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545d0789fc
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13733 Commits

Author SHA1 Message Date
Raoul Jean Pierre Bonnal
545d0789fc
gnu: Add r-matrixmodels. 
* gnu/packages/statistics.scm (r-matrixmodels): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal
aa84100011
gnu: Add r-modelmetrics. 
* gnu/packages/statistics.scm (r-modelmetrics): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal
21cfad44c1
gnu: Add r-rcppeigen. 
* gnu/packages/statistics.scm (r-rcppeigen): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal
0392f82fd5
gnu: Add r-minqa. 
* gnu/packages/statistics.scm (r-minqa): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:05 +10:00
Danny Milosavljevic
5a717a95b3
gnu: wine: Update to 2.3. 
* gnu/packages/wine.scm (wine): Update to 2.3.
 2017-03-12 00:00:25 +01:00
Thomas Danckaert
4bff300b53
gnu: Add phonon-backend-gstreamer. 
* gnu/packages/kde-frameworks.scm (phonon-backend-gstreamer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 22:23:28 +01:00
Thomas Danckaert
5578c2987e
gnu: phonon: Install Qt extensions. 
* gnu/packages/kde-frameworks.scm (phonon)[arguments]: Add
-DPHONON-INSTALL_QT_EXTENSIONS_INTO_SYSTEM_QT configure flag, and patch the
installation directory.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 22:23:28 +01:00
Sergei Trofimovich
612af7ff66
gnu: re2: Set CXX for cross-compilation. 
* gnu/packages/regex.scm (re2)[arguments]: Specify CXX in #:make-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 22:23:28 +01:00
Mathieu Othacehe
e7b9dac7b1
gnu: cuirass: Update to 0.0.1 revision 5. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 22:23:28 +01:00
Leo Famulari
c4b15cb54f
gnu: imagemagick: Update to 6.9.7-10. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-10.
 2017-03-11 12:35:57 -05:00
rsiddharth
a15638034e
gnu: Add ghc-unexceptionalio. 
* gnu/packages/haskell.scm (ghc-unexceptionalio): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 12:43:36 +01:00
Arun Isaac
55fa53491b
gnu: Add emacs-memoize. 
* gnu/packages/emacs.scm (emacs-memoize): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-11 12:43:36 +01:00
Leo Famulari
c84c8f66f5
gnu: wget: Fix CVE-2017-6508. 
* gnu/packages/patches/wget-CVE-2017-6508.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/wget.scm (wget)[source]: Use it.
 2017-03-10 22:36:58 -05:00
Raoul Jean Pierre Bonnal
e08ad76658
gnu: Add r-fnn. 
* gnu/packages/statistics.scm (r-fnn): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:55:28 +10:00
Raoul Jean Pierre Bonnal
7711f61450
gnu: Add r-pbapply. 
* gnu/packages/statistics.scm (r-pbapply): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:51:50 +10:00
Raoul Jean Pierre Bonnal
d4cebae286
gnu: Add r-vgam. 
* gnu/packages/statistics.scm (r-vgam): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:47:02 +10:00
Ben Woodcroft
fbf45d6ea7
gnu: vsearch: Update to 2.4.2. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2.
 2017-03-11 11:37:15 +10:00
Raoul Jean Pierre Bonnal
036cd0cb8b
gnu: Add r-ape. 
* gnu/packages/bioinformatics.scm (r-ape): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal
a409e8b52f
gnu: Add r-fpc. 
* gnu/packages/statistics.scm (r-fpc): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal
5da4f84f1f
gnu: Add r-trimcluster. 
* gnu/packages/statistics.scm (r-trimcluster): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal
c0cab38e03
gnu: Add r-robustbase. 
* gnu/packages/statistics.scm (r-robustbase): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal
cda0720805
gnu: Add r-deoptimr. 
* gnu/packages/statistics.scm (r-deoptimr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal
c962816dc4
gnu: Add r-prabclus. 
* gnu/packages/statistics.scm (r-prabclus): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal
5638e15475
gnu: Add r-mclust. 
* gnu/packages/statistics.scm (r-mclust): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal
a1f2668e6c
gnu: Add r-flexmix. 
* gnu/packages/statistics.scm (r-flexmix): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal
1721fb4fe7
gnu: Add r-modeltools. 
* gnu/packages/statistics.scm (r-modeltools): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal
d5eca4f9ac
gnu: Add r-diptest. 
* gnu/packages/statistics.scm (r-diptest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Arun Isaac
a2fa9c3d1b
gnu: Add obnam. 
* gnu/packages/backup.scm (obnam): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-10 22:06:25 +01:00
Theodoros Foradis
b500dc2e83
gnu: icestorm: Replace reference in icebox_vlog. 
* gnu/packages/fpga.scm (icestorm)[arguments]: Add phase
"fix-usr-local" to replace reference to /usr/local/share.
 2017-03-10 21:15:39 +01:00
Danny Milosavljevic
97bede8466
gnu: dub: Update to 1.2.2. 
* gnu/packages/ldc.scm (dub): Update to 1.2.2.
 2017-03-10 19:39:52 +01:00
Ben J. Woodcroft
79f09fa239
gnu: hmmer: Build reproducibly. 
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.
* gnu/packages/bioinformatics.scm (hmmer): Use it.
 2017-03-10 20:31:30 +10:00
Ricardo Wurmus
5ded35d89d
gnu: Add sambamba. 
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New
variables.
 2017-03-10 10:13:59 +01:00
Leo Famulari
fc1428d295
gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640]. 
* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
 2017-03-10 01:44:39 -05:00
ng0
5c95465e27
gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'. 
* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet'
and '--with-lmdb'.
[inputs]: Add 'lmdb' and 'kyotocabinet'.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 20:36:44 -05:00
ng0
469609a987
gnu: neomutt: Update to 20170306. 
* gnu/packages/mail.scm (neomutt): Update to 20170306.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 20:36:39 -05:00
ng0
91c8724165
Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'." 
'kyotocabinet' is more current than tokyocabinet in development
and supported in neomutt aswell.

This reverts commit ef91e2b964.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 20:36:32 -05:00
ng0
d4f6f78ea3
gnu: hiawatha: Adjust description. 
* gnu/packages/web.scm (hiawatha)[description]: Adjust it.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 19:42:16 -05:00
ng0
f2a7ce5033
gnu: Add font-tamzen. 
* gnu/packages/fonts.scm (font-tamzen): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-09 19:23:07 -05:00
Tobias Geerinckx-Rice
ff797172b0
gnu: btrfs-progs/static: Correct description. 
* gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct
name of the btrfs-progs package and @command{} mark-up.
 2017-03-09 23:55:57 +01:00
Tobias Geerinckx-Rice
5595d4c1fd
gnu: btrfs-progs: Update to 4.10. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
 2017-03-09 23:55:54 +01:00
Tobias Geerinckx-Rice
ab84c13ff0
gnu: ibus-anthy: Update to 1.5.9. 
* gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
 2017-03-09 22:49:38 +01:00
Tobias Geerinckx-Rice
2704f5be09
gnu: ibus: Update to 1.5.15. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.15.
 2017-03-09 22:49:38 +01:00
Tobias Geerinckx-Rice
1b34a47da0
gnu: pius: Update to 2.2.4. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.4.
 2017-03-09 22:49:37 +01:00
Tobias Geerinckx-Rice
50b398298f
gnu: youtube-dl: Update to 2017.03.07. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
 2017-03-09 22:49:37 +01:00
Arun Isaac
d9e94c6170
gnu: graphicsmagick: Build with 16 bit quantum depth. 
Octave requires graphicsmagick to be built with 16 bit quantum depth.

* gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add
"--with-quantum-depth=16" and "--enable-quantum-library-names"
to #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-09 16:46:12 -05:00
Arun Isaac
9f91340166
gnu: octave: Build with curl and graphicsmagick. 
* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-09 16:46:09 -05:00
Marius Bakke
1f28b3195a
gnu: xf86-input-libinput: Update to 0.25.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
 2017-03-09 18:13:22 +01:00
Arun Isaac
b6b2ca5d19
gnu: Add python2-larch. 
* gnu/packages/python.scm (python2-larch): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 17:11:03 +01:00
Arun Isaac
c220f0b474
gnu: Add python2-tracing. 
* gnu/packages/python.scm (python2-tracing): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 17:09:17 +01:00
Arun Isaac
77e9941160
gnu: Add python2-ttystatus. 
* gnu/packages/python.scm (python2-ttystatus): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 16:53:23 +01:00