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Author SHA1 Message Date
Ricardo Wurmus
c6136b48c2
gnu: Add python-torchfile. 
* gnu/packages/machine-learning.scm (python-torchfile): New variable.
 2022-07-08 18:41:35 +02:00
Leo Famulari
788ba04f38
gnu: FFmpeg 3: Update to 3.4.11. 
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.11.
 2022-07-08 12:15:30 -04:00
Leo Famulari
df7acf25bc
gnu: FFmpeg 2: Update to 2.8.20. 
* gnu/packages/video.scm (ffmpeg-2.8): Update to 2.8.20.
 2022-07-08 12:15:29 -04:00
Leo Famulari
f081342e10
gnu: linux-libre 4.9: Update to 4.9.322. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.322.
(linux-libre-4.9-pristine-source): Update hash.
 2022-07-08 11:50:37 -04:00
Leo Famulari
564b60796e
gnu: linux-libre 4.14: Update to 4.14.287. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.287.
(linux-libre-4.14-pristine-source): Update hash.
 2022-07-08 11:50:37 -04:00
Leo Famulari
942627ab14
gnu: linux-libre 4.19: Update to 4.19.251. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.251.
(linux-libre-4.19-pristine-source): Update hash.
 2022-07-08 11:50:36 -04:00
Leo Famulari
010c233095
gnu: linux-libre 5.4: Update to 5.4.204. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.204.
(linux-libre-5.4-pristine-source): Update hash.
 2022-07-08 11:50:36 -04:00
Leo Famulari
f18e4e268b
gnu: linux-libre 5.10: Update to 5.10.129. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.129.
(linux-libre-5.10-pristine-source): Update hash.
 2022-07-08 11:50:36 -04:00
Leo Famulari
8dc0de8adb
gnu: linux-libre 5.15: Update to 5.15.53. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.53.
(linux-libre-5.15-pristine-source): Update hash.
 2022-07-08 11:50:35 -04:00
Leo Famulari
e554c67e0e
gnu: linux-libre 5.18: Update to 5.18.10. 
* gnu/packages/linux.scm (linux-libre-5.18-version): Update to 5.18.10.
(linux-libre-5.18-pristine-source): Update hash.
 2022-07-08 11:50:28 -04:00
Paul A. Patience
e07fa9b040
gnu: Add cppawk and cppawk-egawk. 
* gnu/packages/gawk.scm (cppawk, cppawk-egawk): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-08 17:36:51 +02:00
Paul A. Patience
1fed71ce19
gnu: Add egawk-next. 
* gnu/packages/gawk.scm (egawk-next): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-08 17:36:38 +02:00
Paul A. Patience
2e5c519b3f
gnu: Add gawk-mpfr. 
* gnu/packages/gawk.scm (gawk-mpfr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-08 17:36:27 +02:00
Paul A. Patience
f5efde47f7
gnu: Use 'license:' prefix in (gnu packages gawk). 
* gnu/packages/gawk.scm: Import (guix licenses) with 'license:' prefix.
(gawk, mawk)[license]: Prefix with 'license:'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-08 17:36:23 +02:00
Ale Abdo
b4e74f875f
gnu: python-graph-tool: Update to 2.45. 
* gnu/packages/graph.scm (python-graph-tool): Update to 2.45.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-08 17:32:15 +02:00
Ludovic Courtès
3759b71dc8
gnu: curl@7.84.0: Reduce lib3026 resource use on 32-bit platforms. 
This is a followup to c145e51844.

See discussion at
<https://lists.gnu.org/archive/html/guix-devel/2022-07/msg00011.html>.

* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Remove
'skip-failing-tests' and add 'tweak-lib3026-test'.
 2022-07-08 17:28:50 +02:00
Felix Gruber
6f909b37fa
gnu: gdal: Use cmake-build-system. 
Gdal declared its configure script as deprecated with the release of
version 3.5 and is planning to deprecate it with release 3.6 which is
scheduled for November 2022.

* gnu/packages/geo.scm (gdal)[build-system]: Use cmake-build-system.
  [arguments]: Remove configure flags for library search paths;
  they are found automatically by cmake now. Add
  -DGDAL_USE_INTERNAL_LIBS=WHEN_NO_EXTERNAL and
  -DGDAL_USE_JPEG12_INTERNAL=OFF to get approximately the same results
  as with the old configure script.
  [inputs]: Remove pcre. Add pcre2 and qhull.
 2022-07-08 17:11:23 +02:00
jgart
15943fa757
gnu: python-debug: Improve synopsis. 
* gnu/packages/python.scm (python-debug) [synopsis]: Update.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-07-08 09:33:12 -04:00
Timotej Lazar
a9fd061212
gnu: sssd: Update to 2.7.3. 
* gnu/packages/sssd.scm (sssd): Update to 2.7.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-08 13:52:13 +01:00
Arun Isaac
37dd7e53b9
gnu: Add omega. 
* gnu/packages/search.scm (omega): New variable.
* gnu/packages/search.scm (xapian): Add note to update omega when updating
xapian.
 2022-07-08 11:32:46 +05:30
Simon South
7dfb8dc4c1
gnu: vlc: Add bash-minimal as an input. 
* gnu/packages/video.scm (vlc)[inputs]: Add bash-minimal, silencing a warning
from "guix lint vlc" as "wrap-program" is used in the package definition.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-08 00:16:15 +01:00
Simon South
f53e14be33
gnu: vlc: Remove input labels. 
* gnu/packages/video.scm (vlc)[native-inputs]: Remove input labels.
[inputs]: Remove input labels and re-sort.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-08 00:16:14 +01:00
Simon South
07986d0fad
gnu: Remove srt-1.4.1. 
* gnu/packages/networking.scm (srt-1.4.1): Delete variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-08 00:16:14 +01:00
Simon South
6b9d373083
gnu: vlc: Use regular srt. 
* gnu/packages/video.scm (vlc)[inputs]: Use regular srt package, supported
since upstream commit 9a28929.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-08 00:16:14 +01:00
Simon South
5feeb51f1b
gnu: srt: Update to 1.4.4. 
* gnu/packages/networking.scm (srt): Update to 1.4.4.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-08 00:16:13 +01:00
Simon South
70f3914c24
gnu: srt: Remove input labels. 
* gnu/packages/networking.scm (srt)[native-inputs]: Remove input labels.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-08 00:16:13 +01:00
Christopher Baines
a4c6997acb
gnu: guix-build-coordinator: Update to 0-58.a7bbf9d. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-58.a7bbf9d.
 2022-07-08 00:15:50 +01:00
Simon South
8cc2061bc0
gnu: mame: Update to 0.245. 
* gnu/packages/emulators.scm (mame): Update to 0.245.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-07 23:24:58 +01:00
Christopher Baines
45ed812da5
gnu: guix-build-coordinator: Update to 0-57.3175ac2. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-57.3175ac2.
 2022-07-07 22:16:12 +01:00
jgart
7fcf6f454e
gnu: cl-gopher: Update to 0899e7f. 
* gnu/packages/lisp-xyz.scm (cl-gopher): Update to 0899e7f.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-07 22:16:12 +01:00
jgart
0d2ac2bdd4
gnu: cl-http-body: Update to 3e4bedd. 
* gnu/packages/lisp-xyz.scm (cl-http-body): Update to 3e4bedd.
[inputs]: Add missing dependencies.
[native-inputs]: Add missing dependencies.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-07 22:16:12 +01:00
jgart
89161d4919
gnu: perl-scalar-list-utils: Update to 1.62. 
* gnu/packages/perl.scm (perl-scalar-list-utils): Update to 1.62.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-07 22:16:11 +01:00
Felix Gruber
ca291e4f73
gnu: mia: Build against VTK 9. 
* gnu/packages/image-processing.scm (mia): Build against VTK 9.
[inputs]: Remove vtk-7; add vtk.
[source]: Add mia-vtk9.patch.
* gnu/packages/patches/mia-vtk9.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-07 22:16:11 +01:00
Felix Gruber
6cc559b47d
gnu: sameboy: Update to 0.15. 
* gnu/packages/emulators.scm (sameboy): Update to 0.15.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-07 22:16:11 +01:00
jgart
08efb331d0
gnu: Add python-pydantic-cli. 
* gnu/packages/python-xyz.scm (python-pydantic-cli): New variable.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-07-07 17:10:07 -04:00
jgart
ad4cd4f073
gnu: emacs-psc-ide: Update to ce97d71. 
* gnu/packages/emacs-xyz.scm (emacs-psc-ide): Update to ce97d71.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-07-07 16:23:56 -04:00
(unmatched-parenthesis
96eb2337b5
gnu: Add cproc. 
* gnu/packages/c.scm (cproc): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-07-07 16:12:11 -04:00
jgart
5299628b90
gnu: Add sbase. 
* gnu/packages/suckless.scm (sbase): New variable.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-07-07 15:54:17 -04:00
John Kehayias
42224e36d1
gnu: darktable: Update to 4.0.0. 
* gnu/packages/photo.scm (darktable): Update to 4.0.0.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2022-07-07 19:54:09 +02:00
Maxim Cournoyer
fa4a9016be
gnu: pitivi: Update to 2022.06.0. 
* gnu/packages/patches/pitivi-fix-build-with-meson-0.60.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/video.scm (pitivi): Update to 2022.06.0.
[version]: Do not prefix with previous semver version.
[inputs]{gst-plugins/selection}: Add comment about cvtracker.
{python-librosa}: New input.
 2022-07-07 12:19:13 -04:00
Maxim Cournoyer
47f0b3ad14
gnu: pitivi: Propagate librsvg. 
Fixes <https://issues.guix.gnu.org/56288>.

* gnu/packages/video.scm (pitivi)[native-inputs]: Use new style, relocate
before inputs.
[inputs]: Add bash-minimal, for wrap-program.  Move librsvg to...
[propagated-inputs]: ... this new field.
[phases]{wrap-other-dependencies}: Use search-input-file to find output
binary.

Reported-by: Christian Miller <miller.christian@proton.me>
 2022-07-07 11:51:58 -04:00
Ricardo Wurmus
ba86c7604d
gnu: python-torchvision: Update to 0.13.0. 
* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.13.0.
 2022-07-07 14:02:33 +02:00
Ricardo Wurmus
deae5d0df1
gnu: python-pytorch: Update to 1.12.0. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.12.0.
[arguments]: Explicitly request the use of our pybind11 package.
 2022-07-07 14:02:33 +02:00
Ricardo Wurmus
87b43ab562
gnu: xnnpack: Update to 0.0-2.ae108ef. 
* gnu/packages/machine-learning.scm (xnnpack): Update to 0.0-2.ae108ef.
* gnu/packages/patches/xnnpack-system-libraries.patch: Update.
 2022-07-07 14:02:33 +02:00
Ricardo Wurmus
c929619b36
gnu: python-pytorch-for-r-torch: Explicitly keep at 1.11.0. 
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Separate
from python-pytorch by overriding version and source.
 2022-07-07 14:02:33 +02:00
Efraim Flashner
4ddf903872
gnu: radicale: Update to 3.1.7. 
* gnu/packages/dav.scm (radicale): Update to 3.1.7.
 2022-07-07 14:46:29 +03:00
Pierre Neidhardt
dfeafdf109
gnu: emacs-sly-asdf: Update to 20220707. 
* gnu/packages/emacs-xyz.scm (emacs-sly-asdf): Update to 20220707.
 2022-07-07 09:22:41 +02:00
Nicolas Goaziou
20a0ed8cf5
gnu: emacs-org-re-reveal: Update to 3.14.1. 
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.14.1.
 2022-07-06 21:57:32 +02:00
Nicolas Goaziou
d3e406caf2
gnu: emacs-burly: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-burly): Update to 0.2.
 2022-07-06 21:46:07 +02:00
Nicolas Goaziou
e20011fda4
gnu: emacs-ctable: Update to 0.1.3. 
* gnu/packages/emacs-xyz.scm (emacs-ctable): Update to 0.1.3.
[arguments]<#:exclude>: Exclude unnecessary file leading to a build error.
 2022-07-06 21:42:52 +02:00
Nicolas Goaziou
eb9ea4c227
gnu: emacs-circe: Update to 2.12. 
* gnu/packages/emacs-xyz.scm (emacs-circe): Update to 2.12.
 2022-07-06 21:35:18 +02:00
Nicolas Goaziou
1fdba16821
gnu: emacs-elfeed-score: Update to 1.2.4. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.4.
 2022-07-06 21:26:39 +02:00
Ricardo Wurmus
17892c5f9c
gnu: mumi: Update to 0.0.2-1.0248507. 
* gnu/packages/mail.scm (mumi): Update to 0.0.2-1.0248507.
 2022-07-06 20:31:27 +02:00
Nicolas Goaziou
ca3ba07b17
gnu: emacs-apheleia: Update to 3.0. 
* gnu/packages/emacs-xyz.scm (emacs-apheleia): Update to 3.0.
 2022-07-06 20:30:07 +02:00
Leo Famulari
fe24e0c29c
gnu: OpenSSL 3.0.0: Update to 3.0.5 [fixes CVE-2022-2097 and CVE-2022-2274]. 
https://www.cve.org/CVERecord?id=CVE-2022-2097
https://www.cve.org/CVERecord?id=CVE-2022-2274

* gnu/packages/tls.scm (openssl-3.0): Update to 3.0.5.
 2022-07-06 14:28:24 -04:00
Leo Famulari
39dcbc7fa3
gnu: OpenSSL: Update to 1.1.1q [fixes CVE-2022-2097]. 
https://www.cve.org/CVERecord?id=CVE-2022-2097

* gnu/packages/tls.scm (openssl/fixed): Update to 1.1.1q.
 2022-07-06 14:28:21 -04:00
Nicolas Goaziou
7af6a2caff
gnu: emacs-ox-hugo: Update to 0.12.2. 
* gnu/packages/emacs-xyz.scm (emacs-ox-hugo): Update to 0.12.2.
 2022-07-06 20:25:52 +02:00
Nicolas Goaziou
0231871eb9
gnu: emacs-typit: Update to 0.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-typit): Update to 0.3.0.
 2022-07-06 20:21:03 +02:00
Nicolas Goaziou
ad5f1aa810
gnu: emacs-writegood-mode: Update to 2.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-writegood-mode): Update to 2.2.0.
 2022-07-06 20:19:15 +02:00
Nicolas Goaziou
8697f48a02
gnu: emacs-visual-fill-column: Update to 2.5. 
* gnu/packages/emacs-xyz.scm (emacs-visual-fill-column): Update to 2.5.
[source]: Update URL.
[home-page]: Update URL.
 2022-07-06 20:16:56 +02:00
Nicolas Goaziou
4ea381aa40
gnu: emacs-crdt: Update to 0.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-crdt): Update to 0.3.0.
 2022-07-06 20:11:42 +02:00
Nicolas Goaziou
059b6b3aba
gnu: emacs-citar: Update to 0.9.7. 
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 0.9.7.
 2022-07-06 20:06:57 +02:00
Nicolas Goaziou
2322567cdc
gnu: fsearch: Update to 0.1.4. 
* gnu/packages/search.scm (fsearch): Update to 0.1.4.
 2022-07-06 19:48:07 +02:00
Nicolas Goaziou
8821777808
gnu: rosegarden: Update to 22.06. 
* gnu/packages/music.scm (rosegarden): Update to 22.06.
 2022-07-06 19:45:01 +02:00
Nicolas Goaziou
7535fc29fb
gnu: emacs-ebdb: Update to 0.8.14. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.14.
 2022-07-06 19:27:33 +02:00
Ricardo Wurmus
e1ae5ab2b9
gnu: mumi: Update to 0.0.2-0.88a68ba. 
* gnu/packages/mail.scm (mumi): Update to 0.0.2-0.88a68ba.
 2022-07-06 18:10:49 +02:00
Ricardo Wurmus
563bb6eab1
gnu: Add python-torchvision. 
* gnu/packages/machine-learning.scm (python-torchvision): New variable.
 2022-07-06 17:16:15 +02:00
Ricardo Wurmus
d4d07ed92b
gnu: mumi: Update to 0.0.1-9.f73df11. 
* gnu/packages/mail.scm (mumi): Update to 0.0.1-9.f73df11.
 2022-07-06 14:21:32 +02:00
Ricardo Wurmus
6211ecfec8
gnu: Add hh-suite. 
* gnu/packages/bioinformatics.scm (hh-suite): New variable.
 2022-07-06 14:00:21 +02:00
Ricardo Wurmus
5bd7de4ced
gnu: Add rust-trycmd-0.13. 
* gnu/packages/crates-io.scm (rust-trycmd-0.13): New variable.
 2022-07-06 14:00:21 +02:00
Ricardo Wurmus
c813136330
gnu: Add rust-toml-edit-0.14. 
* gnu/packages/crates-io.scm (rust-toml-edit-0.14): New variable.
 2022-07-06 14:00:21 +02:00
Ricardo Wurmus
2fd79d33c6
gnu: Add rust-pretty-assertions-1. 
* gnu/packages/crates-io.scm (rust-pretty-assertions-1): New variable.
 2022-07-06 14:00:21 +02:00
Ricardo Wurmus
6a246e151b
gnu: Add rust-kstring-2. 
* gnu/packages/crates-io.scm (rust-kstring-2): New variable.
 2022-07-06 14:00:21 +02:00
Ricardo Wurmus
54e48e37d3
gnu: Add rust-snapbox-0.2. 
* gnu/packages/crates-io.scm (rust-snapbox-0.2): New variable.
 2022-07-06 14:00:21 +02:00
Ricardo Wurmus
e4d020d53a
gnu: Add rust-similar-2. 
* gnu/packages/crates-io.scm (rust-similar-2): New variable.
 2022-07-06 14:00:21 +02:00
Ricardo Wurmus
5c9461fb47
gnu: Add rust-libtest-mimic-0.3. 
* gnu/packages/crates-io.scm (rust-libtest-mimic-0.3): New variable.
 2022-07-06 14:00:21 +02:00
Efraim Flashner
422e5d3513
gnu: xl2tpd: Fix cross-compiling. 
* gnu/packages/vpn.scm (xl2tpd)[arguments]: Rewrite using gexps. Don't
hard-code CC as gcc.
 2022-07-06 12:44:16 +03:00
Jean-Pierre De Jesus DIAZ
8760decca7
gnu: connman: Fix cross-compilation. 
* gnu/packages/connman.scm (connman): Fix cross-compilation.
  [arguments]: Use G-Expressions. Set path to binaries at
  `#:configure-flags'.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-07-06 12:44:13 +03:00
Pierre Neidhardt
932bf7b293
gnu: sbcl-sketch: Include examples. 
* gnu/packages/lisp-xyz.scm (sbcl-sketch)[arguments]: Add sketch-examples to
asd-systems.
 2022-07-06 11:13:20 +02:00
Efraim Flashner
bf22d0d038
gnu: txr: Install vim syntax files. 
* gnu/packages/lisp.scm (txr)[arguments]: Add phase to install vim
syntax files.
 2022-07-06 12:06:53 +03:00
Paul A. Patience
c2fe78db73
gnu: txr: Update to 278. 
* gnu/packages/lisp.scm (txr): Update to 278.
[source]: Use 'https' in url.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-07-06 12:06:52 +03:00
André A. Gomes
ff181ed7a1
gnu: sbcl-quri: Update to 0.6.0. 
* gnu/packages/lisp-xyz.scm (sbcl-quri): Update to 0.6.0.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
 2022-07-06 11:05:36 +02:00
Philippe SWARTVAGHER
111bdcff48
gnu: hwloc: Update to 2.8.0 
* gnu/packages/mpi.scm (hwloc): Update to 2.8.0

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-07-06 11:49:31 +03:00
Juliana Sims
8bea879715
gnu: qpwgraph: Add qpwgraph. 
* gnu/packages/audio.scm (qpwgraph): Add qpwgraph.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-07-06 11:15:36 +03:00
Leo Famulari
3eeeaa26aa
gnu: Syncthing: Update to 1.20.3. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.20.3.
 2022-07-05 23:09:30 -04:00
Leo Famulari
fca8991850
gnu: Go: Update to 1.17.11. 
* gnu/packages/golang.scm (go-1.17): Update to 1.17.11.
 2022-07-05 23:09:27 -04:00
Leo Famulari
c72c3e851b
gnu: WebKit: Update to 2.36.4 [security fixes]. 
Fixes CVE-2022-22677 and CVE-2022-26710.

* gnu/packages/webkit.scm (%webkit-version, webkitgtk, wpewebkit):
  Update to 2.36.4.
 2022-07-05 18:46:24 -04:00
Ludovic Courtès
43cf8861b8
gnu: liblantern: Update to 0.8.0. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.8.0.
 2022-07-05 16:56:05 +02:00
Ludovic Courtès
20f55375dc
gnu: python-pytorch: Update to 1.11.0. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.11.0.
[source](snippet): Remove now unnecessary "caffe2/onnx/backend.cc"
substitution.
[arguments]: Add 'remove-caffe2-onnx-scripts' phase.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: Update.
 2022-07-05 16:56:04 +02:00
Ludovic Courtès
b211824f0a
gnu: onnx: Update to 1.12.0. 
* gnu/packages/machine-learning.scm (onnx): Update to 1.12.0.
 2022-07-05 16:56:04 +02:00
Nicolas Goaziou
f14895d0c4
gnu: emacs-org-ql: Sort inputs alphabetically. 
* gnu/packages/emacs-xyz.scm (emacs-org-ql)[propagated-inputs]: Sort inputs
alphabetically.
 2022-07-05 14:18:25 +02:00
Nicolas Goaziou
36253cb636
gnu: emacs-org-ql: Update to 0.6.2. 
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.6.2.
 2022-07-05 14:16:45 +02:00
Ricardo Wurmus
801be314d2
gnu: r-sandwich: Delete more generated vignette files. 
* gnu/packages/cran.scm (r-sandwich)[source]: Delete more files.
 2022-07-05 13:47:12 +02:00
Lars-Dominik Braun
06493e7388
gnu: guix: Update to 1.3.0-28.c23e0aa. 
Fixes a problem with the binary installer, whose guix command does not
understand manifest format 4 yet.

* gnu/packages/package-management.scm (guix): Update to 1.3.0-28.c23e0aa.
 2022-07-05 11:23:21 +02:00
Nicolas Goaziou
02ca41d901
gnu: emacs-parsebib: Update to 4.1. 
* gnu/packages/emacs-xyz.scm (emacs-parsebib): Update to 4.1.

Fixes bug#56346.
 2022-07-05 10:09:22 +02:00
Nicolas Goaziou
85bc10fdab
gnu: emacs-citar: Update to 0.9.6. 
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 0.9.6.
[propagated-inputs]: Add EMACS-CITAR.
 2022-07-05 09:52:51 +02:00
Marius Bakke
c2ce62b6db
gnu: python-django@3.2: Update to 3.2.14 [fixes CVE-2022-34265]. 
* gnu/packages/django.scm (python-django-3.2): Update to 3.2.14.
 2022-07-05 01:56:51 +02:00
Marius Bakke
87fcfb8365
gnu: Django: Update to 4.0.6 [fixes CVE-2022-34265]. 
* gnu/packages/django.scm (python-django-4.0): Update to 4.0.6.
 2022-07-05 01:56:50 +02:00
Hartmut Goebel
fdcd0133b2
gnu: Add trytond-stock-package-shipping-dpd. 
* gnu/packages/tryton.scm (trytond-stock-package-shipping-dpd): New variable.
 2022-07-04 16:10:53 +02:00
Hartmut Goebel
c8f49e5c70
gnu: Add trytond-google-maps. 
* gnu/packages/tryton.scm (trytond-google-maps): New variable.
 2022-07-04 16:10:53 +02:00
Hartmut Goebel
d0326574f8
gnu: Add trytond-gis. 
* gnu/packages/tryton.scm (trytond-gis): New variable.
 2022-07-04 16:10:52 +02:00
Hartmut Goebel
bc6780ee9a
gnu: Add python-geomet. 
* gnu/packages/python-xyz.scm (python-geomet): New variable.
 2022-07-04 16:10:51 +02:00
Nicolas Goaziou
477e561a46
gnu: emacs-emms-print-metadata: Improve package style. 
* gnu/packages/emacs-xyz.scm (emacs-emms-print-metadata)[arguments]: Use G-expressions.
 2022-07-04 15:37:31 +02:00
Nicolas Goaziou
97be378dae
gnu: emacs-emms: Update to 11. 
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 11.
 2022-07-04 15:36:17 +02:00
Nicolas Goaziou
44b832d719
gnu: emacs-rg: Improve package style. 
* gnu/packages/emacs-xyz.scm (emacs-rg)[arguments]: Use G-expressions and MAKE-FILE-WRITABLE.
 2022-07-04 15:33:15 +02:00
Nicolas Goaziou
30f8183b9a
gnu: emacs-rg: Update to 2.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-rg): Update to 2.2.1.
 2022-07-04 15:32:34 +02:00
Nicolas Goaziou
e5b3349128
gnu: fsearch: Update to 0.1.3. 
* gnu/packages/search.scm (fsearch): Update to 0.1.3.
 2022-07-04 15:31:08 +02:00
Nicolas Goaziou
942dcd30c4
gnu: manuskript: Update package style. 
* gnu/packages/text-editors.scm (manuskript)[arguments]: Use
G-expressions. Remove trailing #T.
 2022-07-04 15:28:07 +02:00
Nicolas Goaziou
ba2d504939
gnu: manuskript: Update to 0.14.0. 
* gnu/packages/text-editors.scm (manuskript): Update to 0.14.0.
 2022-07-04 15:25:14 +02:00
Nicolas Goaziou
c0f6287974
gnu: nauty: Update package style. 
* gnu/packages/maths.scm (nauty)[arguments]: Use G-expressions. Remove
trailing #T.
 2022-07-04 15:22:03 +02:00
Nicolas Goaziou
c3a2d354e3
gnu: nauty: Update to 2.7r4. 
* gnu/packages/maths.scm (nauty): Update to 2.7r4.
 2022-07-04 15:19:11 +02:00
Nicolas Goaziou
f5758b36da
gnu: tlpui: Use G-expressions. 
* gnu/packages/linux.scm (tlpui)[arguments]: Use G-expressions.
 2022-07-04 15:11:39 +02:00
Nicolas Goaziou
16c2372fe8
gnu: tlpui: Honor TESTS?. 
* gnu/packages/linux.scm (tlpui)[arguments]<#:phases>: Honor TESTS? in CHECK
phase.
 2022-07-04 15:08:36 +02:00
Nicolas Goaziou
56892af033
gnu: tlpui: Update to 1.5.0-1. 
* gnu/packages/linux.scm (tlpui): Update to 1.5.0-1.
 2022-07-04 15:07:54 +02:00
Pierre Neidhardt
741a5ec00a
gnu: emacs-sly-stepper: Update to 20220704. 
* gnu/packages/emacs-xyz.scm (emacs-sly-stepper): Update to 20220704.
 2022-07-04 14:52:24 +02:00
Ricardo Wurmus
a0125732ef
gnu: Add r-sccustomize. 
* gnu/packages/bioinformatics.scm (r-sccustomize): New variable.
 2022-07-04 13:48:58 +02:00
Ricardo Wurmus
602cf66c79
gnu: Add r-dittoseq. 
* gnu/packages/bioconductor.scm (r-dittoseq): New variable.
 2022-07-04 13:48:58 +02:00
Ricardo Wurmus
e05f62bf6a
gnu: Add r-ggprism. 
* gnu/packages/cran.scm (r-ggprism): New variable.
 2022-07-04 13:48:58 +02:00
Ricardo Wurmus
cbfcff5961
gnu: Add r-ggrastr. 
* gnu/packages/cran.scm (r-ggrastr): New variable.
 2022-07-04 13:48:57 +02:00
Ricardo Wurmus
4aee04819e
gnu: Add r-janitor. 
* gnu/packages/cran.scm (r-janitor): New variable.
 2022-07-04 13:48:57 +02:00
Ricardo Wurmus
12d206901a
gnu: Add r-paletteer. 
* gnu/packages/cran.scm (r-paletteer): New variable.
 2022-07-04 13:48:57 +02:00
Ricardo Wurmus
9c58c87aa9
gnu: Add r-prismatic. 
* gnu/packages/cran.scm (r-prismatic): New variable.
 2022-07-04 13:48:57 +02:00
Ricardo Wurmus
738e4eea14
gnu: Add r-colorway. 
* gnu/packages/statistics.scm (r-colorway): New variable.
 2022-07-04 13:48:57 +02:00
Jean-Pierre De Jesus DIAZ
31e4eaf52c
gnu: vpnc: Add bsd-2 license. 
* gnu/packages/vpn.scm (vpnc)[license]: Add bsd-2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:05 +02:00
Jean-Pierre De Jesus DIAZ
bb88505ee8
gnu: vpnc: Fix cross-compilation. 
* gnu/packages/vpn.scm (vpnc): Fix cross-compilation.
  [native-inputs]: Add conditional input of `this-package' (vpnc)
  to reuse the man page and add `pkg-config'.
  [arguments]: Use G-Expressions.
  [arguments]: Make use of `make-flags' instead of using substitutions.
  [arguments]: Remove unneeded deletion of `configure'.
  [arguments]: Use `pkg-config' to search for libgcrypt.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:05 +02:00
Sharlatan Hellseher
e8e7b4cdae
gnu: Add giza 
* gnu/packages/maths.scm (giza): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:05 +02:00
Zhu Zihao
84d413d2fd
gnu: solidity: Update to 0.8.15. 
* gnu/packages/solidity.scm (solidity): Update to 0.8.15.
[source]: Use Github release.
[arguments]<#:phases>: Remove phase 'create-commit_hash.txt'.
Restore phase 'configure' and phase 'install'.
Remove modifications applied to the phase 'build' and phase 'check'.
Add phase 'unbundle-3rd-party-dependencies'.
[inputs]: Add fmt-for-solidity, range-v3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:05 +02:00
Zhu Zihao
b49c2e558d
gnu: Add fmt-for-solidity. 
* gnu/packages/pretty-print.scm (fmt-for-solidity): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:05 +02:00
Zhu Zihao
da6ea4ab88
gnu: solidity: Use G-expressions. 
* gnu/packages/solidity.scm (solidity)[arguments]: Use G-expressions.
[native-inputs]: Use label-less style inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:05 +02:00
Zhu Zihao
0e64835b2e
gnu: z3: Prefer CMake to build the package. 
Z3 developer recommends to use CMake to build Z3 except the OCaml bindings.
Use CMake also enable us to cross compile z3.

* gnu/packages/maths.scm (z3)[build-system]: Use cmake-build-system.
[arguments]<#:configure-flags>: Add flags for CMake.
<#:phases>: Remove stale phase 'fix-compatability'.
In phase 'check', build the z3 test binary and don't test when cross
compiling.
Add phase 'compile-python-modules' phase to generate python bytecode cache for
z3 python binding.
Add phase 'fix-z3-library-path' to help z3 pythong binding to find the z3
shared library.

(ocaml-z3)[build-system]: Override the inherited value with 'gnu-build-system'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:04 +02:00
Zhu Zihao
cec5142183
gnu: z3: Update to 4.8.17. 
* gnu/packages/maths.scm (z3): Update to 4.8.17.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:04 +02:00
Zhu Zihao
3366be5db0
gnu: z3: Use G-expressions. 
* gnu/packages/maths.scm (z3)[arguments]: Use G-expressions.
[native-inputs]: Use label-less style.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:04 +02:00
Pierre Neidhardt
7cddd130df
gnu: sbcl-nkeymaps: Update to 1.0.0. 
* gnu/packages/lisp-xyz.scm (sbcl-nkeymaps): Update to 1.0.0.
 2022-07-04 11:03:06 +02:00
Efraim Flashner
b56dad9b2c
gnu: tbb: Fix building on riscv64-linux. 
* gnu/packages/tbb.scm (tbb)[source]: Add patch.
* gnu/packages/patches/tbb-other-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2022-07-04 11:14:41 +03:00
Leo Famulari
4d126e7762
gnu: linux-libre 4.9: Update to 4.9.321. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.321.
(linux-libre-4.9-pristine-source): Update hash.
 2022-07-03 23:56:14 -04:00
Leo Famulari
2a9e397043
gnu: linux-libre 4.14: Update to 4.14.286. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.286.
(linux-libre-4.14-pristine-source): Update hash.
 2022-07-03 23:56:14 -04:00
Leo Famulari
a2e56e6a1c
gnu: linux-libre 4.19: Update to 4.19.250. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.250.
(linux-libre-4.19-pristine-source): Update hash.
 2022-07-03 23:56:14 -04:00
Leo Famulari
71281783fc
gnu: linux-libre 5.4: Update to 5.4.203. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.203.
(linux-libre-5.4-pristine-source): Update hash.
 2022-07-03 23:56:14 -04:00
Leo Famulari
004be75424
gnu: linux-libre 5.10: Update to 5.10.128. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.128.
(linux-libre-5.10-pristine-source): Update hash.
 2022-07-03 23:56:13 -04:00
Leo Famulari
5df7a33af7
gnu: linux-libre 5.15: Update to 5.15.52. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.52.
(linux-libre-5.15-pristine-source): Update hash.
 2022-07-03 23:56:13 -04:00
Leo Famulari
9cd92b259b
gnu: linux-libre: Update to 5.18.9. 
* gnu/packages/linux.scm (linux-libre-5.18-version): Update to 5.18.9.
(linux-libre-5.18-pristine-source): Update hash.
 2022-07-03 23:56:13 -04:00
Raghav Gururajan
a78d101eb3
gnu: bitmask: Fix loading of GUI. 
* gnu/packages/vpn.scm (bitmask)[inputs]: Add qtgraphicaleffects.
 2022-07-03 21:59:20 -04:00
Christopher Baines
e069de452a
services: guix-build-coordinator: Fix passing parallel-hooks. 
The previous approach didn't support a simple alist.

* gnu/services/guix.scm (make-guix-build-coordinator-start-script): Fix
passing parallel-hooks in to the start gexp.
 2022-07-03 20:38:09 +01:00
Christopher Baines
430848c6bd
gnu: guix-build-coordinator: Update to 0-56.290ba67. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-56.290ba67.
 2022-07-03 20:38:04 +01:00
Pierre Neidhardt
f59f9afdb8
gnu: sbcl-nfiles: Update to 1.0.0. 
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 1.0.0.
 2022-07-03 20:39:06 +02:00
Pierre Neidhardt
875e803e60
gnu: abcl: Update to 1.9.0. 
* gnu/packages/java.scm (abcl): Update to 1.9.0.
* gnu/packages/patches/abcl-fix-build-xml.patch: Update for 1.9.0.
 2022-07-03 20:36:48 +02:00
Pierre Neidhardt
3a45cc634e
gnu: abcl: Fix loading of cl-* packages. 
* gnu/packages/java.scm (abcl)[native-search-paths]: Add XDG_DATA_DIRS where
to cl-* libraries get installed.
 2022-07-03 20:36:48 +02:00
Pierre Neidhardt
13cc3da6b6
gnu: libfixposix: Add C_INCLUDE_PATH to the native-search-paths. 
* gnu/packages/c.scm (libfixposix)[native-search-paths]: Add C_INCLUDE_PATH.

This fixes the loading of cl-iolib among others.
 2022-07-03 20:36:47 +02:00
Liliana Marie Prikler
eb44b1f304
gnu: renpy: Install sdk-fonts. 
Without these fonts, the launcher will fail to launch.

* gnu/packages/game-development.scm (renpy)[install]: Also recursively copy
sdk-fonts.
 2022-07-03 17:07:09 +02:00
Liliana Marie Prikler
65c9ecce2a
gnu: python-renpy: Update to 8.0.0. 
* gnu/packages/game-development.scm (python-renpy): Update to 8.0.0.
[source]: Revert back to url-fetch.  Also patch module/setup.py to not refer
to missing sources.
 2022-07-03 17:07:09 +02:00
Liliana Marie Prikler
4cd5f03088
gnu: python-pygame-sdl2: Update to 2.1.0-for-renpy-8.0.0. 
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0-for-renpy-8.0.0.
[source]: Revert to url-fetch.
Also add back the snippet to remove generated sources.
 2022-07-03 17:07:09 +02:00
Liliana Marie Prikler
3e987cf521
gnu: Add font-artifika. 
* gnu/packages/fonts.scm (font-artifika): New variable.
 2022-07-03 17:07:09 +02:00
r0man
b4815e570d
gnu: Add Climate Data Operators. 
* gnu/packages/geo.scm (cdo): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 16:04:23 +02:00
Antero Mejr
486251d440
gnu: Add python-deepdish. 
* gnu/packages/python-science.scm (python-deepdish): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 16:04:23 +02:00
Artyom V. Poptsov
91a5176538
gnu: Add utest-h. 
* gnu/packages/c.scm (utest-h): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 16:04:23 +02:00
Ludovic Courtès
9dfe5142bd
gnu: solidity: Remove input labels. 
* gnu/packages/solidity.scm (solidity)[native-inputs]: Remove labels.
 2022-07-03 16:04:22 +02:00
Pierre Neidhardt
bee129a806
gnu: sbcl-fof: Also build the fof/mf subsystem. 
* gnu/packages/lisp-xyz.scm (sbcl-fof)[arguments]: Also build the fof/mf subsystem.
[inputs]: Add sbcl-cl-json.
 2022-07-03 14:21:02 +02:00
Ricardo Wurmus
cba98b58bf
services: Add anonip-service-type. 
* gnu/services/web.scm (anonip-configuration): New record type.
(anonip-configuration?, anonip-configuration-anonip,
anonip-configuration-input, anonip-configuration-output,
anonip-configuration-skip-private?, anonip-configuration-column,
anonip-configuration-replacement, anonip-configuration-ipv4mask,
anonip-configuration-ipv6mask, anonip-configuration-increment,
anonip-configuration-delimiter, anonip-configuration-regex): New procedures.
(anonip-service-type): New service type.
* doc/guix.texi (Log Rotation): Add subheading for Anonip Service.
 2022-07-03 14:12:32 +02:00
Guillaume Le Vaillant
e0d2f8164e
gnu: sbcl: Disable SB-SIMD module. 
SB-SIMD gets enabled only on x86_64 CPUs supporting AVX2 instructions,
and some x86_64 CPUs don't.

Fixes <https://issues.guix.gnu.org/56353>.
Reported by Wensheng Xie <xiewensheng@hotmail.com>.

* gnu/packages/lisp.scm (sbcl)[arguments]: Disable SB-SIMD in the 'build' and
  'build-doc' phases.
 2022-07-03 12:07:31 +02:00
Trevor Richards
f89b581148
gnu: nim: Update to 1.6.6. 
* gnu/packages/nim.scm (nim): Updated to 1.6.6.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-03 10:12:24 +01:00
Christopher Baines
12787d532f
gnu: propeller-binutils: Remove source patches. 
None of the patches seem to apply. The patches that are not used with binutils
are probably too new for the specific commit used here, and the patches that
were once applied have probably been removed, so just don't apply any patches.

* gnu/packages/embedded.scm (propeller-binutils)[source]: Remove patches that
don't apply.
 2022-07-03 10:11:24 +01:00
Christopher Baines
207ef8758e
gnu: java-xpp3: Download source from ci.guix.gnu.org. 
The www.extreme.indiana.edu site is now serving a redirect:

  This site has been deprecated. You can access an archive of this site at
  https://web.archive.org/web/20210225153105/https://www.extreme.indiana.edu/.

Because this isn't a 404, as it probably should be, guix follows this redirect
and gets some content that isn't the file it asked for.

To avoid this incorrect behaviour, switch to using a ci.guix.gnu.org URL for
the file instead.

* gnu/packages/xml.scm (java-xpp3)[source]: Switch the uri to ci.guix.gnu.org.
 2022-07-03 10:11:24 +01:00
Efraim Flashner
c145e51844
gnu: curl: Skip failing test on 32-bit architectures. 
* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Use custom
'skip-failing-tests phase on all 32-bit architectures.
 2022-07-03 10:07:46 +03:00
Efraim Flashner
89fe091bb4
gnu: curl: Fix build on some systems. 
* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around
implicit function declaration.
* gnu/packages/patches/curl-easy-lock.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2022-07-03 10:07:38 +03:00
muradm
cec5a522e1
gnu: Add sqls 0.2.18. 
* gnu/packages/databases (sqls): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 01:41:07 +02:00
muradm
eed4494da7
gnu: Add go-github-com-sourcegraph-jsonrpc2 0.1.0. 
* gnu/packages/golang.scm (go-github-com-sourcegraph-jsonrpc2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 01:41:07 +02:00
muradm
9b6226bcda
gnu: Add go-github-com-gorilla-websocket 1.5.0. 
* gnu/packages/golang.scm (go-github-com-gorilla-websocket): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 01:41:06 +02:00
Ricardo Wurmus
4745be8514
gnu: r-ifultools: Patch in removed macros to fix build. 
* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility
macros.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
a0142125e6
gnu: r-with-tests: Update to 4.2.1. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
3bb39fc370
gnu: r-tcgabiolinks: Update to 2.24.3. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
af06365a3e
gnu: r-bionetstat: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
26981da96b
gnu: r-bgeedb: Update to 2.22.3. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
5f03154c15
gnu: r-ggbio: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
11f30bfa3d
gnu: r-rsubread: Update to 2.10.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
0a5a06ed24
gnu: r-biosigner: Update to 1.24.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
fbb6489abd
gnu: r-ropls: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
4aabb20226
gnu: r-genomicscores: Update to 2.8.2. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
b7a5534e61
gnu: r-clusterprofiler: Update to 4.4.4. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
a17b7aabfd
gnu: r-batchelor: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
7ff0669cee
gnu: r-matrixgenerics: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
605eda07df
gnu: r-zellkonverter: Update to 1.6.3. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
febec55f57
gnu: r-simplifyenrichment: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
c4113d3035
gnu: r-rtracklayer: Update to 1.56.1. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
5298b57d56
gnu: r-organismdbi: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
4e6026031a
gnu: r-limma: Update to 3.52.2. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
103d4d918f
gnu: r-ensembldb: Update to 2.20.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
5888776c87
gnu: r-gld: Update to 2.6.5. 
* gnu/packages/statistics.scm (r-gld): Update to 2.6.5.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
1f6de97557
gnu: r-clubsandwich: Update to 0.5.7. 
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
f6c9920f62
gnu: r-ranger: Update to 0.14.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
9360df02d1
gnu: r-car: Update to 3.1-0. 
* gnu/packages/statistics.scm (r-car): Update to 3.1-0.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
2998060a53
gnu: r-gtools: Update to 3.9.2.2. 
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.2.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
e9f9791b14
gnu: r-r-rsp: Update to 0.45.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.45.0.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
7d7712c9a0
gnu: r-r-utils: Update to 2.12.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.0.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
c37911f090
gnu: r-r-methodss3: Update to 1.8.2. 
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.2.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
eae36e7aed
gnu: r-rcpparmadillo: Update to 0.11.2.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.0.0.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
a12211cd93
gnu: r-dbplyr: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.1.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
1e57895c5c
gnu: r-rlang: Update to 1.0.3. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.3.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
2ddb659da1
gnu: r-dbi: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.3.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
54c86cf5f8
gnu: r-nlme: Update to 3.1-158. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-158.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
764938a242
gnu: r-spacetime: Update to 1.2-8. 
* gnu/packages/cran.scm (r-spacetime): Update to 1.2-8.
[native-inputs]: Add r-knitr.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
621a3350c4
gnu: r-pkgdown: Update to 2.0.5. 
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.5.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
3b656f1caf
gnu: r-downlit: Update to 0.4.1. 
* gnu/packages/cran.scm (r-downlit): Update to 0.4.1.
[propagated-inputs]: Add r-withr.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
b16b702db7
gnu: r-clustree: Update to 0.5.0. 
* gnu/packages/cran.scm (r-clustree): Update to 0.5.0.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
6e5a09f701
gnu: r-phangorn: Update to 2.9.0. 
* gnu/packages/cran.scm (r-phangorn): Update to 2.9.0.
[propagated-inputs]: Add r-generics.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
b427be3510
gnu: r-parsnip: Update to 1.0.0. 
* gnu/packages/cran.scm (r-parsnip): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
0a33bc0cba
gnu: r-tidyposterior: Update to 1.0.0. 
* gnu/packages/cran.scm (r-tidyposterior): Update to 1.0.0.
 2022-07-02 23:56:08 +02:00
Ricardo Wurmus
2b09daaf71
gnu: r-dials: Update to 1.0.0. 
* gnu/packages/cran.scm (r-dials): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
1c01ab0a84
gnu: r-rsample: Update to 1.0.0. 
* gnu/packages/cran.scm (r-rsample): Update to 1.0.0.
[propagated-inputs]: Remove r-lifecycle; add r-glue and r-pillar.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
67c83e104c
gnu: r-lobstr: Update to 1.1.2. 
* gnu/packages/cran.scm (r-lobstr): Update to 1.1.2.
[propagated-inputs]: Remove r-rcpp; add r-cpp11 and r-prettyunits.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
6cbcdb0369
gnu: r-igraph: Update to 1.3.2. 
* gnu/packages/cran.scm (r-igraph): Update to 1.3.2.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
0fd0ee6c4d
gnu: r-flexsurv: Update to 2.2. 
* gnu/packages/cran.scm (r-flexsurv): Update to 2.2.
[propagated-inputs]: Add r-ggplot2 and r-statmod.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
092c5d941e
gnu: r-hardhat: Update to 1.2.0. 
* gnu/packages/cran.scm (r-hardhat): Update to 1.2.0.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
1c16b70698
gnu: r-packrat: Update to 0.8.1. 
* gnu/packages/cran.scm (r-packrat): Update to 0.8.1.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
ec2a12025e
gnu: r-additivitytests: Update to 1.1-4.1. 
* gnu/packages/cran.scm (r-additivitytests): Update to 1.1-4.1.
[native-inputs]: Add r-knitr.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
9ccb54d8de
gnu: r-fda: Update to 6.0.4. 
* gnu/packages/cran.scm (r-fda): Update to 6.0.4.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
efeb6ba6a1
gnu: r-r-devices: Update to 2.17.1. 
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.1.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
c0df57aa1c
gnu: r-dalex: Update to 2.4.2. 
* gnu/packages/cran.scm (r-dalex): Update to 2.4.2.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
b64963fd0f
gnu: r-lintr: Update to 3.0.0. 
* gnu/packages/cran.scm (r-lintr): Update to 3.0.0.
[propagated-inputs]: Remove r-httr, r-rstudioapi, and r-testthat; add r-backports and
r-glue.
[native-inputs]: Add r-knitr.
 2022-07-02 23:56:07 +02:00
Ricardo Wurmus
9d727b4a06
gnu: r-yulab-utils: Update to 0.0.5. 
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.0.5.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
9b071ecc40
gnu: r-bookdown: Update to 0.27. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.27.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
a158aae45e
gnu: r-globals: Update to 0.15.1. 
* gnu/packages/cran.scm (r-globals): Update to 0.15.1.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
4f5791a006
gnu: r-epi: Update to 2.47. 
* gnu/packages/cran.scm (r-epi): Update to 2.47.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
83d3d1fd5c
gnu: r-strucchange: Update to 1.5-3. 
* gnu/packages/cran.scm (r-strucchange): Update to 1.5-3.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
87f7a1a287
gnu: r-waveslim: Update to 1.8.3. 
* gnu/packages/cran.scm (r-waveslim): Update to 1.8.3.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
b91165737d
gnu: r-admisc: Update to 0.29. 
* gnu/packages/cran.scm (r-admisc): Update to 0.29.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
e1235cebb1
gnu: r-performance: Update to 0.9.1. 
* gnu/packages/cran.scm (r-performance): Update to 0.9.1.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
dbdb2c549d
gnu: r-emmeans: Update to 1.7.5. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.5.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
f235789e4d
gnu: r-sandwich: Update to 3.0-2. 
* gnu/packages/cran.scm (r-sandwich): Update to 3.0-2.
[source]: Add snippet to remove generated files.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
e813a7e9fb
gnu: r-raster: Update to 3.5-21. 
* gnu/packages/cran.scm (r-raster): Update to 3.5-21.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus
d0e6af6159
gnu: r-itsadug: Update to 2.4.1. 
* gnu/packages/cran.scm (r-itsadug): Update to 2.4.1.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
1a43188826
gnu: r-tinytex: Update to 0.40. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.40.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
3a80c31e98
gnu: r-qap: Update to 0.1-2. 
* gnu/packages/cran.scm (r-qap): Update to 0.1-2.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
572a9f0947
gnu: r-processx: Update to 3.6.1. 
* gnu/packages/cran.scm (r-processx): Update to 3.6.1.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
c182db1f59
gnu: r-broom: Update to 1.0.0. 
* gnu/packages/cran.scm (r-broom): Update to 1.0.0.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
5136d669a4
gnu: r-idr: Update to 1.3. 
* gnu/packages/cran.scm (r-idr): Update to 1.3.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
139d7f6239
gnu: r-pkgload: Update to 1.3.0. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.0.
[propagated-inputs]: Remove r-rstudioapi; add r-fs and r-glue.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
54abf9ba3a
gnu: r-ps: Update to 1.7.1. 
* gnu/packages/cran.scm (r-ps): Update to 1.7.1.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
e1a2ff1793
gnu: r-partykit: Update to 1.2-16. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-16.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
f7434908a6
gnu: r-reordercluster: Update to 2.0. 
* gnu/packages/cran.scm (r-reordercluster): Update to 2.0.
[propagated-inputs]: Add r-gtools.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
961851c5d6
gnu: r-ggpmisc: Update to 0.4.7. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.7.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus
01790a6cd6
gnu: r-restfulr: Update to 0.0.15. 
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
 2022-07-02 23:56:04 +02:00
Julien Lepiller
c573c79ef3
gnu: ocaml-migrate-parsetree: Update to 2.4.0. 
* gnu/package/ocaml.scm (ocaml-migrate-parsetree): Update to 2.4.0.
 2022-07-02 22:25:46 +02:00
Julien Lepiller
b811245168
gnu: ocaml-lwt-react: Update to 1.2.0. 
* gnu/packages/ocaml.scm (ocaml-lwt-react): Update to 1.2.0.
 2022-07-02 22:25:39 +02:00
Julien Lepiller
f66ff1d267
gnu: ocaml-lwt: Update to 5.6.1. 
* gnu/packages/ocaml.scm (ocaml-lwt): Update to 5.6.1.
 2022-07-02 22:25:36 +02:00
Julien Lepiller
e0ecf85969
gnu: dune: Update to 3.3.1. 
* gnu/packages/ocaml.scm (dune): Update to 3.3.1.
 2022-07-02 22:25:33 +02:00
Julien Lepiller
ac0415fdd9
gnu: ocaml-camlp-streams: Update to 5.0.1. 
* gnu/packages/ocaml.scm (ocaml-camlp-streams): Update to 5.0.1.
 2022-07-02 22:25:18 +02:00
Stephen Paul Weber
b01043a8ce
gnu: Add ruby-blather. 
* gnu/packages/ruby.scm (ruby-blather): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-07-02 12:01:41 -04:00
Stephen Paul Weber
d633207a70
gnu: Add ruby-niceogiri. 
* gnu/packages/ruby.scm (ruby-niceogiri): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-07-02 12:01:40 -04:00
Liliana Marie Prikler
48ff4bfcd7
gnu: gdk-pixbuf: Add removal hint for libx11. 
* gnu/packages/gtk.scm (gdk-pixbuf)[propagated-inputs]: Add hint to remove
libx11 on core-updates.
 2022-07-02 13:49:42 +02:00
Tomasz Jeneralczyk
b02225b614
gnu: Add gdk-pixbuf-xlib. 
This was part of gtk-pixbuf before but was split into its own library
in version 2.42.0: https://gitlab.gnome.org/GNOME/gdk-pixbuf/-/tags/2.42.0

* gnu/packages/gtk.scm (gtk-pixbuf-xlib): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 13:49:35 +02:00