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49907 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
3a18b1cc2e
gnu: r-knitr: Update home page. 
* gnu/packages/statistics.scm (r-knitr)[home-page]: Follow (HTTPS)
redirection.
 2020-03-10 00:12:07 +01:00
Tobias Geerinckx-Rice
b1d3e63bc2
gnu: r-ouch: Use HTTPS home page. 
* gnu/packages/cran.scm (r-ouch)[home-page]: Use HTTPS.
 2020-03-10 00:12:07 +01:00
Tobias Geerinckx-Rice
56451c7894
gnu: libinput: Note libinput-minimal inheritance. 
* gnu/packages/freedesktop.scm (libinput): Add a warning comment.
 2020-03-10 00:12:06 +01:00
Tobias Geerinckx-Rice
ef617dedd2
gnu: csvkit: Update to 1.0.5. 
* gnu/packages/wireservice.scm (csvkit): Update to 1.0.5.
[source]: Remove upstreamed patch.
* gnu/packages/patches/csvkit-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice
77dbc1c537
gnu: slang: Use HTTPS home page. 
* gnu/packages/slang.scm (slang)[home-page]: Use HTTPS.
 2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice
59e884a211
gnu: polipo: Use HTTPS home page. 
* gnu/packages/web.scm (polipo)[home-page]: Use HTTPS.
 2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice
1bcf4ba44b
gnu: iperf: Use HTTPS home page. 
* gnu/packages/networking.scm (iperf)[home-page]: Use HTTPS.
 2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice
91fa58c739
gnu: xdotool: Use HTTPS home page. 
* gnu/packages/xdisorg.scm (xdotool)[home-page]: Use HTTPS.
 2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice
0622403d35
gnu: compface: Update home page. 
* gnu/packages/mail.scm (compface)[home-page]: Follow (HTTPS)
redirection.
 2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice
f30444b9da
gnu: compface: Don't use NAME in source URI. 
* gnu/packages/mail.scm (compface)[source]: Hard-code NAME.
 2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice
88c6a1812c
gnu: Use HTTPS for rstudio.github.io home pages. 
* gnu/packages/cran.scm (r-shinydashboard, r-shinythemes, r-dt)
[home-page]: Use HTTPS.
 2020-03-09 23:55:41 +01:00
Ludovic Courtès
827abd5deb
tests: getmail: Provide a pre-initialized user account password. 
* gnu/tests/mail.scm (%getmail-os): Rewrite so that the "alice" account
has a password.
(run-getmail-test)[test]("set password for alice"): Remove.  This would
not work since commit 8b9cad01e9 since
'passwd' would no longer be in $PATH.
 2020-03-09 23:46:36 +01:00
Ludovic Courtès
0e42a1643e
tests: docker-system: Increase memory requirement. 
The system image would no longer fit in memory, starting from commit
8c7eb58453.

* gnu/tests/docker.scm (run-docker-system-test): Set 'memory-size' to 3500.
 2020-03-09 23:46:36 +01:00
Ludovic Courtès
7e5f016cdb
tests: zabbix: Set 'PATH' before running the scripts. 
This is a followup to 8b9cad01e9.

* gnu/tests/monitoring.scm (run-zabbix-server-test)[test]: Set 'PATH' in
MARIONETTE.
 2020-03-09 23:46:36 +01:00
Ludovic Courtès
8a49e63b2d
gnu: Add rr. 
* gnu/packages/debug.scm (rr): New variable.
 2020-03-09 23:46:36 +01:00
Tobias Geerinckx-Rice
51f30d4fdf
Revert "gnu: libinput: Update to 1.15.3." 
This reverts commit 1fad0b8674.
It rebuilds the world through libinput-minimal.
 2020-03-09 21:26:58 +01:00
Tobias Geerinckx-Rice
18d59640e1
gnu: python-sphinxcontrib-websupport: Update to 1.2.0. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-websupport): Update to
1.2.0.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
11be15730c
gnu: python-sphinxcontrib-serializinghtml: Update to 1.1.4. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-serializinghtml): Update
to 1.1.4.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
99533bebac
gnu: python-sphinxcontrib-qthelp: Update to 1.0.3. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-qthelp): Update to 1.0.3.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
25b576a9db
gnu: python-sphinxcontrib-htmlhelp: Update to 1.0.3. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-htmlhelp): Update to 1.0.3.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
ccac5118f7
gnu: python-sphinxcontrib-devhelp: Update to 1.0.2. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-devhelp): Update to 1.0.2.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
f49b8c14fb
gnu: python-sphinxcontrib-applehelp: Update to 1.0.2. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-applehelp): Update to 1.0.2.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
a0093a71c5
gnu: youtube-dl: Update to 2020.03.08. 
* gnu/packages/video.scm (youtube-dl): Update to 2020.03.08.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
9d7a3562c2
gnu: perl-catalyst-devel: Update to 1.40. 
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.40.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
99e8ce528c
gnu: spice-protocol: Update to 0.14.1. 
* gnu/packages/spice.scm (spice-protocol): Update to 0.14.1.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
e4e44f24bd
gnu: perl-timedate: Update to 2.32. 
* gnu/packages/perl.scm (perl-timedate): Update to 2.32.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
0e591daa81
gnu: perl-xs-object-magic: Update to 0.05. 
* gnu/packages/perl.scm (perl-xs-object-magic): Update to 0.05.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
2317f330e8
gnu: perl-datetime-format-strptime: Update to 1.77. 
* gnu/packages/perl.scm (perl-datetime-format-strptime): Update to 1.77.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
940f9c75a6
gnu: perl-datetime: Update to 1.52. 
* gnu/packages/perl.scm (perl-datetime): Update to 1.52.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
3a83862db0
gnu: man-db: Update to 2.9.1. 
* gnu/packages/man.scm (man-db): Update to 2.9.1.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
c3bde0b7af
gnu: libseccomp: Update to 2.4.3. 
* gnu/packages/linux.scm (libseccomp): Update to 2.4.3.
[source]: Remove upstreamed patch.
* gnu/packages/patches/libseccomp-open-aarch64.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
1fad0b8674
gnu: libinput: Update to 1.15.3. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.15.3.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
4227a73189
gnu: libostree: Update to 2020.2. 
* gnu/packages/package-management.scm (libostree): Update to 2020.2.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
cf566106b6
gnu: tcsh: Use HTTPS home page. 
* gnu/packages/shells.scm (tcsh)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
a0087cf58d
gnu: mit-krb5: Use HTTPS home page. 
* gnu/packages/kerberos.scm (mit-krb5)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
80fafdba1c
gnu: speedcrunch: Use HTTPS home page. 
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
ef752646aa
gnu: ding: Use HTTPS home page. 
* gnu/packages/dictionaries.scm (ding)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
b3851745f1
gnu: plotutils: Use HTTPS home page. 
* gnu/packages/plotutils.scm (plotutils)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
17dea2e279
gnu: idris: Use HTTPS home page. 
* gnu/packages/idris.scm (idris)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
8a34536f00
gnu: xfce4-power-manager: Update to 1.7.0. 
* gnu/packages/xfce.scm (xfce4-power-manager): Update to 1.7.0.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
0babcd9d83
gnu: xfce4-power-manager: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (xfce4-power-manager)[source]: Hard-code NAME.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
d4e8859ba5
gnu: xfburn: Update to 0.6.2. 
* gnu/packages/xfce.scm (xfburn): Update to 0.6.2.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
7ae397ac14
gnu: claws-mail: Update to 3.17.5. 
* gnu/packages/mail.scm (claws-mail): Update to 3.17.5.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
633c32fbd9
gnu: s6: Update to 2.9.0.1. 
* gnu/packages/skarnet.scm (s6): Update to 2.9.0.1.
 2020-03-09 16:01:17 +01:00
Tobias Geerinckx-Rice
bead506555
gnu: s6-linux-init: Update to 1.0.4.0. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.4.0.
 2020-03-09 16:01:17 +01:00
Guillaume Le Vaillant
0ccc138517
gnu: Add spatialite-tools. 
* gnu/packages/geo.scm (spatialite-tools): New variable.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
133de9ab38
gnu: Add readosm. 
* gnu/packages/geo.scm (readosm): New variable.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
e8906d86ee
gnu: spatialite-gui: Add missing input. 
* gnu/packages/geo.scm (spatialite-gui)[inputs]: Add libjpeg-turbo.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
3cf0a5dc53
gnu: gdal: Update to 3.0.4. 
* gnu/packages/geo.scm (gdal): Update to 3.0.4.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
9147d1216e
gnu: proj: Update to 6.3.1. 
* gnu/packages/geo.scm (proj): Update to 6.3.1.
 2020-03-09 15:21:45 +01:00
Roel Janssen
4960c03d1d
gnu: Add perl-math-vecstat. 
* gnu/packages/perl.scm (perl-math-vecstat): New variable.
 2020-03-09 15:18:13 +01:00
Roel Janssen
b4e1ca0675
gnu: python-semver: Fix build. 
* gnu/packages/python-xyz.scm: Add python-appdirs, python-distlib,
  python-importlib-metadata, python-filelock, and python-six to native-inputs
  in order to run the test suite.
 2020-03-09 14:50:35 +01:00
Roel Janssen
c0f6446579
gnu: Fix build of python-velocyto. 
* gnu/packages/bioinformatics.scm (python-velocyto): Add python-joblib to
  native-inputs to make the test suite run succesfully.
 2020-03-09 14:34:41 +01:00
Efraim Flashner
fb29d7d70c
gnu: Add vim-asyncrun. 
* gnu/packages/vim.scm (vim-asyncrun): New variable.
 2020-03-09 14:45:38 +02:00
Efraim Flashner
61daf2dbc9
gnu: Add nyancat. 
* gnu/packages/toys.scm (nyancat): New variable.
 2020-03-09 14:31:25 +02:00
Roel Janssen
b6574660e3
gnu: Update python-statsmodels to 0.11.1. 
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1.
 2020-03-09 13:01:27 +01:00
Pierre Neidhardt
6dfc981a98
gnu: Add sycamore. 
* gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables.
 2020-03-09 10:55:46 +01:00
Pierre Neidhardt
698a34482a
gnu: emacs-sly: Update to 20200228. 
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228.
 2020-03-09 09:42:04 +01:00
Ricardo Wurmus
c3b6d61df3
gnu: r-desolve: Update to 1.28. 
* gnu/packages/cran.scm (r-desolve): Update to 1.28.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
103de43c67
gnu: r-umap: Update to 0.2.5.0. 
* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0.
[native-inputs]: Add r-knitr.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
ea20989d87
gnu: r-rcppannoy: Update to 0.0.16. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16.
[native-inputs]: Remove r-knitr.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
207ba868a3
gnu: r-quantmod: Update to 0.4-16. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
bcbcd17d45
gnu: r-vcd: Update to 1.4-6. 
* gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
fec7f576b4
gnu: r-ggrepel: Update to 0.8.2. 
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
 2020-03-09 08:51:36 +01:00
Christopher Baines
af96c1e0e4
services: cuirass: Allow passing extra command line options. 
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.

* gnu/services/cuirass.scm (<cuirass-configuration>): Add an extra-options
field.
(cuirass-shepherd-service): Pass the extra options to the shepherd servvices.
* doc/guix.texi (Continuous Integration): Document it.
 2020-03-08 23:46:11 +00:00
Christopher Baines
d8ab68b929
services: guix-data-service: Allow passing extra options. 
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.

* gnu/services/guix.scm (<guix-data-service-configuration>): Add extra-options
and extra-process-jobs-options to the record type.
(guix-data-service-shepherd-services): Handle these new configuration record
fields.
* doc/guix.texi (Guix Data Service): Document these new options.
 2020-03-08 23:35:03 +00:00
Christopher Baines
67d21e2b08
gnu: guix-data-service: Update to 0.0.1-18.18eb9df. 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df.
(inputs, native-inputs): Switch to using the Guile 3 package variants where
applicable.
 2020-03-08 23:35:00 +00:00
Jakub Kądziołka
94d57ba339
gnu: python-virtualenv: Update to 20.0.8. 
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8.
  [arguments]: Remove the now-redundant 'disable-failing-test phase.
  [native-inputs]: Add python-setuptools and python-setuptools-scm.
  [inputs]: Add python-{appdirs, distlib, filelock, six,
  importlib-metadata}.
 2020-03-09 00:20:49 +01:00
Jakub Kądziołka
6e79208954
gnu: python-xyz: Add python-filelock. 
* gnu/packages/python-xyz.scm (python-filelock): New variable.
 2020-03-09 00:20:47 +01:00
Jakub Kądziołka
f2a6483084
gnu: python-xyz: Add python-distlib. 
* gnu/packages/python-xyz.scm (python-distlib): New variable.
 2020-03-09 00:20:46 +01:00
Ricardo Wurmus
830eac9c27
gnu: ngless: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
 2020-03-08 23:37:09 +01:00
Ricardo Wurmus
3f68f76eaf
gnu: Add jack-select. 
* gnu/packages/music.scm (jack-select): New variable.
 2020-03-08 23:13:11 +01:00
Ricardo Wurmus
46a864e7c1
gnu: taxtastic: Update to 0.8.11. 
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11.
[source]: Fetch from Github.
[arguments]: Build with default Python; add phases 'prepare-directory,
'python37-compatibility, and update 'check phase.
[propagated-inputs]: Replace Python 2 variants with Python 3 variants.
 2020-03-08 22:50:16 +01:00
Ludovic Courtès
d6d0e10b3d
gnu: guile-next: Revert to 3.0.0. 
Guile 3.0.1 segfaults while building guix-system-tests.drv on
and "guile3.0-guix" on x86_64-linux.

* gnu/packages/guile.scm (guile-next): Revert to 3.0.0.
(guile-3.0):
 2020-03-08 22:15:54 +01:00
Roel Janssen
3d33ca27b2
gnu: Add perl-config-inifiles. 
* gnu/packages/perl.scm (perl-config-inifiles): New variable.
 2020-03-08 21:50:44 +01:00
Roel Janssen
d0ca79e53d
gnu: Add perl-attribute-util. 
* gnu/packages/perl.scm (perl-attribute-util): New variable.
 2020-03-08 21:50:32 +01:00
Efraim Flashner
30acf2f959
gnu: Add font-opendyslexic. 
* gnu/packages/fonts.scm (font-opendyslexic): New variable.
(font-open-dyslexic): Mark as deprecated package.
 2020-03-08 22:42:33 +02:00
Ludovic Courtès
e5059c95aa
gnu: beep: Remove dependency on GCC 8. 
* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
 2020-03-08 21:21:57 +01:00
Vincent Legoll
1d91680c84
gnu: beep: Update to 1.4.9. 
* gnu/packages/terminals.scm (beep): Update to 1.4.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Jack Hill
f6713b55a1
services: certbot: Add server option. 
* gnu/services/certbot.scm (certbot-configuration): Add server option.
(certbot-command): Use server option.
(certbot-actication): Use server option.
(certbot-nginx-server-configurations): Use server option.
* doc/guix.texi (Certificate Services): Document server option.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Brice Waegeneire
9ef37e81d6
system: Export 'operating-system' missing fields. 
* gnu/system.scm: Export 'operating-system-firmware',
'operating-system-keyboard-layout',
'operating-system-name-service-switch', 'operating-system-pam-services',
'operating-system-setuid-programs', 'operating-system-skeletons',
'operating-system-sudoers-file', 'operating-system-swap-devices'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Ludovic Courtès
1a30351bf3
gnu: guile-next: Update to 3.0.1. 
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1.  Use "mirror://" URL.
 2020-03-08 21:21:57 +01:00
Ricardo Wurmus
c32897b6e4
gnu: r-robust: Update to 0.5-0.0. 
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus
7b2acf1508
gnu: r-rapidjsonr: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus
dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
 2020-03-08 16:02:04 +01:00
Hartmut Goebel
6434f9b634
gnu: Reword and extend descriptions for some KDE packages. 
* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
  kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
  kontactinterface, kpimtextedit)[description]: Reword and extend.
  (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
  (kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
 2020-03-08 14:06:00 +01:00
Martin Becze
1eb3b2b666
gnu: Add emacs-org-journal. 
* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
 2020-03-08 11:19:16 +01:00
Roel Janssen
e2ca10a46f
gnu: python-umap-learn: Fix build. 
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
  run the test suite.
 2020-03-08 10:20:22 +01:00
Maxim Cournoyer
5fdc5b2d57
services: nfs: Run rpc.mountd in foreground. 
Fixes <https://bugs.gnu.org/39708>.

Shepherd doesn't keep track of processes that fork themselves and would
disable the process after restarting it a couple times.

* gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the
'--foreground' option.
 2020-03-08 00:26:02 -05:00
Leo Famulari
be3908fa14
gnu: QEMU: Fix CVE-2020-8608. 
* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
 2020-03-07 16:37:25 -05:00
Lars-Dominik Braun
83ac7cb42b
gnu: brotli: Remove package 
Same package is provided by google-brotli.

* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Lars-Dominik Braun
d9476a3700
gnu: woff2: Update to 1.0.2 
* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake
* gnu/packages/patches/woff2-libbrotli.patch: Remove
* gnu/local.mk (dist_patch_DATA): Remove patch

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Vincent Legoll
74ff08e6b8
gnu: ccache: Fix indentation 
* gnu/packages/ccache.scm (ccache): Fix indentation

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Vincent Legoll
9eb456b8c7
gnu: ccache: Update to 3.7.7. 
gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage
to ccache.dev, get source code from github, remove fortran 77 from
description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Ludovic Courtès
24a4a635fd
gnu: eudev: Add variant with corrected Btrfs rules. 
Discussed at <https://bugs.gnu.org/39926>.

* gnu/packages/linux.scm (eudev/btrfs-fix): New variable.
* gnu/services/base.scm (<udev-configuration>)[udev]: Default to it.
(udev-service): Likewise for #:udev.
 2020-03-07 22:30:00 +01:00
Ludovic Courtès
8ab060b68b
gnu: guile: Add 2.2.7. 
* gnu/packages/guile.scm (guile-2.2.7): New variable.
(guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7.
* gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7.
* gnu/packages/patches/guile-finalization-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-07 22:29:44 +01:00
Nicolas Goaziou
2519e4cba8
gnu: emacs-xr: Update to 1.17. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17.
 2020-03-07 21:42:45 +01:00
Nicolas Goaziou
f61b980f5d
gnu: emacs-relint: Update to 1.15. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15.
 2020-03-07 21:41:06 +01:00
Ricardo Wurmus
1c9e3e9f36
gnu: r-dplyr: Update to 0.8.5. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:55 +01:00
Ricardo Wurmus
667f799641
gnu: r-survival: Update to 3.1-11. 
* gnu/packages/statistics.scm (r-survival): Update to 3.1-11.
 2020-03-07 20:03:43 +01:00
Ricardo Wurmus
d8545835bd
gnu: r-lifecycle: Update to 0.2.0. 
* gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:32 +01:00
Ricardo Wurmus
a97c648c61
gnu: r-covr: Update to 3.5.0. 
* gnu/packages/cran.scm (r-covr): Update to 3.5.0.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:21 +01:00
Ricardo Wurmus
4882fcd292
gnu: r-pscl: Update to 1.5.5. 
* gnu/packages/cran.scm (r-pscl): Update to 1.5.5.
 2020-03-07 20:03:11 +01:00
Ricardo Wurmus
15d3ac75ce
gnu: r-mosaic: Add r-knitr. 
* gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:52 +01:00
Ricardo Wurmus
c68c7e2fbf
gnu: r-insight: Update to 0.8.2. 
* gnu/packages/cran.scm (r-insight): Update to 0.8.2.
[native-inputs]: Add r-knitr.
 2020-03-07 20:02:35 +01:00
Ricardo Wurmus
491ce4f083
gnu: r-heatmaply: Add r-knitr. 
* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:14 +01:00
Ricardo Wurmus
d56553edc3
gnu: r-methylkit: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr.
 2020-03-07 19:42:34 +01:00
Ricardo Wurmus
06fc1882f2
gnu: r-ggrepel: Add r-knitr. 
* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr.
 2020-03-07 19:38:31 +01:00
Ricardo Wurmus
67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
bf3722f9db
gnu: r-depecher: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
a2512e436b
gnu: r-xcms: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
f0aaa4482a
gnu: r-yamss: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
56bf00b94e
gnu: r-viridis: Add r-knitr. 
* gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Ricardo Wurmus
3b7c644569
gnu: r-vsn: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-vsn)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Michael Rohleder
9eed0a74f9
fd: Install bash completion properly. 
* gnu/packages/rust-apps.scm (fd)[arguments]: Replace
  the dash in "bash-completion.d" with an underscore.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 18:32:27 +01:00
Robert Smith
880a316591
gnu: anki: Fix mpv audio playback 
* gnu/packages/patches/anki-mpv-args.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/education.scm (anki): Adjust accordingly, wrap anki's
  PATH to include mpv executable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 17:29:34 +01:00
Pierre Neidhardt
262d6ed465
gnu: next: Fix build with SBCL 2.0.2. 
* gnu/packages/web-browsers.scm (next)[arguments]: Fix lambda-list type error
  on SBCL 2.0.2.
 2020-03-07 17:12:35 +01:00
Tobias Geerinckx-Rice
322ea25c56
gnu: s6-rc: Update to 0.5.1.2. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
072102f651
gnu: s6-portable-utils: Update to 2.2.2.2. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.2.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
82853fbf8c
gnu: s6-networking: Update to 2.3.1.2. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
5cecf3f4e2
gnu: s6-linux-utils: Update to 2.5.1.2. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
1d57075049
gnu: scm: Update to 5f3. 
* gnu/packages/scheme.scm (scm): Update to 5f3.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
db34ab7350
gnu: ntp: Update to 4.2.8p14 [fixes Sec 3610, Sec 3596, Sec 3592]. 
https://support.ntp.org/bin/view/Main/SecurityNotice#Recent_Vulnerabilities

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p14.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
e4a9f135f7
gnu: ntp: Use HTTPS in metadata URIs 
* gnu/packages/ntp.scm (ntp)[home-page, license]: Use HTTPS.
 2020-03-07 16:04:20 +01:00
Vincent Legoll
e7ba60ddce
gnu: unbound: Update to 1.10.0. 
* gnu/packages/dns.scm (unbound): Update to 1.10.0.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 14:51:37 +01:00
Vincent Legoll
4c8b874f95
gnu: ppp: Update to 2.4.8-1.8d45443 [fixes CVE-2020-8597]. 
* gnu/packages/samba.scm (ppp): Update to 2.4.8-1.8d45443.
Use GIT-FETCH and GIT-FILE-NAME.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-03-07 14:27:06 +01:00
Tobias Geerinckx-Rice
4f236f84a9
gnu: Use HTTPS for commons.apache.org home pages. 
* gnu/packages/java.scm (java-commons-io, java-commons-logging-minimal)
(java-commons-math3, java-commons-jxpath, java-commons-daemon)
(java-commons-net, java-commons-vfs, java-commons-beanutils)
(java-commons-lang, java-commons-lang3)[home-page]:Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
c82ddf3360
gnu: java-joda-convert: Use HTTPS home page. 
* gnu/packages/java.scm (java-joda-convert)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
4d1ddb5156
gnu: java-log4j-1.2-api: Use HTTPS home page. 
* gnu/packages/java.scm (java-log4j-1.2-api)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
c901060547
gnu: java-testng: Use HTTPS home page. 
* gnu/packages/java.scm (java-testng)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
b93a0c1e6d
gnu: java-junit: Use HTTPS home page. 
* gnu/packages/java.scm (java-junit)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
a809d63252
gnu: java-openchart2: Use HTTPS home page. 
* gnu/packages/java.scm (java-openchart2)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
a15b45290d
gnu: raincat: Update home page. 
* gnu/packages/haskell-apps.scm (raincat)[home-page]: Update.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
f23365fa2c
gnu: instantmusic: Update home page. 
* gnu/packages/music.scm (instantmusic)[home-page]: Update.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
5969598149
gnu: openblas: Use HTTPS home page. 
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
14a5146f3a
gnu: python-execnet: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-execnet)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
cc31d17263
gnu: emacs-ffap-rfc-space: Use HTTPS home page. 
* gnu/packages/emacs-xyz.scm (emacs-ffap-rfc-space)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
6a0d1bd390
gnu: librecad: Use HTTPS home page. 
* gnu/packages/engineering.scm (librecad)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
c0dc417909
gnu: spice: Update to 0.14.3. 
* gnu/packages/spice.scm (spice): Update to 0.14.3.
[source]: Remove obsolete patch.
* gnu/packages/patches/spice-fix-test-armhf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
beecf815db
gnu: xfce4-weather-plugin: Update to 0.10.1. 
* gnu/packages/xfce.scm (xfce4-weather-plugin): Update to 0.10.1.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
3a5557a4d2
gnu: xfce4-clipman-plugin: Update to 1.4.4. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin): Update to 1.4.4.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
0bbf14ce93
gnu: xfce4-clipman-plugin: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin)[source]: Hard-code NAME.
 2020-03-07 12:48:17 +01:00
Pierre Neidhardt
ece22a25b6
gnu: fmt: Switch back to url-fetch. 
* gnu/packages/pretty-print.scm (fmt)[source]: Use url-fetch instead of
  git-fetch since upstream uploads releases.  Both approaches produce the
  same package, but git-fetch requires more bandwidth.
 2020-03-07 12:37:14 +01:00
Pierre Neidhardt
0bc557fd70
gnu: cl-dbus: Remove unneeded inputs. 
* gnu/packages/lisp-xyz.scm (cl-dbus)[propagated-inputs]: Remove iolib
  subpackages now that iolib properly references them.
 2020-03-07 11:30:11 +01:00
Pierre Neidhardt
af5c4efff6
gnu: sbcl-iolib: Fix build to refer to its subpackages properly. 
* gnu/packages/lisp-xyz.scm (sbcl-iolib): Inherit from its subpackages instead
  of the other way around, so that they are automatically referenced in the
  generated .asd.
 2020-03-07 11:28:32 +01:00
Vagrant Cascadian
5fb3c00256
gnu: go-golang.org-x-sync-errgroup: Fix spelling of "cancellation". 
* gnu/packages/golang (go-golang.org-x-sync-errgroup)[synopsis]: Fix typo.
 2020-03-06 20:13:30 -08:00
Vagrant Cascadian
52c733124a
gnu: rust-named-pipe-0.4: Fix spelling of "asynchronous" 
* gnu/packages/crates-io (rust-named-pipe-0.4)[synopsis]: Fix typo.
  [description]: Fix typo.
 2020-03-06 20:13:28 -08:00
Vagrant Cascadian
92f4583208
gnu: r-d3network: Fix typo "This package". 
* gnu/packages/cran (r-d3network)[description]: Fix typo.
 2020-03-06 20:13:25 -08:00
Vagrant Cascadian
5b309c6242
gnu: ksystemlog: Fix spelling of "occurring". 
* gnu/packages/kde-sytemtools (ksystemlog)[description]: Fix typo.
 2020-03-06 20:13:23 -08:00
Vagrant Cascadian
adca9882be
gnu: unicode-cldr-common: Fix spelling of "information". 
* gnu/packages/unicode (unicode-cldr-common)[description]: Fix typo.
 2020-03-06 20:13:19 -08:00
Vagrant Cascadian
374540ff65
gnu: sdl-pango: Rename patch to fix guix lint warning about patch filename size. 
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapToSurface.patch:
  Rename to ...
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch:
  ... this.
* gnu/local.mk: Update accordingly.
* gnu/packages/sdl.scm: Update accordingly.
 2020-03-06 17:34:00 -08:00
Vagrant Cascadian
789c02478a
gnu: akonadi: Rename patch to fix guix lint warning about patch filename size. 
* gnu/packages/patches/akonadi-Revert-Make-installation-properly-relocatabl.patch:
  Rename to ...
* gnu/packages/patches/akonadi-Revert-Make-installation-properly-relo.patch:
  ... this.
* gnu/packages/kde-pim (akonadi) Update accordingly.
* gnu/local.mk: Update accordingly.
 2020-03-06 17:33:56 -08:00
Tobias Geerinckx-Rice
b2ce10e3a9
gnu: yasm: Use HTTPS home page. 
* gnu/packages/assembly.scm (yasm)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
a4fdde47cc
gnu: jq: Use HTTPS home page. 
* gnu/packages/web.scm (jq)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
c61bfa08ed
gnu: xerces-c: Use HTTPS home page. 
* gnu/packages/xml.scm (xerces-c)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
898dc4947f
gnu: ytalk: Use HTTPS home page. 
* gnu/packages/messaging.scm (ytalk)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
1d7be5938b
gnu: re2c: Use HTTPS home page. 
* gnu/packages/re2c.scm (re2c)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
fc10386909
gnu: zimg: Update to 2.9.3. 
* gnu/packages/image.scm (zimg): Update to 2.9.3.
 2020-03-07 01:41:24 +01:00
Tobias Geerinckx-Rice
290fe81ddc
gnu: bluefish: Update to 2.2.11. 
* gnu/packages/gnome.scm (bluefish): Update to 2.2.11.
[inputs]: Replace python-2 with python-wrapper.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
99aa7a2d6f
gnu: bluefish: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (bluefish)[source]: Hard-code NAME.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
eda580c079
gnu: rhythmbox: Update to 3.4.4. 
* gnu/packages/gnome.scm (rhythmbox): Update to 3.4.4.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
2588693df1
gnu: rhythmbox: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (rhythmbox)[source]: Hard-code NAME.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
d748843312
gnu: knot: Update to 2.9.3. 
* gnu/packages/dns.scm (knot): Update to 2.9.3.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
ed2d015d29
gnu: hplip: Update to 3.20.2. 
* gnu/packages/cups.scm (hplip): Update to 3.20.2.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
64df1416c2
gnu: gkrellm: Update to 2.3.11. 
* gnu/packages/gkrellm.scm (gkrellm): Update to 2.3.11.
 2020-03-07 01:41:23 +01:00
Kei Kebreau
1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
 2020-03-06 15:04:34 -05:00
Mark H Weaver
c2f41cb3e8
gnu: linux-libre: Update to 5.4.24. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.24.
(linux-libre-5.4-pristine-source): Update hash.
 2020-03-06 14:20:30 -05:00
Mark H Weaver
5d01cc3673
gnu: linux-libre@4.19: Update to 4.19.108. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.108.
(linux-libre-4.19-pristine-source): Update hash.
 2020-03-06 14:19:34 -05:00
Marius Bakke
a009a3eead
gnu: ungoogled-chromium: Increase max-silent-time. 
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Add
'max-silent-time'.
 2020-03-06 18:42:36 +01:00
Marius Bakke
a125397a4b
gnu: mercurial: Update to 5.3.1. 
* gnu/packages/version-control.scm (mercurial): Update to 5.3.1.
[native-inputs]: Add WHICH.
 2020-03-06 18:42:36 +01:00
Vagrant Cascadian
87bf568022
Do not record store file name in cpp.scm. 
* gnu/packages/cpp.scm (abseil-cpp): Replace full store file name with '...'
 2020-03-06 08:24:45 -08:00
Tobias Geerinckx-Rice
1ab58a3d90
gnu: carla: Fix start-up. 
This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942>,
properly.

* gnu/packages/audio.scm (carla)[arguments]: Add ‘wrap-executables’ phase.
[inputs]: Add guile-2.2.
 2020-03-06 16:29:16 +01:00
Tobias Geerinckx-Rice
366c2c8f48
gnu: fmt: Fix home page. 
* gnu/packages/pretty-print.scm (fmt)[home-page]: Update.
 2020-03-06 16:23:49 +01:00
Tobias Geerinckx-Rice
522ec708bc
gnu: Order module imports in (gnu packages audio). 
* gnu/packages/audio.scm: Order module imports alphabetically.
 2020-03-06 16:23:49 +01:00
Tobias Geerinckx-Rice
5424e680b8
gnu: carla: Partially fix start-up. 
This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942> but
carla still fails to start.

Reported by Nathan Dehnel <ncdehnel@gmail.com>.

* gnu/packages/audio.scm (carla)[arguments]: Add ‘make-carla-executable’ phase.
 2020-03-06 15:02:33 +01:00
Tobias Geerinckx-Rice
462ca0bbb7
gnu: dovecot: Update to 2.3.10. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.10.
 2020-03-06 13:01:29 +01:00
Pierre Neidhardt
59d4c8c2bf
gnu: Add gnome-boxes. 
* gnu/packages/gnome.scm (gnome-boxes): New variable.
 2020-03-06 12:46:26 +01:00
Pierre Neidhardt
852fa6050e
gnu: tracker-miners: Update to 2.3.2. 
* gnu/packages/gnome.scm (tracker-miners): Update to 2.3.2.
 2020-03-06 12:46:26 +01:00
Pierre Neidhardt
63db190a52
gnu: tracker: Update to 2.3.2. 
* gnu/packages/gnome.scm (tracker): Update to 2.3.2.
[arguments]: Fix tests properly.
[native-inputs]: Remove unneeded native-inputs.
[inputs]: Remove unneeded inputs.
[description]: Replace unclear description with more down to earth use cases.
[license]: Replace lgpl2.0+ with bsd-3 to reflect update.
 2020-03-06 12:46:26 +01:00
Pierre Neidhardt
a9838ee00a
gnu: libvirt-glib: Update to 3.0.0. 
* gnu/packages/virtualization.scm (libvirt-glib): Update to 3.0.0.
 2020-03-06 12:46:26 +01:00
Marius Bakke
7154f5ef4b
gnu: python-pygit2: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.1.0.
[propagated-inputs]: Remove PYTHON-SIX and PYTHON-TOX.  Add PYTHON-CACHED-PROPERTY.
(python2-pygit2): Remove variable (Python 2 is no longer supported).
 2020-03-06 12:31:08 +01:00
Marius Bakke
5358950259
gnu: gitg: Remove redundant input. 
* gnu/packages/gnome.scm (gitg)[inputs]: Remove LIBGIT2.
 2020-03-06 12:31:07 +01:00
Marius Bakke
8c6aae4636
gnu: libgit2-glib: Adjust inputs. 
* gnu/packages/gnome.scm (libgit2-glib)[native-inputs]: Move LIBSSH2 ...
[inputs]: ... here.  Move LIBGIT2 ...
[propagated-inputs]: ... here.  New field.
 2020-03-06 12:31:07 +01:00
Marius Bakke
6448c2e156
gnu: libgit2-glib: Update to 0.99.0.1. 
* gnu/packages/gnome.scm (libgit2-glib): Update to 0.99.0.1.
[native-inputs]: Remove INTLTOOL.
 2020-03-06 12:31:07 +01:00
Ricardo Wurmus
dd386dd74f
gnu: r-modeltools: Update to 0.2-23. 
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-23.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
87aa4d6245
gnu: r-ggplot2: Update to 3.3.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.0.
[propagated-inputs]: Remove r-lazyeval, r-reshape2, and r-viridislite; add
r-glue and r-isoband.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
bafedbc362
gnu: Add r-isoband. 
* gnu/packages/cran.scm (r-isoband): New variable.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
858d5d7037
gnu: r-bookdown: Update to 0.18. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.18.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
099adcf81f
gnu: r-fs: Update to 1.3.2. 
* gnu/packages/cran.scm (r-fs): Update to 1.3.2.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
36488596b4
gnu: r-flextable: Update to 0.5.9. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.9.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
be01767cb9
gnu: r-lava: Update to 1.6.7. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.7.
 2020-03-06 12:15:50 +01:00
Roel Janssen
83a483aac7
gnu: Update python-scikit-learn to 0.22.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.22.1;
  Add python-joblib to native-inputs to run the test suite.
 2020-03-06 10:45:51 +01:00
Pierre Neidhardt
6d26ee3b67
gnu: Add soci. 
* gnu/packages/databases.scm (soci): New variable.
 2020-03-06 10:20:55 +01:00
Pierre Neidhardt
8be782c713
gnu: fmt: Update to 6.1.2. 
* gnu/packages/pretty-print.scm (fmt): Update to 6.1.2.
 2020-03-06 10:15:19 +01:00
Pierre Neidhardt
744f445c92
gnu: fmt: Use HTTPS and git-fetch. 
* gnu/packages/pretty-print.scm (fmt)[source]: Use git-fetch.
[home-page]: Use HTTPS.
 2020-03-06 10:15:19 +01:00
Ricardo Wurmus
fecd32501f
gnu: python-aiohttp: Update to 3.6.2. 
* gnu/packages/python-web.scm (python-aiohttp): Update to 3.6.2.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
858e642e4c
gnu: python-scanpy: Update to 1.4.5.1. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1.
[source]: Fetch from pypi.
[propagated-inputs]: Add python-legacy-api-wrap, python-packaging,
python-patsy, and python-umap-learn.
[native-inputs]: Add python-setuptools-scm.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
053ab825be
gnu: Add python-legacy-api-wrap. 
* gnu/packages/python-xyz.scm (python-legacy-api-wrap): New variable.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
2ceff35f07
gnu: Add python-get-version. 
* gnu/packages/python-xyz.scm (python-get-version): New variable.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
cc2c2850ce
gnu: Add python-pytest-black. 
* gnu/packages/python-xyz.scm (python-pytest-black): New variable.
 2020-03-06 09:16:48 +01:00