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876 Commits

Author SHA1 Message Date
Marius Bakke
5c3cb22c9b
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/chez.scm
	gnu/packages/docbook.scm
	gnu/packages/ebook.scm
	gnu/packages/gnome.scm
	gnu/packages/linux.scm
	gnu/packages/networking.scm
	gnu/packages/python-web.scm
	gnu/packages/python-xyz.scm
	gnu/packages/tex.scm
	gnu/packages/version-control.scm
	gnu/packages/xml.scm
	guix/build-system/dune.scm
	guix/build-system/go.scm
	guix/build-system/linux-module.scm
	guix/packages.scm
 2021-09-17 01:25:52 +02:00
Marius Bakke
11845c3a27
gnu: Remove python2-alembic. 
This package currently fails to build and has no users in Guix.

* gnu/packages/databases.scm (python2-alembic): Remove variable.
 2021-09-16 23:26:58 +02:00
Hartmut Goebel
b7ef1e4efb
gnu: python-sql: Update to 1.3.0. 
* gnu/packages/databases.scm (python-sql): Update to 1.3.0.
 2021-09-16 21:51:43 +02:00
Marius Bakke
0711ad0452
gnu: python-sqlalchemy: Update to 1.4.23. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.23.
[propagated-inputs]: Add PYTHON-GREENLET.
 2021-09-15 23:38:51 +02:00
Marius Bakke
d570b32a90
gnu: python-sadisplay: Update to 0.4.9. 
* gnu/packages/databases.scm (python-sadisplay): Update to 0.4.9.
[arguments]: New field.  Override check phase.
[native-inputs]: Remove PYTHON-NOSE.  Add PYTHON-PYTEST.
 2021-09-15 23:38:51 +02:00
Marius Bakke
9be916aaaf
gnu: python-alembic: Update to 1.7.1. 
* gnu/packages/databases.scm (python-alembic): Update to 1.7.1.
[propagated-inputs]: Add PYTHON-IMPORTLIB-RESOURCES.
 2021-09-15 23:38:50 +02:00
Ludovic Courtès
d9dfbf886d
Merge branch 'master' into core-updates-frozen 2021-09-07 14:19:08 +02:00
nixo
c017e0b62c
gnu: nheko: Update to 0.8.2. 
* gnu/packages/messaging.scm (nheko): Update to 0.8.2.
[source snippet]: Remove third_party folder.
[arguments]: Remove -fpermissive flag, remove remove-Werror phase, add phase
wrap-program and unbundle-dependencies.
[inputs]: Add gst-plugins-base, gst-plugins-bad, libnice, qtkeychain,
and unbundle blurhash, cpp-httplib and single-application, remove tweeny.
[native-inputs]: Add doxygen, graphviz used to build documentation.
[description]: Simplify by removing the long list, add new features.
(mtxclient): Update to 0.5.1.
[arguments]: Remove set-home phase.
* gnu/packages/databases.scm (lmdbxx): Update to 1.0.0.
[source]: Change repository to a fork required by nheko.
[home-page]: Update accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-09-03 22:08:51 +02:00
Efraim Flashner
0e6efd2c4a
gnu: postgresql-13: Update to 13.4. 
* gnu/packages/databases.scm (postgresql-13): Update to 13.4.
 2021-08-27 15:02:41 +03:00
Mathieu Othacehe
34a4f5c50c
gnu: python-apsw: Update to 3.36.0-r1. 
* gnu/packages/databases.scm (python-apsw): Update to 3.36.0-r1.
 2021-08-14 16:17:57 +02:00
Marius Bakke
c4133c43c7
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/algebra.scm
	gnu/packages/games.scm
	gnu/packages/golang.scm
	gnu/packages/kerberos.scm
	gnu/packages/mail.scm
	gnu/packages/python.scm
	gnu/packages/ruby.scm
	gnu/packages/scheme.scm
	gnu/packages/tex.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
 2021-08-12 00:30:27 +02:00
Marius Bakke
b029be2ee0
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
 2021-07-29 22:34:57 +02:00
Ricardo Wurmus
ef61998524
gnu: apache-arrow: Update to 5.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 5.0.0.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus
532cfc5bd2
gnu: python-pyarrow: Fix parquet support. 
Co-authored-by: Phil Beadling <phil@beadling.co.uk>.

* gnu/packages/databases.scm (python-pyarrow)[arguments]: Add phases
patch-cmake-variables, patch-parquet-library, and set-PYARROW_WITH_PARQUET.
[propagated-inputs]: Add "include" output of apache-arrow package.
 2021-07-28 20:31:06 +02:00
Efraim Flashner
1e0b984591
gnu: postgresql-9.6: Update to 9.6.23. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.23.
 2021-08-27 15:03:08 +03:00
Efraim Flashner
bb418a20ee
gnu: postgresql-10: Update to 10.18. 
* gnu/packages/databases.scm (postgresql-10): Update to 10.18.
 2021-08-27 15:03:08 +03:00
Efraim Flashner
3a58a0ed6a
gnu: postgresql-11: Update to 11.13. 
* gnu/packages/databases.scm (postgresql-11): Update to 11.13.
 2021-08-27 15:03:07 +03:00
Ryan Sundberg
75e117bac7
gnu: rocksdb: set TEST_TMPDIR for faster test i/o. 
The rocksdb test can take an egregious amount of time on a spinning HDD.
This will inherit guixbuild's /tmp mount for the rocksdb testing
directory.

* gnu/packages/databases.scm (rocksdb)[arguments]: set TEST_TMPDIR for
check phase

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-08-10 17:32:18 +02:00
Christopher Lemmer Webber
9455143907
Update copyright/name notices for Christine Lemmer-Webber. 
* doc/guix-cookbook.texi: Update copyright/name for Christine Lemmer-Webber.
* gnu/build/image.scm: Likewise.
* gnu/build/vm.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/assembly.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/emacs-xyz.scm: Likewise.
* gnu/packages/finance.scm: Likewise.
* gnu/packages/gnupg.scm: Likewise.
* gnu/packages/guile-xyz.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/haskell-xyz.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/mail.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/python-web.scm: Likewise.
* gnu/packages/python-xyz.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/sphinx.scm: Likewise.
* gnu/packages/ssh.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/services/networking.scm: Likewise.
* gnu/system/vm.scm: Likewise.
 2021-08-15 14:15:37 -04:00
Efraim Flashner
ff477f6571
gnu: tdb: Update to 1.4.5. 
* gnu/packages/databases.scm (tdb): Update to 1.4.5.
 2021-08-04 16:34:32 +03:00
Alexandre Hannud Abdo
b8e7b284fc
gnu: Add sequeler. 
* gnu/packages/databases.scm (sequeler): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-20 12:01:20 +03:00
Ludovic Courtès
0e47fcced4
Merge branch 'master' into core-updates 2021-07-18 19:50:01 +02:00
Tobias Geerinckx-Rice
f369695000
gnu: perl-sql-splitstatement: Update to 1.00023. 
* gnu/packages/databases.scm (perl-sql-splitstatement): Update to 1.00023.
[native-inputs]: Add perl-test-differences and perl-test-script.
 2021-07-02 03:05:58 +02:00
Tobias Geerinckx-Rice
0eb0fef346
gnu: perl-db-file: Update to 1.856. 
* gnu/packages/databases.scm (perl-db-file): Update to 1.856.
 2021-07-02 03:05:58 +02:00
Tobias Geerinckx-Rice
3e29bf169f
gnu: virtuoso-ose: Update to 7.2.6. 
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.6.
[source]: Get it from SourceForge.
[inputs]: Use the default OpenSSL version.
 2021-06-30 21:34:28 +02:00
zimoun
1f2ea75aed
gnu: python2-sqlparse: Remove package. 
* gnu/packages/databases.scm (python2-sqlparse): Remove variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-06-29 12:37:33 +02:00
Tobias Geerinckx-Rice
7f86f42671
gnu: mariadb-connector-c: Update to 3.1.13. 
* gnu/packages/databases.scm (mariadb-connector-c): Update to 3.1.13.
 2021-06-25 19:02:35 +02:00
Tobias Geerinckx-Rice
9dea3f101f
Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/cups.scm
	gnu/packages/python-web.scm
	gnu/packages/web.scm
	guix/build/maven/pom.scm
 2021-06-23 18:45:21 +02:00
Ricardo Wurmus
bf0f9dd051
gnu: apache-arrow: Update to 4.0.1. 
* gnu/packages/databases.scm (apache-arrow): Update to 4.0.1.
[arguments]: Remove trailing boolean; ensure that xsimd is not downloaded and
built anew.
[inputs]: Add xsimd.
 2021-06-21 12:17:23 +02:00
Marius Bakke
6f9a80b331
Merge branch 'master' into core-updates 
Note: this merge actually changes the 'curl' and 'python-attrs' derivations,
as part of solving caf4a7a2770ef4d05a6e18f40d602e51da749ddc and
12964df69a99de6190422c752fef65ef813f3b6b respectively.

4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it
cannot currently be tested.

 Conflicts:
	gnu/local.mk
	gnu/packages/aidc.scm
	gnu/packages/boost.scm
	gnu/packages/curl.scm
	gnu/packages/nettle.scm
	gnu/packages/networking.scm
	gnu/packages/python-xyz.scm
	gnu/packages/tls.scm
 2021-06-19 17:38:47 +02:00
Ricardo Wurmus
9e220f099d
gnu: Add nanodbc-for-irods. 
* gnu/packages/databases.scm (nanodbc-for-irods): New variable.
 2021-06-14 16:05:07 +02:00
Marius Bakke
b54bfa4ec4
gnu: postgresql: Remove replacement. 
* gnu/packages/databases.scm (postgresql-13): Update to 13.3.
[replacement]: Remove.
(postgresql-13.3): Remove variable.
 2021-06-13 01:00:46 +02:00
zimoun
5ce19343ca
gnu: python2-orator: Remove package. 
* gnu/packages/database.scm (python2-orator): Remove variable.
(python-orator)[properties]: Remove field.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:10:27 -04:00
Marius Bakke
8d59c262ad
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/algebra.scm
	gnu/packages/bioinformatics.scm
	gnu/packages/curl.scm
	gnu/packages/docbook.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/maths.scm
	gnu/packages/plotutils.scm
	gnu/packages/python-web.scm
	gnu/packages/python-xyz.scm
	gnu/packages/radio.scm
	gnu/packages/readline.scm
	gnu/packages/tls.scm
	gnu/packages/xml.scm
	gnu/packages/xorg.scm
 2021-06-06 21:16:32 +02:00
Simon Streit
841edfa491
gnu: redis: Update to 6.2.4 [security fixes]. 
Fixes CVE-2021-29477.

* gnu/packages/databases.scm (redis): Update to 6.2.4.
[arguments]: Disable the 'integration/failover' test.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-02 00:54:39 -04:00
Tobias Geerinckx-Rice
36d2e48c30
gnu: lmdb: Update to 0.9.29. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.29.
 2021-05-23 22:39:15 +02:00
Marius Bakke
4ea6852c5f
Merge branch 'master' into core-updates 2021-05-22 17:21:57 +02:00
Efraim Flashner
f9fc3373e7
gnu: perl-dbd-pg: Update to 3.14.2. 
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.14.2.
 2021-05-19 23:01:26 +03:00
Leo Famulari
1b7ea563cd
gnu: PostgreSQL 9: Update to 9.6.22 [fixes CVE-2021-{32027,32028,32029}]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.22.
 2021-05-17 15:05:18 -04:00
Leo Famulari
16da170f19
gnu: PostgreSQL 10: Update to 10.17 [fixes CVE-2021-{32027,32028,32029}]. 
* gnu/packages/databases.scm (postgresql-10): Update to 10.17.
 2021-05-17 15:05:18 -04:00
Leo Famulari
49a99a744a
gnu: PostgreSQL 11: Update to 11.12 [fixes CVE-2021-{32027,32028,32029}]. 
* gnu/packages/databases.scm (postgresql-11): Update to 11.12.
 2021-05-17 15:05:18 -04:00
Leo Famulari
ef221c8b71
gnu: PostgreSQL: Update to 13.3 [fixes CVE-2021-{32027,32028,32029}]. 
* gnu/packages/databases.scm (postgresql-13)[replacement]: Use postgresql-13.3.
(postgresql-13.2): Replace with ...
(postgresql-13.3): ... new variable.
 2021-05-17 15:05:14 -04:00
Ludovic Courtès
25487c3fe6
Merge branch 'master' into core-updates 2021-05-15 22:55:24 +02:00
BonfaceKilz
f8a4724c10
gnu: Add python-sqlalchemy-stubs. 
* gnu/packages/databases.scm (python-sqlalchemy-stubs): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-05-12 16:12:24 +05:30
Marius Bakke
1539af46d0
gnu: CMake: Update to 3.20.2. 
* gnu/packages/cmake.scm (%common-disabled-tests): Don't disable BootstrapTest.
(cmake-bootstrap): Update to 3.20.2.
[source](modules, snippet): Move from here ...
(cmake-minimal)[source]: ... to here.
* gnu/packages/patches/mariadb-cmake-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Add it.
 2021-05-09 23:43:32 +02:00
Marius Bakke
a9517c4f59
gnu: PostgreSQL: Remove replacement package. 
* gnu/packages/databases.scm (postgresql-13): Update to 13.2.
[replacement]: Remove.
(postgresql-13.2): Remove variable.
 2021-05-09 23:12:48 +02:00
Marius Bakke
fa3043fc8c
gnu: MariaDB: Incorporate grafted changes. 
* gnu/packages/databases.scm (mariadb)[replacement]: Remove.
[source](patches): New field.
(mariadb/fixed): Remove variable.
 2021-05-09 23:12:48 +02:00
Marius Bakke
f034264204
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/bioinformatics.scm
	gnu/packages/django.scm
	gnu/packages/gtk.scm
	gnu/packages/llvm.scm
	gnu/packages/python-web.scm
	gnu/packages/python.scm
	gnu/packages/tex.scm
	guix/build-system/asdf.scm
	guix/build/emacs-build-system.scm
	guix/profiles.scm
 2021-05-09 21:29:46 +02:00
Marius Bakke
151f1720e3
gnu: python-sqlparse: Remove unnecessary runtime dependencies. 
* gnu/packages/databases.scm (python-sqlparse)[arguments]: Override 'wrap'
phase.
 2021-05-05 23:48:20 +02:00
Marius Bakke
314f96421e
gnu: python-sqlparse: Update to 0.4.1. 
* gnu/packages/databases.scm (python-sqlparse): Update to 0.4.1.
 2021-05-05 23:48:19 +02:00