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68111 Commits

Author SHA1 Message Date
Ricardo Wurmus
fb73d7d10d
gnu: r-delayedarray: Update to 0.16.3. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.16.3.
 2021-04-08 13:28:23 +02:00
Paul Garlick
71ca8fd40b
gnu: Add texlive-mweights. 
* gnu/packages/tex.scm: New variable.
 2021-04-08 11:18:06 +01:00
Morgan Smith
bb4f47a7f6
gnu: axoloti-runtime: Simplify build. 
* gnu/packages/axoloti.scm (axoloti-runtime)[arguments]: Remove
unnecessary environment variable assignments in custom 'build phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-08 11:00:05 +03:00
Morgan Smith
5c9954490c
gnu: gcc-arm-none-eabi: Fix C++ header location. 
Previously the C++ headers where installed in the include folder, overwriting
some C headers.

* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)
[native-search-paths]: Add C++ header locations.
(gcc-arm-none-eabi-7-2018-q2-update)[native-search-paths]: Add C++
header locations.
(make-libstdc++-arm-none-eabi)[arguments]: Change C++ header install
location to include/c++.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-08 10:58:54 +03:00
Ricardo Wurmus
e1a38cbad8
gnu: r-sn: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-sn): Update to 2.0.0.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
2e36f4a1c4
gnu: r-sfsmisc: Update to 1.1-10. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-10.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
9493b3e9a7
gnu: r-e1071: Update to 1.7-6. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-6.
[propagated-inputs]: Add r-proxy.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
d98cecdd07
gnu: r-xml: Update to 3.99-0.6. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.6.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
d6fd6908c2
gnu: r-rsqlite: Update to 2.2.5. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.5.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
e2851d10db
gnu: r-catools: Update to 1.18.2. 
* gnu/packages/statistics.scm (r-catools): Update to 1.18.2.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
63c5888c43
gnu: r-dbplyr: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.1.1.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
55378aa21d
gnu: r-survival: Update to 3.2-10. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-10.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
971a997f75
gnu: r-stars: Update to 0.5-2. 
* gnu/packages/cran.scm (r-stars): Update to 0.5-2.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
0ec1b08a52
gnu: r-lwgeom: Update to 0.2-6. 
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-6.
[inputs]: Add zlib.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
5a2602032f
gnu: r-ragg: Update to 1.1.2. 
* gnu/packages/cran.scm (r-ragg): Update to 1.1.2.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
ded1599829
gnu: r-textshaping: Update to 0.3.3. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.3.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
2224e02779
gnu: r-bbotk: Update to 0.3.2. 
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.2.
 2021-04-08 03:10:13 +02:00
Ricardo Wurmus
6ec08e19b3
gnu: r-mlr3learners: Update to 0.4.5. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.4.5.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
ae3df456bb
gnu: r-mlr3misc: Update to 0.8.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.8.0.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
b83b2a3a4b
gnu: r-phangorn: Update to 2.6.3. 
* gnu/packages/cran.scm (r-phangorn): Update to 2.6.3.
[native-inputs]: Add r-knitr.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
6e93ab0666
gnu: r-qtl: Update to 1.48-1. 
* gnu/packages/cran.scm (r-qtl): Update to 1.48-1.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
3ba3fb71fb
gnu: r-altmeta: Update to 3.3. 
* gnu/packages/cran.scm (r-altmeta): Update to 3.3.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
ed5f5f0274
gnu: r-tidyposterior: Update to 0.1.0. 
* gnu/packages/cran.scm (r-tidyposterior): Update to 0.1.0.
[propagated-inputs]: Remove r-lifecycle; add r-tune and r-workflowsets.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
7ac3cefc64
gnu: r-slider: Update to 0.2.1. 
* gnu/packages/cran.scm (r-slider): Update to 0.2.1.
[propagated-inputs]: Add r-ellipsis.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
47d8e0c1ad
gnu: r-yardstick: Update to 0.0.8. 
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.8.
[propagated-inputs]: Add r-vctrs.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
f5c72b2cd7
gnu: r-muhaz: Update to 1.2.6.3. 
* gnu/packages/cran.scm (r-muhaz): Update to 1.2.6.3.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
3974902362
gnu: r-cpp11: Update to 0.2.7. 
* gnu/packages/cran.scm (r-cpp11): Update to 0.2.7.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
a387de2fa7
gnu: r-spatstat: Update to 2.1-0. 
* gnu/packages/cran.scm (r-spatstat): Update to 2.1-0.
 2021-04-08 03:10:12 +02:00
Ricardo Wurmus
3069514325
gnu: r-spatstat-linnet: Update to 2.1-1. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.1-1.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
2ef03976f3
gnu: r-spatstat-core: Update to 2.0-0. 
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.0-0.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
b6aa3ada62
gnu: r-spatstat-geom: Update to 2.0-1. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.0-1.
[propagated-inputs]: Remove r-spatstat-sparse.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
8561ce6a8c
gnu: r-spatstat-data: Update to 2.1-0. 
* gnu/packages/cran.scm (r-spatstat-data): Update to 2.1-0.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
1134bab6d0
gnu: r-spatstat-sparse: Update to 2.0-0. 
* gnu/packages/cran.scm (r-spatstat-sparse): Update to 2.0-0.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
35654c7285
gnu: r-spatstat-utils: Update to 2.1-0. 
* gnu/packages/cran.scm (r-spatstat-utils): Update to 2.1-0.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
213d7e7649
gnu: r-shapforxgboost: Update to 0.1.1. 
* gnu/packages/cran.scm (r-shapforxgboost): Update to 0.1.1.
[propagated-inputs]: Remove r-lightgbm.
[native-inputs]: Add r-knitr.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
e138e27410
gnu: r-lightgbm: Update to 3.2.0. 
* gnu/packages/cran.scm (r-lightgbm): Update to 3.2.0.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
13747f5814
gnu: r-latex2exp: Update to 0.5.0. 
* gnu/packages/cran.scm (r-latex2exp): Update to 0.5.0.
[native-inputs]: Add r-knitr.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
3a849bf973
gnu: r-packrat: Update to 0.6.0. 
* gnu/packages/cran.scm (r-packrat): Update to 0.6.0.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
13aca4c035
gnu: r-quanteda: Update to 3.0.0. 
* gnu/packages/cran.scm (r-quanteda): Update to 3.0.0.
[propagated-inputs]: Remove r-data-table, r-digest, r-extrafont, r-ggplot2,
r-ggrepel, r-jsonlite, r-network, r-proxyc, and r-sna.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
f3785d8a1f
gnu: r-shapes: Update to 1.2.6. 
* gnu/packages/cran.scm (r-shapes): Update to 1.2.6.
 2021-04-08 03:10:11 +02:00
Ricardo Wurmus
83f2c14790
gnu: r-univoutl: Update to 0.3. 
* gnu/packages/cran.scm (r-univoutl): Update to 0.3.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
b615567e4f
gnu: r-imager: Update to 0.42.8. 
* gnu/packages/cran.scm (r-imager): Update to 0.42.8.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
c3ebc726cd
gnu: r-actuar: Update to 3.1-2. 
* gnu/packages/cran.scm (r-actuar): Update to 3.1-2.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
ab5850c7d9
gnu: r-gamlss: Update to 5.3-4. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.3-4.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
bc65d86b94
gnu: r-gamlss-data: Update to 6.0-1. 
* gnu/packages/cran.scm (r-gamlss-data): Update to 6.0-1.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
ca88d9c027
gnu: r-dalex: Update to 2.2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.2.0.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
ad59fd9e60
gnu: r-dae: Update to 3.1-37. 
* gnu/packages/cran.scm (r-dae): Update to 3.1-37.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
3cfed8ca6a
gnu: r-styler: Update to 1.4.1. 
* gnu/packages/cran.scm (r-styler): Update to 1.4.1.
[native-inputs]: Add r-knitr.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
455f5339db
gnu: r-tweenr: Update to 1.0.2. 
* gnu/packages/cran.scm (r-tweenr): Update to 1.0.2.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
6b575bfd19
gnu: r-rms: Update to 6.2-0. 
* gnu/packages/cran.scm (r-rms): Update to 6.2-0.
 2021-04-08 03:10:10 +02:00
Ricardo Wurmus
ba22116deb
gnu: r-spdep: Update to 1.1-7. 
* gnu/packages/cran.scm (r-spdep): Update to 1.1-7.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
b5b7975fa1
gnu: r-sf: Update to 0.9-8. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-8.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
24e9b0cee9
gnu: r-units: Update to 0.7-1. 
* gnu/packages/cran.scm (r-units): Update to 0.7-1.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
dd3b0dd9b8
gnu: r-rmpfr: Update to 0.8-3. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-3.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
1efeb891ad
gnu: r-gargle: Update to 1.1.0. 
* gnu/packages/cran.scm (r-gargle): Update to 1.1.0.
[propagated-inputs]: Add r-cli, r-rappdirs, and r-rstudioapi.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
d47d3c9c9f
gnu: r-tiff: Update to 0.1-8. 
* gnu/packages/cran.scm (r-tiff): Update to 0.1-8.
[native-inputs]: Add pkg-config.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
3626d06745
gnu: r-biocmanager: Update to 1.30.12. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.12.
[native-inputs]: Add r-knitr.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
77ca025cfe
gnu: r-summarytools: Update to 0.9.9. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.9.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
c9dbd36856
gnu: r-remotes: Update to 2.3.0. 
* gnu/packages/cran.scm (r-remotes): Update to 2.3.0.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
43f88bc36d
gnu: r-gert: Update to 1.3.0. 
* gnu/packages/cran.scm (r-gert): Update to 1.3.0.
 2021-04-08 03:10:09 +02:00
Ricardo Wurmus
8917f29fba
gnu: r-gh: Update to 1.2.1. 
* gnu/packages/cran.scm (r-gh): Update to 1.2.1.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
799526f97c
gnu: r-effectsize: Update to 0.4.4-1. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.4-1.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
51d9bcf64b
gnu: r-ggeffects: Update to 1.0.2. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.0.2.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
8f0c5bd3eb
gnu: r-emmeans: Update to 1.5.5-1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.5.5-1.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
f1d038bd0e
gnu: r-magick: Update to 2.7.1. 
* gnu/packages/cran.scm (r-magick): Update to 2.7.1.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
60f6aa20e9
gnu: r-insight: Update to 0.13.2. 
* gnu/packages/cran.scm (r-insight): Update to 0.13.2.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
d54765907c
gnu: r-officer: Update to 0.3.18. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.18.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
d62f9f8de6
gnu: r-rbibutils: Update to 2.1. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.1.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
74554d5269
gnu: r-renv: Update to 0.13.2. 
* gnu/packages/cran.scm (r-renv): Update to 0.13.2.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
3d7e85a832
gnu: r-rastervis: Update to 0.50.1. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.1.
 2021-04-08 03:10:08 +02:00
Ricardo Wurmus
0795807434
gnu: r-arules: Update to 1.6-7. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-7.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
f802ddb242
gnu: r-sapa: Update to 2.0-3. 
* gnu/packages/cran.scm (r-sapa): Update to 2.0-3.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
5666f99199
gnu: r-tinytex: Update to 0.31. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.31.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
69c18192d7
gnu: r-vctrs: Update to 0.3.7. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.3.7.
[propagated-inputs]: Remove r-digest.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
ab9531e3b7
gnu: r-processx: Update to 3.5.1. 
* gnu/packages/cran.scm (r-processx): Update to 3.5.1.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
db62940b13
gnu: r-cli: Update to 2.4.0. 
* gnu/packages/cran.scm (r-cli): Update to 2.4.0.
[propagated-inputs]: Remove r-assertthat.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
c6976608be
gnu: r-vioplot: Update to 0.3.6. 
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.6.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
bd005c093a
gnu: r-broom: Update to 0.7.6. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.6.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
667f719b44
gnu: r-psych: Update to 2.1.3. 
* gnu/packages/cran.scm (r-psych): Update to 2.1.3.
[native-inputs]: Add r-knitr.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
2eafe4ee97
gnu: r-callr: Update to 3.6.0. 
* gnu/packages/cran.scm (r-callr): Update to 3.6.0.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
183e3b413c
gnu: r-reprex: Update to 2.0.0. 
* gnu/packages/cran.scm (r-reprex): Update to 2.0.0.
[propagated-inputs]: Add r-rstudioapi.
 2021-04-08 03:10:07 +02:00
Ricardo Wurmus
3e30068225
gnu: r-oenb: Update to 0.0.2. 
* gnu/packages/cran.scm (r-oenb): Update to 0.0.2.
 2021-04-08 03:10:06 +02:00
Ricardo Wurmus
c55b81d99f
gnu: r-ggpmisc: Update to 0.3.9. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.9.
 2021-04-08 03:10:06 +02:00
Ricardo Wurmus
08462c02c2
gnu: r-diffobj: Update to 0.3.4. 
* gnu/packages/cran.scm (r-diffobj): Update to 0.3.4.
 2021-04-08 03:10:06 +02:00
Ricardo Wurmus
a2b1c149df
gnu: Add r-workflowsets. 
* gnu/packages/cran.scm (r-workflowsets): New variable.
 2021-04-08 03:10:06 +02:00
Ricardo Wurmus
3118fde135
gnu: r-seurat: Update to 4.0.1. 
* gnu/packages/cran.scm (r-seurat): Update to 4.0.1.
[arguments]: Remove.
[propagated-inputs]: Replace r-spatstat with r-spatstat-core and
r-spatstat-geom.
 2021-04-08 03:10:06 +02:00
Tobias Geerinckx-Rice
2ffd92abf2
gnu: libxlsxwriter: Update to 1.0.1. 
* gnu/packages/xml.scm (libxlsxwriter): Update to 1.0.1.
 2021-04-07 23:55:52 +02:00
Tobias Geerinckx-Rice
887531a231
gnu: nsd: Update to 4.3.6. 
* gnu/packages/dns.scm (nsd): Update to 4.3.6.
 2021-04-07 23:55:52 +02:00
Tobias Geerinckx-Rice
096897889f
gnu: solarus: Update to 1.6.5. 
* gnu/packages/games.scm (solarus): Update to 1.6.5.
(solarus-quest-editor)[source]: Update hash.
[arguments]: Remove obsolete 'fix-qt-build phase.
 2021-04-07 23:55:51 +02:00
David Thompson
1ccc5cfc38
gnu: tiled: Update to 1.5.0. 2021-04-07 17:09:50 -04:00
Tobias Geerinckx-Rice
43110e8d4e
gnu: youtube-dl: Update to 2021.04.07. 
* gnu/packages/video.scm (youtube-dl): Update to 2021.04.07.
 2021-04-07 21:38:21 +02:00
Tobias Geerinckx-Rice
2b605ef3b1
gnu: libupnp: Update to 1.14.5 [fixes CVE-2021-28302]. 
* gnu/packages/upnp.scm (libupnp): Update to 1.14.5.
 2021-04-07 21:38:21 +02:00
Tobias Geerinckx-Rice
6b1b6b0ed0
gnu: nmrpflash: Update to 0.9.15. 
* gnu/packages/admin.scm (nmrpflash): Update to 0.9.15.
 2021-04-07 21:38:21 +02:00
Tobias Geerinckx-Rice
0bc6ae5843
gnu: tmux-xpanes: Update to 4.1.3. 
* gnu/packages/tmux.scm (tmux-xpanes): Update to 4.1.3.
 2021-04-07 21:38:20 +02:00
Paul Garlick
2d77c270f4
gnu: Add texlive-fontaxes. 
* gnu/packages/tex.scm: New variable.
 2021-04-07 18:51:02 +01:00
Pierre Neidhardt
8a32b6a542
gnu: sbcl-cl-webkit: Update to 20210407. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20210407.
 2021-04-07 19:31:57 +02:00
Mathieu Othacehe
37d8def701
gnu: cuirass: Update to 1.0.0-7.1b35a77. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-7.1b35a77.
 2021-04-07 15:28:08 +02:00
Alexandru-Sergiu Marton
a060977239
gnu: Add entt. 
* gnu/packages/cpp.scm (entt): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-04-07 13:43:40 +02:00
Mathieu Othacehe
a121f4c54a
gnu: cuirass: Update to 1.0.0-6.ec0be96. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-6.ec0be96.
 2021-04-07 11:57:34 +02:00
Tobias Geerinckx-Rice
d3184ee437
gnu: di: Update to 4.50. 
* gnu/packages/admin.scm (di): Update to 4.50.
 2021-04-07 00:55:46 +02:00