Commit Graph

5632 Commits

Author SHA1 Message Date
Ricardo Wurmus
810cff8557 gnu: Add CLIPper.
* gnu/packages/bioinformatics.scm (clipper): New variable.
2015-03-02 14:11:54 +01:00
Ricardo Wurmus
240ca4aae7 gnu: Add Scikit-learn.
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New
  variables.
2015-03-02 14:09:10 +01:00
宋文武
b283679951 gnu: xfconf: Re-enable tests.
* gnu/packages/xfce.scm (xfconf)[arguments]: Add #:phases.
2015-03-02 20:37:21 +08:00
Ricardo Wurmus
d57e6d0f8e gnu: Add MACS.
* gnu/packages/bioinformatics.scm (macs): New variable.
2015-03-02 11:33:13 +01:00
Ricardo Wurmus
a2fb1492af gnu: Add pybedtools.
* gnu/packages/bioinformatics.scm (python2-pybedtools): New variable.
2015-03-02 11:32:10 +01:00
Ricardo Wurmus
8d12be1eb1 gnu: Add pyyaml.
* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables.
2015-03-02 11:31:14 +01:00
Mark H Weaver
649b5e1bd4 gnu: libotr: Update to 4.1.0.
* gnu/packages/messaging.scm (libotr): Update to 4.1.0.
2015-03-02 00:09:09 -05:00
Mark H Weaver
9515b74554 Revert "services: xorg: Fix file descriptor leak from SLiM/xinitrc."
This reverts commit ec4a4c46ef,
because it broke XFCE.
2015-03-01 23:57:23 -05:00
Mark H Weaver
e013220eb6 gnu: xfconf: Update to 4.12.0.
* gnu/packages/xfce.scm (xfconf): Update to 4.12.0.  Disable tests.
2015-03-01 20:16:45 -05:00
Mark H Weaver
f6176e7870 gnu: gnu-pw-mgr: Update to 1.3.
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.3.
2015-03-01 19:44:13 -05:00
Mark H Weaver
0a5c308782 gnu: sharutils: Update to 4.15.
* gnu/packages/compression.scm (sharutils): Update to 4.15.
2015-03-01 19:42:57 -05:00
Mark H Weaver
5245251eaa gnu: gdb: Update to 7.9.
* gnu/packages/gdb.scm (gdb): Update to 7.9.
2015-03-01 19:35:46 -05:00
Mark H Weaver
3820d39739 Merge branch 'master' into core-updates
Conflicts:
	gnu/packages/gnupg.scm
2015-03-01 19:05:29 -05:00
Mark H Weaver
afff9058a0 gnu: gnupg: Update to 2.0.27.
* gnu/packages/gnupg.scm (gnupg): Update to 2.0.27.
2015-03-01 19:02:49 -05:00
Mark H Weaver
751be9a056 gnu: libgcrypt: Update to 1.6.3.
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.3.
2015-03-01 18:52:02 -05:00
Ludovic Courtès
6b9540bcff gnu: wget: Update to 1.16.2.
* gnu/packages/wget.scm (wget): Update to 1.16.2.
  [inputs]: Add PKG-CONFIG.
2015-03-01 22:22:43 +01:00
Ludovic Courtès
ec35d36495 gnu: libpsl: Fix link flag in 'libpsl.pc'.
* gnu/packages/web.scm (libpsl)[source]: Add 'snippet' and 'modules'
  fields.
2015-03-01 22:22:43 +01:00
Ludovic Courtès
9041d935c4 gnu: gnupg-1: Update to 1.4.19.
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.19.
2015-03-01 22:22:43 +01:00
Taylan Ulrich Bayırlı/Kammer
cb03a9b6a2 gnu: ecl: Update to version 15.2.21.
* gnu/packages/lisp.scm (ecl): Update to version 15.2.21, and disable the test
  suite because ECL now fails to initialize during 'make check'.
2015-03-01 21:29:33 +01:00
Mathieu Lirzin
76212b57f6 gnu: Add xbindkeys.
* gnu/packages/xdisorg.scm (xbindkeys): New variable.
2015-03-01 11:22:19 -05:00
Ricardo Wurmus
eb0fb087b9 gnu: Add AlsaModularSynth.
* gnu/packages/audio.scm (alsa-modular-synth): New variable.
2015-03-01 17:07:51 +01:00
Ricardo Wurmus
631ac903b6 gnu: Add clalsadrv.
* gnu/packages/audio.scm (clalsadrv): New variable.
2015-03-01 17:07:44 +01:00
Ludovic Courtès
bbe7a2ce0c Revert "build-system/gnu: Keep the sloppy conversion strategy during bootstrap."
This reverts commit b479c3ddaf.
This commit was the result of an incorrect characterization of the
problem; see the log of commit 87c8b92 for details.
2015-03-01 17:05:41 +01:00
Ludovic Courtès
87c8b92f50 gnu: commencement: Make UTF-8 locales available right after 'guile-final'.
In <http://hydra.gnu.org/build/263170>, we see:

   153: 12 [patch-usr-bin-file #:native-inputs #f ...]

  [...]

     ?: 1 [regexp-exec # ...]
  In ice-9/boot-9.scm:
   106: 0 [#<procedure 1998ec0 at ice-9/boot-9.scm:97:6 (thrown-k . args)> encoding-error ...]

  ice-9/boot-9.scm:106:20: In procedure #<procedure 1998ec0 at ice-9/boot-9.scm:97:6 (thrown-k . args)>:
  ice-9/boot-9.scm:106:20: Throw to key `encoding-error' with args `("scm_to_stringn" "cannot convert narrow string to output locale" 84 #f #f)'.

This is due to that fact that 'patch-/usr/bin/file' read a line
containing a byte sequence with bytes > 127 (namely a copyright sign.)
But this build was running with a C locale, and so those bytes cannot be
represented in that locale, hence this error.

This commit makes the UTF-8 locales available earlier such that
everything can be represented in locale encoding.

* gnu/packages/commencement.scm (glibc-utf8-locales-final): Move
  earlier; change "gzip" input to GZIP built with %BOOT4-INPUTS.
  (%boot5-inputs): Define to %BOOT4-INPUTS plus
  GLIBC-UTF8-LOCALES-FINAL.
  (gnu-make-final, coreutils-final, grep-final): Use it instead of
  %BOOT4-INPUTS.
  (gzip-final): Remove.
  (%boot6-inputs): New variable.
  (%final-inputs): Use it instead of %BOOT5-INPUTS.  Don't rely on
  GZIP-FINAL.
2015-03-01 17:03:04 +01:00
宋文武
8ccf68f9e0 gnu: xfwm4: Add inputs libdrm and libxdamage.
* gnu/packages/xfce.scm (xfwm4): Add libdrm and libxdamage to inputs.
2015-03-01 18:41:57 +08:00
宋文武
39a4d761c7 gnu: xfwm4: Update to 4.12.0.
* gnu/packages/xfce.scm (xfwm4): Update 4.12.0.
2015-03-01 18:41:02 +08:00
宋文武
046bcf2952 gnu: xfdesktop: Update to 4.12.0.
* gnu/packages/xfce.scm (xfdesktop): Update to 4.12.0.
2015-03-01 18:38:52 +08:00
宋文武
ad1540062b gnu: thunar-volman: Update to 0.8.1.
* gnu/packages/xfce.scm (thunar-volman): Update to 0.8.1.
2015-03-01 18:38:39 +08:00
宋文武
78daf79be1 gnu: thunar: Update to 1.6.6.
* gnu/packages/xfce.scm (thunar): Update to 1.6.6.
2015-03-01 18:38:22 +08:00
宋文武
2998f7181f gnu: xfce4-settings: Update to 4.12.0.
* gnu/packages/xfce.scm (xfce4-settings): Update to 4.12.0.
2015-03-01 18:38:06 +08:00
宋文武
3d75c320fa gnu: xfce4-session: Update to 4.12.0.
* gnu/packages/xfce.scm (xfce4-session): Update to 4.12.0.
2015-03-01 18:37:54 +08:00
宋文武
be3db25a52 gnu: xfce4-appfinder: Update to 4.12.0.
* gnu/packages/xfce.scm (xfce4-appfinder): Update to 4.12.0.
2015-03-01 18:37:37 +08:00
宋文武
bcd54994f0 gnu: xfce4-panel: Update to 4.12.0.
* gnu/packages/xfce.scm (xfce4-panel): Update to 4.12.0.
2015-03-01 18:37:20 +08:00
宋文武
3786be080f gnu: tumbler: Update to 0.1.31.
* gnu/packages/xfce.scm (tumbler): Update to 0.1.31.
2015-03-01 18:37:04 +08:00
宋文武
ea3fb8f183 gnu: garcon: Update to 0.4.0.
* gnu/packages/xfce.scm (garcon): Update to 0.4.0.
2015-03-01 18:36:48 +08:00
宋文武
9ade90ae52 gnu: exo: Update to 0.10.3.
* gnu/packages/xfce.scm (exo): Update to 0.10.3.
2015-03-01 18:36:26 +08:00
宋文武
7379ffc1a0 gnu: libxfce4ui: Update to 4.12.0.
* gnu/packages/xfce.scm (libxfce4ui): Update to 4.12.0.
2015-03-01 18:36:12 +08:00
宋文武
96fffedea0 gnu: libxfce4util: Update to 4.12.1.
* gnu/packages/xfce.scm (libxfce4util): Update to 4.12.1.
2015-03-01 18:35:14 +08:00
Ludovic Courtès
ec4a4c46ef services: xorg: Fix file descriptor leak from SLiM/xinitrc.
Previously processes started from the window manager would have a couple
of leaked file descriptors: writable /var/log/slim.log and readable
/gnu/store/…-xinitrc.

* gnu/services/xorg.scm (xinitrc)[builder]: Add 'close-all-fdes'.  Use
  it in 'exec-from-login-shell'.
2015-03-01 00:25:30 +01:00
Ludovic Courtès
b479c3ddaf build-system/gnu: Keep the sloppy conversion strategy during bootstrap.
* guix/build/gnu-build-system.scm (gnu-build): Leave
  %DEFAULT-PORT-CONVERSION-STRATEGY unchanged when 'string->bytevector'
  fails to convert to ISO-8859-1.  This is an attempt to work around the
  build failures at <http://hydra.gnu.org/build/263002>.
2015-03-01 00:23:07 +01:00
Ricardo Wurmus
74bbf89495 gnu: Add zita-alsa-pcmi.
* gnu/packages/audio.scm (zita-alsa-pcmi): New variable.
2015-02-28 22:30:19 +01:00
Ricardo Wurmus
8fb79e3dfb gnu: Add LV2 mda EPiano plugin.
* gnu/packages/audio.scm (lv2-mdaepiano): New variable.
2015-02-28 22:29:57 +01:00
Ricardo Wurmus
982471276b gnu: Add LV2 mda Piano plugin.
* gnu/packages/audio.scm (lv2-mdapiano): New variable.
2015-02-28 22:29:47 +01:00
Ricardo Wurmus
dd6b54b846 gnu: Add txt2man.
* gnu/packages/man.scm (txt2man): New variable.
2015-02-28 21:54:29 +01:00
David Thompson
654b27e56e gnu: mpd: Export package variables using define-public.
* gnu/packages/mpd.scm: Use define-public for package variables.  Remove
  #:exports from module declaration.
2015-02-28 14:05:20 -05:00
Paul van der Walt
773b2792e1 gnu: Add mpd-mpc.
* gnu/packages/mpd.scm (mpd-mpc): New variable.
2015-02-28 13:10:32 -05:00
Paul van der Walt
e42dc6249c gnu: ncmpcpp: Update to 0.6.2
* gnu/packages/mpd.scm (ncmpcpp): Update to version 0.6.2.  Add boost,
  readline, autotools inputs.
2015-02-28 09:54:12 -05:00
Mark H Weaver
f586c87705 gnu: Add 'file-name' fields for github source tarballs without a name.
* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
  gnu/packages/audio.scm (jack-2, lvtk),
  gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
  gnu/packages/game-development.scm (tiled),
  gnu/packages/games.scm (minetest-data, minetest, retroarch),
  gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
  gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
  gnu/packages/mail.scm (offlineimap, libetpan),
  gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
  gnu/packages/nutrition.scm (gourmet),
  gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
  gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
  'file-name' field to origin.
2015-02-28 09:49:01 -05:00
Mark H Weaver
722ec72244 gnu: Move autoconf-style phases after the unpack phase.
* gnu/packages/audio.scm (soundtouch)[arguments]: Move 'bootstrap'
  after 'unpack'.  Remove custom /usr/bin/file patching, which will
  now be handled by the 'patch-usr-bin-file' phase.
* gnu/packages/emacs.scm (emacs-w3m)[arguments]: Rename 'pre-configure'
  phase to 'autoconf' and move it after 'unpack'.
* gnu/packages/fontutils.scm (libuninameslist)[arguments]: Move 'bootstrap'
  phase after 'unpack'.
* gnu/packages/libevent.scm (libuv)[arguments]: Move 'autogen' phase after
  'unpack'.  Run "sh autogen.sh" instead of "./autogen.sh".
* gnu/packages/linux.scm (bridge-utils)[arguments]: Move 'bootstrap' phase
  after 'unpack'.
* gnu/packages/mail.scm (libetpan)[arguments]: Move 'autogen' phase after
  'unpack'.  Run "sh autogen.sh" instead of "./autogen.sh".  Setenv
  "NOCONFIGURE" before running autogen.sh.
* gnu/packages/package-management.scm (guix-devel)[arguments]: Move
  'bootstrap' phase after 'unpack'.  Run "sh autogen.sh" instead of
  "./autogen.sh".
* gnu/packages/rdf.scm (lrdf)[arguments]: Move 'autoreconf' phase after
  'remove-out-of-tree-references' phase.
* gnu/packages/tor.scm (privoxy)[arguments]: Move 'autoconf' phase after
  'unpack'.
* gnu/packages/web.scm (libpsl)[arguments]: Move 'bootstrap' phase after
  'unpack'.  Run "sh autogen.sh" instead of "./autogen.sh".  Remove
  'fix-autogen-shebang' phase.
2015-02-28 09:49:01 -05:00
Paul van der Walt
17dd4329eb gnu: mail: Add copyright line.
* gnu/packages/mail.scm (mu): Add forgotten copyright line.
2015-02-28 09:48:28 -05:00