnu/packages/bioconductor.scm (r-biocio): New variable.
2020-12-09 12:12:34 +01:00
zimoun
6a5d8cadee
gnu: r-biocpkgtools: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.0.
2020-12-09 12:12:34 +01:00
zimoun
072f722f8e
gnu: r-biocor: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.14.0.
2020-12-09 12:12:34 +01:00
zimoun
e29b15ee97
gnu: r-bioconcotk: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.10.0.
2020-12-09 12:12:34 +01:00
zimoun
13d0b780c1
gnu: r-multiassayexperiment: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
zimoun
49a728581f
gnu: r-experimenthub: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
zimoun
abc18fc596
gnu: r-biocgraph: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
zimoun
7dced9ad01
gnu: r-bioccasestudies: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
zimoun
b0f3bfe4ae
gnu: r-ebarrays: Update to 2.54.0.
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* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.54.0.
2020-12-09 12:12:34 +01:00
zimoun
a4f4a55283
gnu: r-reactomepa: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.
2020-12-09 12:12:34 +01:00
zimoun
26224e09ae
gnu: r-graphite: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.
2020-12-09 12:12:34 +01:00
zimoun
95e30d8f6e
gnu: r-biobroom: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.
2020-12-09 12:12:33 +01:00
zimoun
2f36b0406e
gnu: r-bioassayr: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.
2020-12-09 12:12:33 +01:00
zimoun
95ef268142
gnu: r-chemminer: Update to 3.42.0.
...
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.
2020-12-09 12:12:33 +01:00
zimoun
1e28867803
gnu: r-bigpint: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.
2020-12-09 12:12:33 +01:00
zimoun
e80f8262f6
gnu: r-bigmemoryextras: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.
2020-12-09 12:12:33 +01:00
zimoun
0f94a9edb0
gnu: r-biggr: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.
2020-12-09 12:12:33 +01:00
zimoun
249b703056
gnu: r-hyperdraw: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
zimoun
294fd58a42
gnu: r-hypergraph: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.62.0.
2020-12-09 12:12:33 +01:00
zimoun
3320f044a3
gnu: r-rsbml: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.48.0.
2020-12-09 12:12:33 +01:00
zimoun
d57be63323
gnu: r-bifet: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.10.0.
2020-12-09 12:12:33 +01:00
zimoun
4ec665693d
gnu: r-bicare: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-bicare): Update to 1.48.0.
2020-12-09 12:12:33 +01:00
zimoun
2219bef12f
gnu: r-bhc: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
zimoun
3cebe2745a
gnu: r-bgx: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-bgx): Update to 1.56.0.
2020-12-09 12:12:33 +01:00
zimoun
fad5da32dc
gnu: r-bgmix: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.50.0.
2020-12-09 12:12:32 +01:00
zimoun
fa7e242910
gnu: r-unifiedwmwqpcr: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
zimoun
949626f209
gnu: r-htqpcr: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.44.0.
2020-12-09 12:12:32 +01:00
zimoun
44ecd5f77f
gnu: r-variancepartition: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.20.0.
2020-12-09 12:12:32 +01:00
zimoun
45ea773f94
gnu: r-variantfiltering: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
zimoun
87f704b43c
gnu: r-timeseriesexperiment: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.8.0.
2020-12-09 12:12:32 +01:00
zimoun
fd7e23b551
gnu: r-wavcluster: Update to 2.24.0.
...
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.24.0.
2020-12-09 12:12:32 +01:00
zimoun
0c53f27dd6
gnu: r-reqon: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.36.0.
2020-12-09 12:12:32 +01:00
zimoun
42e00c0923
gnu: r-seqbias: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.38.0.
2020-12-09 12:12:32 +01:00
zimoun
a50779b8a3
gnu: r-gdsfmt: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
zimoun
e7b61ba7f6
gnu: r-roc: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-roc): Update to 1.66.0.
2020-12-09 12:12:31 +01:00
zimoun
5d1bd61137
gnu: r-genie3: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.12.0.
2020-12-09 12:12:31 +01:00
zimoun
7954fe16a0
gnu: r-cicero: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.0.
2020-12-09 12:12:31 +01:00
zimoun
6481357330
gnu: r-rcistarget: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.10.0.
2020-12-09 12:12:31 +01:00
zimoun
fafaeab48b
gnu: r-depecher: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-depecher): Update to 1.6.0.
2020-12-09 12:12:31 +01:00
zimoun
0e78ce36f0
gnu: r-mixomics: Update to 6.14.0.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.0.
2020-12-09 12:12:31 +01:00
zimoun
1f7ddaf0fb
gnu: r-flowsom: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.22.0.
2020-12-09 12:12:31 +01:00
zimoun
63033b159a
gnu: r-cytoml: Update to 2.2.1.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.1.
2020-12-09 12:12:31 +01:00
zimoun
5abf0a0dd2
gnu: r-opencyto: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
zimoun
fd11c7b80f
gnu: r-flowstats: Update to 4.2.0.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.2.0.
2020-12-09 12:12:30 +01:00
