Ludovic Courtès
ca71942445
Switch to Guile-Gcrypt.
...
This removes (guix hash) and (guix pk-crypto), which now live as part of
Guile-Gcrypt (version 0.1.0.)
* guix/gcrypt.scm, guix/hash.scm, guix/pk-crypto.scm,
tests/hash.scm, tests/pk-crypto.scm: Remove.
* configure.ac: Test for Guile-Gcrypt. Remove LIBGCRYPT and
LIBGCRYPT_LIBDIR assignments.
* m4/guix.m4 (GUIX_ASSERT_LIBGCRYPT_USABLE): Remove.
* README: Add Guile-Gcrypt to the dependencies; move libgcrypt as
"required unless --disable-daemon".
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/bash.scm, guix/derivations.scm, guix/docker.scm,
guix/git.scm, guix/http-client.scm, guix/import/cpan.scm,
guix/import/cran.scm, guix/import/crate.scm, guix/import/elpa.scm,
guix/import/gnu.scm, guix/import/hackage.scm,
guix/import/texlive.scm, guix/import/utils.scm, guix/nar.scm,
guix/pki.scm, guix/scripts/archive.scm,
guix/scripts/authenticate.scm, guix/scripts/download.scm,
guix/scripts/hash.scm, guix/scripts/pack.scm,
guix/scripts/publish.scm, guix/scripts/refresh.scm,
guix/scripts/substitute.scm, guix/store.scm,
guix/store/deduplication.scm, guix/tests.scm, tests/base32.scm,
tests/builders.scm, tests/challenge.scm, tests/cpan.scm,
tests/crate.scm, tests/derivations.scm, tests/gem.scm,
tests/nar.scm, tests/opam.scm, tests/pki.scm,
tests/publish.scm, tests/pypi.scm, tests/store-deduplication.scm,
tests/store.scm, tests/substitute.scm: Adjust imports.
* gnu/system/vm.scm: Likewise.
(guile-sqlite3&co): Rename to...
(gcrypt-sqlite3&co): ... this. Add GUILE-GCRYPT.
(expression->derivation-in-linux-vm)[config]: Remove.
(iso9660-image)[config]: Remove.
(qemu-image)[config]: Remove.
(system-docker-image)[config]: Remove.
* guix/scripts/pack.scm: Adjust imports.
(guile-sqlite3&co): Rename to...
(gcrypt-sqlite3&co): ... this. Add GUILE-GCRYPT.
(self-contained-tarball)[build]: Call 'make-config.scm' without
#:libgcrypt argument.
(squashfs-image)[libgcrypt]: Remove.
[build]: Call 'make-config.scm' without #:libgcrypt.
(docker-image)[config, json]: Remove.
[build]: Add GUILE-GCRYPT to the extensions Remove (guix config) from
the imported modules.
* guix/self.scm (specification->package): Remove "libgcrypt", add
"guile-gcrypt".
(compiled-guix): Remove #:libgcrypt.
[guile-gcrypt]: New variable.
[dependencies]: Add it.
[*core-modules*]: Remove #:libgcrypt from 'make-config.scm' call.
Add #:extensions.
[*config*]: Remove #:libgcrypt from 'make-config.scm' call.
(%dependency-variables): Remove %libgcrypt.
(make-config.scm): Remove #:libgcrypt.
* build-aux/build-self.scm (guile-gcrypt): New variable.
(make-config.scm): Remove #:libgcrypt.
(build-program)[fake-gcrypt-hash]: New variable.
Add (gcrypt hash) to the imported modules. Adjust load path
assignments.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-GCRYPT.
[arguments]: In 'wrap-program' phase, add GUILE-GCRYPT to the search
path.
2018-09-04 17:25:11 +02:00
Ricardo Wurmus
ac906cb7bb
import: pypi: Support recursive importing.
...
* guix/import/pypi.scm (guess-requirements): Use upstream names.
(compute-inputs): Return the upstream dependency names as an additional value.
(make-pypi-sexp): Likewise.
(pypi->guix-package): Memoize it.
(pypi-recursive-import): New procedure.
* guix/scripts/import/pypi.scm (show-help, %options): Accept "recursive"
option.
(guix-import-pypi): Use pypi-recursive-import.
* doc/guix.texi (Invoking guix import): Document it.
2018-08-30 15:22:22 +02:00
Ricardo Wurmus
e37f889404
import: pypi: Also guess dependencies from *.egg-info/requires.txt.
...
* guix/import/pypi.scm (guess-requirements): Extract "requires.txt" from the
egg-info directory in addition to "requirements.txt"; strip off version
constraints; use call-with-temporary-directory.
2018-08-30 15:22:14 +02:00
Ricardo Wurmus
a3ece51a29
import: stackage: Support recursive importing.
...
* guix/import/hackage.scm (hackage-name->package-name): Export procedure.
* guix/import/stackage.scm (lts-info-packages-lts-info): Fix match expression.
(stackage-recursive-import): New procedure.
(stackage->guix-package): Memoize results.
* guix/scripts/import/stackage.scm (show-help, %options,
guix-import-stackage): Support recursive importing.
* doc/guix.texi (Invoking guix import): Document option.
2018-08-30 15:22:06 +02:00
Ludovic Courtès
bab4dc58f7
import: github: Filter out tags that don't look like version numbers.
...
* guix/import/github.scm (latest-released-version): Filter out RELEASE
if it doesn't start with digit.
2018-08-20 16:32:18 +02:00
Ludovic Courtès
45c01189cc
import: github: Get /tags when /releases returns the empty list.
...
This allows "guix refresh" to work for many packages where it would
previously fail with "no updater for PACKAGE".
* guix/import/github.scm (fetch-releases-or-tags): New procedure.
(latest-released-version): Use it instead of calling 'json-fetch'.
Adjust 'hash-ref' call.
2018-08-20 16:32:18 +02:00
Ludovic Courtès
2766282f5a
import: github: Request API v3 in the 'Accept' header.
...
* guix/import/json.scm (json-fetch): Add #:headers argument and honor it.
* guix/import/github.scm (latest-released-version): Pass #:headers to
'json-fetch'.
2018-08-20 16:32:18 +02:00
Ricardo Wurmus
a928596162
import: hackage: Support recursive importing.
...
* guix/import/hackage.scm (hackage-recursive-import): New procedure.
(hackage-module->sexp): Return dependencies alongside dependencies.
(hackage->guix-package): Memoize results.
* guix/scripts/import/hackage.scm (show-help, %options, guix-import-hackage):
Support recursive importing.
* doc/guix.texi (Invoking guix import): Document option.
2018-08-11 18:53:46 +02:00
Tobias Geerinckx-Rice
9aba9b1278
Migrate search.cpan.org home pages to metacpan.org.
...
The venerable search.cpan.org has retired[0].
[0]: https://log.perl.org/2018/05/goodbye-search-dot-cpan-dot-org.html
* guix/import/cpan.scm (cpan-home): Generate metacpan.org home page URIs.
Update all previously generated ones in (gnu packages) to their
canonical new homes.
2018-08-11 17:22:31 +02:00
Ricardo Wurmus
f60784228a
import: cabal, hackage: Avoid error when custom setup section is missing.
...
Fixes <https://debbugs.gnu.org/32387 >.
* guix/import/cabal.scm (eval-cabal): Avoid mis-match when the custom-setup
section cannot be created.
* guix/import/hackage.scm (cabal-custom-setup-dependencies->names): Do not
crash when cabal-package-custom-setup returns #F.
2018-08-07 20:39:12 +02:00
Danny Milosavljevic
d804d0b9ef
import: hackage: Emit native-inputs in the importer.
...
* guix/import/cabal.scm (cabal-custom-setup-dependencies): Export.
(cabal-package-custom-setup): Export.
(<cabal-package>): New field "custom-setup".
(make-cabal-package): Modify.
(eval-cabal): Modify.
* guix/import/hackage.scm (cabal-dependencies->names): Factor out...
(cabal-test-dependencies->names): ...this.
(cabal-custom-setup-dependencies->names): New procedure.
(hackage-module->sexp): Modify.
2018-07-27 11:42:53 +02:00
Marius Bakke
8440db459a
import: PyPI: Update redirected URL.
...
* guix/import/pypi.scm (guix-package->pypi-name, pypi->guix-package): Update
docstrings.
(pypi-package?): Test for pypi.org, too.
(pypi-fetch): s/pypi.python.org/pypi.org/
* tests/pypi.scm ("guix-package->pypi-name, new URL style",
"pypi->guix-package", "pypi->guix-package, wheels"): Likewise.
2018-07-24 17:42:04 +02:00
Danny Milosavljevic
e29067d22e
import: hackage: Fix typo.
...
* guix/import/cabal.scm (cabal-custom-setuo-name): Rename to...
(cabal-custom-setup-name): ...this.
2018-07-13 15:23:40 +02:00
Danny Milosavljevic
e39a44f340
import: hackage: Evaluate "-any" and "-none" version comparison operators.
...
* guix/import/cabal.scm (eval-cabal): Modify.
* tests/hackage.scm (test-cabal-4): New variable and test.
(test-cabal-5): New variable and test.
(test-cabal-6): New variable and test.
2018-07-12 20:35:04 +02:00
Danny Milosavljevic
ecba50bb79
import: hackage: Support "-any" and "-none" version comparison operators.
...
* guix/import/cabal.scm (make-cabal-parser): Modify.
(is-any): New variable.
(is-none): New variable.
(lex-any): New procedure.
(lex-none): New procedure.
(lex-word): Modify.
(eval-cabal): Modify.
2018-07-12 09:06:48 +02:00
Danny Milosavljevic
314b63e0b4
import: hackage: Support "custom-setup" field.
...
Fixes <https://bugs.gnu.org/23961 >.
* guix/import/cabal.scm (make-cabal-parser): Modify.
(is-custom-setup): New variable.
(lex-custom-setup): New procedure.
(is-id): Modify.
(lex-version): Modify.
(<cabal-custom-setup>): New record type.
(eval-cabal): Modify.
(dependencies): Add parameter.
2018-07-12 09:06:48 +02:00
Oleg Pykhalov
88388766f7
import: gem: Add recursive import.
...
* doc/guix.texi (Invoking guix import): Document gem recursive import.
* guix/import/gem.scm (gem->guix-package): Return package and dependencies
values.
(gem-recursive-import): New procedure.
* guix/scripts/import/gem.scm (show-help, %options): Add recursive option.
(guix-import-gem): Use 'gem-recursive-import'.
* tests/gem.scm (test-json): Rename to 'test-foo-json'.
("gem->guix-package"): Use 'test-foo-json'.
(test-bar-json, test-bundler-json): New variables.
("gem-recursive-import"): New test.
2018-07-11 07:08:54 +03:00
Julien Lepiller
b24443bff9
guix: Add opam importer.
...
* guix/scripts/import.scm (importers): Add opam.
* guix/scripts/import/opam.scm: New file.
* guix/import/opam.scm: New file.
* tests/opam.scm: New file.
* Makefile.am: Add them.
* doc/guix.texi (Invoking guix import): Document it.
2018-07-10 10:11:01 +02:00
Oleg Pykhalov
ae6fa00af0
import: elpa: Check if 'fetch-elpa-package' rest argument is null.
...
* guix/import/elpa.scm (fetch-elpa-package): Check if 'rest' is null.
2018-07-03 07:19:13 +03:00
Ludovic Courtès
e8cb9c01c6
build: Remove checks for 'nix-instantiate'.
...
* guix/import/snix.scm (open-nixpkgs): Use "nix-instantiate"
unconditionally.
* configure.ac: Remove check for 'nix-instantiate'.
* guix/config.scm.in (%nix-instantiate): Remove.
* guix/self.scm (%dependency-variables): Remove '%nix-instantiate'.
(make-config.scm): Remove it from the generated "config.scm".
* build-aux/build-self.scm (%dependency-variables, make-config.scm):
Likewise.
2018-06-18 23:19:51 +02:00
Oleg Pykhalov
38212ff7b9
import: utils: Import more dependencies.
...
* guix/import/utils.scm (recursive-import): Import more dependencies.
2018-06-12 19:51:03 +03:00
Jelle Licht
3edf0d53a4
import: json: Consolidate duplicate json-fetch functionality.
...
* guix/import/json.scm (json-fetch): Return a list or hash table.
(json-fetch-alist): New procedure.
* guix/import/github.scm (json-fetch*): Remove.
(latest-released-version): Use json-fetch.
* guix/import/cpan.scm (module->dist-name): Use json-fetch-alist.
(cpan-fetch): Likewise.
* guix/import/crate.scm (crate-fetch): Likewise.
* guix/import/gem.scm (rubygems-fetch): Likewise.
* guix/import/pypi.scm (pypi-fetch): Likewise.
* guix/import/stackage.scm (stackage-lts-info-fetch): Likewise.
2018-06-10 22:15:12 +02:00
Oleg Pykhalov
62d78ec076
import: elpa: Remove unused (gnu packages) module.
...
* guix/import/elpa.scm: Remove unused (gnu packages) module.
2018-06-08 17:05:18 +03:00
Oleg Pykhalov
74032da3a2
import: elpa: Add recursive import.
...
* doc/guix.texi (Invoking guix import): Document elpa recursive import.
* guix/import/elpa.scm (elpa-package->sexp): Return package and
dependencies values.
(elpa-guix-name, elpa-recursive-import): New procedures.
* guix/scripts/import/elpa.scm (show-help, %options): Add recursive
option.
(guix-import-elpa): Use 'elpa-recursive-import'.
2018-06-08 14:58:33 +03:00
Oleg Pykhalov
ae9e5d6602
import: utils: Add recursive-import.
...
* guix/import/cran.scm (cran-guix-name, cran-recursive-import): New
procedures.
(recursive-import): Remove procedure.
* guix/import/utils.scm (guix-name, recursive-import): New procedures.
* guix/scripts/import/cran.scm (guix-import-cran): Use
'cran-recursive-import' procedure.
2018-06-08 14:58:33 +03:00
Ricardo Wurmus
41f17554d8
import: cran: Update to Bioconductor 3.7.
...
* guix/import/cran.scm (%bioconductor-version): Update to 3.7.
2018-06-02 13:39:13 +02:00
ng0
4a78fd4617
Correct name and Email for ng0.
...
* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-03-20 17:17:58 +01:00
Ludovic Courtès
9bb1838c3f
import: elpa: Return 'license:gpl3+ for ELPA only.
...
Fixes <https://bugs.gnu.org/30836 >.
Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>.
* guix/import/elpa.scm (elpa-package->sexp): Add LICENSE parameter and
honor it.
(elpa->guix-package): Pass 'license:gpl3+ only when REPO is 'gnu.
2018-03-18 22:26:34 +01:00
Konrad Hinsen
07d2fed2f6
import: elpa: Fix typos in documentation strings
...
* guix/import/elpa.scm: Fix typos in docstrings.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-18 00:02:05 +01:00
Konrad Hinsen
44dd3d579d
import: elpa: use https in download URLs
...
* guix/import/elpa.scm (elpa-url): Use HTTPS.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-18 00:02:05 +01:00
Ludovic Courtès
b402f4ee34
import: cpan: Drop "v" prefix from version strings.
...
Fixes <https://bugs.gnu.org/30641 >.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.
* guix/import/cpan.scm (cpan-version): Drop the "v" prefix when it is
there.
2018-03-01 14:54:55 +01:00
Ludovic Courtès
5e2495d09e
import: utils: 'alist->package' allows false license.
...
Reported by <pkill9@runbox.com>.
Fixes <https://bugs.gnu.org/30470 >.
* guix/import/utils.scm (alist->package): Check whether 'license' is
false and set the 'license' field to #f in this case.
* tests/import-utils.scm ("alist->package with false license"): New
test.
2018-02-16 11:10:12 +01:00
Tobias Geerinckx-Rice
8286215326
gnu: Use one spelling for ‘copyright’.
...
* gnu/packages/gtk.scm: Standardise on ‘copyright’ spelling in
file headers.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl-check.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* guix/import/gem.scm: Likewise.
* guix/import/hackage.scm: Likewise.
2018-01-10 18:21:20 +01:00
Ludovic Courtès
1e63ecee0b
import: crate: Gracefully deal with missing license info.
...
Reported by Fis Trivial <ybbs.daans@hotmail.com>.
Fixes <https://bugs.gnu.org/28987 >.
* guix/import/crate.scm (crate-fetch): Check whether the "license" info
is present.
2018-01-08 11:45:35 +01:00
Ricardo Wurmus
25e51b1c45
guix: Add archive support for bioconductor-uri.
...
* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL.
* guix/import/cran.scm (latest-bioconductor-release, fetch-description):
Adjust because bioconductor-uri now returns a list.
2017-11-07 08:14:09 +01:00
Ricardo Wurmus
27baf50956
import: cran: Use Bioconductor 3.6 helpers.
...
* guix/import/cran.scm (bioconductor-mirror-url): Remove procedure.
(fetch-description): Extract DESCRIPTION file from tarball for Bioconductor
packages.
(latest-bioconductor-release): Use latest-bioconductor-package-version.
2017-11-07 08:13:35 +01:00
Ricardo Wurmus
84dfdc5759
import: cran: Add support for Bioconductor 3.6.
...
* guix/import/cran.scm (%bioconductor-version,
%bioconductor-packages-list-url): New variables.
(bioconductor-packages-list, latest-bioconductor-package-version): New
procedures.
2017-11-07 08:13:34 +01:00
Ricardo Wurmus
6b46b04f91
import: utils: Add string helpers.
...
* guix/import/utils.scm (read-lines, chunk-lines): New procedures.
2017-11-07 08:07:51 +01:00
Tobias Geerinckx-Rice
b5c7574b2f
Revert "import: cpan: Use HTTPS for home pages."
...
This reverts commit 29f7bf59d5
2017-10-30 17:20:42 +01:00
Tobias Geerinckx-Rice
29f7bf59d5
import: cpan: Use HTTPS for home pages.
...
* guix/import/cpan.scm (cpan-home): Use HTTPS.
* tests/cpan.scm ("cpan->guix-package"): Expect it.
2017-10-29 17:32:35 +01:00
Tobias Geerinckx-Rice
6d176ad379
import: cpan: Actually use CPAN-HOME.
...
* guix/import/cpan.scm (cpan-module->sexp): Use the CPAN-HOME procedure.
2017-10-29 17:32:35 +01:00
Tobias Geerinckx-Rice
73f33b9379
import: cpan: Add trailing "/" to CPAN-HOME.
...
Prevent regression after commit e4bc172730
2017-10-29 17:32:12 +01:00
Eric Bavier
e4bc172730
import: cpan: Add trailing "/" on home-page.
...
This appeases 'guix lint', which otherwise complains about permanent
redirects.
* guix/import/cpan.scm (cpan-module->sexp): Add trailing "/" on home-page.
* tests/cpan.scm ("cpan->guix-package"): Adjust accordingly.
2017-10-28 18:20:59 -05:00
Eric Bavier
23055424f2
import: cpan: Propagate imported dependencies.
...
This is most often the need for perl module dependencies.
* guix/import/cpan.scm (cpan-module->sexp): 'inputs -> 'propagated-inputs.
* tests/cpan.scm ("cpan->guix-package"): Adjust accordingly.
2017-10-28 18:20:58 -05:00
Ludovic Courtès
0a2ce1ea0a
import: elpa: Do not abort when failing to download the archive.
...
* guix/import/elpa.scm (elpa-fetch-archive): Use 'http-fetch/cached'
directly instead of 'call-with-downloaded-file'. This ensures we don't
just abort when networking access is lacking, which is required to allow
'guix refresh -c refresh' to proceed.
2017-10-28 09:45:54 +02:00
Ludovic Courtès
90297811a9
import: github: Gracefully handle multiple-URL origins.
...
* guix/import/github.scm (latest-release)[origin-github-uri]: New
procedure. Use it.
2017-10-28 09:45:54 +02:00
Tobias Geerinckx-Rice
5713bbf157
Use HTTPS for bioconductor.org.
...
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
Ludovic Courtès
90eaa9419a
import: cpan: Load (gnu packages perl) lazily.
...
* guix/import/cpan.scm: Remove dependency on (gnu packages perl).
(perl-package): New procedure.
(%corelist, core-module?): Use it instead of referring to 'perl'.
2017-10-10 23:12:04 +02:00
Ludovic Courtès
b719ddbbbb
import: pypi: Remove unneeded import.
...
* guix/import/pypi.scm: Remove unneeded import.
2017-10-10 23:12:03 +02:00
Ricardo Wurmus
5e892bc365
import: Add generic data to package converter.
...
* guix/import/utils.scm (build-system-modules, lookup-build-system-by-name,
specs->package-lists, source-spec->object, alist->package): New procedures.
* tests/import-utils.scm: Add tests for alist->package.
2017-09-28 13:10:11 +02:00
