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797 Commits

Author SHA1 Message Date
Nicolas Goaziou
4b01930f54
gnu: nauty: Update to 2.7r1. 
* gnu/packages/maths.scm (nauty): Update to 2.7r1.
[arguments]: Prevent using "-march-native".  Install new executable.
 2020-05-27 17:05:32 +02:00
Kei Kebreau
1bbf7e137d
gnu: wxmaxima: Update to 20.04.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.04.0.
 2020-05-25 18:09:46 -04:00
Ekaitz Zarraga
9e91983055
gnu: qhull: Update to 2019.1 
* gnu/packages/maths.scm (qhull): update to 2019.1

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-05-25 23:00:30 +02:00
Efraim Flashner
f0a9cb9cf0
gnu: gsl: Disable failing tests on powerpc. 
* gnu/packages/maths.scm (gsl)[arguments]: Skip the same set of tests on
powerpc as skipped on aarch64.
 2020-05-17 20:23:17 +03:00
Tobias Geerinckx-Rice
0fe654ebcd
gnu: z3: Update to 4.8.8. 
* gnu/packages/maths.scm (z3): Update to 4.8.8.
 2020-05-16 15:05:05 +02:00
nikita
3c986a7dc2
mailmap: Update entries for Nikita. 
* .mailmap: change email and name for Nikita.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm,
gnu/packages/check.scm, gnu/packages/cinnamon.scm,
gnu/packages/compression.scm, gnu/packages/crypto.scm,
gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm,
gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile-xyz.scm,
gnu/packages/haskell-apps.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell-xyz.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp-xyz.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-05-13 09:30:26 +03:00
Marius Bakke
1a75fc8442
gnu: glm: Update to 0.9.9.8. 
* gnu/packages/patches/glm-restore-install-target.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (glm): Update to 0.9.9.8.
[arguments]: New field.
 2020-05-13 00:57:15 +02:00
Ludovic Courtès
ba40ce5b2c
gnu: flann: Update to 1.9.1. 
* gnu/packages/maths.scm (flann): Update to 1.9.1.
[source]: Use 'git-fetch'.
[home-page]: Change to github.com.
 2020-05-10 16:08:37 +02:00
Ludovic Courtès
f8bb53caad
gnu: flann: Remove "octave" output. 
Octave support currently fails to build and is not used by any other
package in Guix.

* gnu/packages/maths.scm (flann)[outputs]: Remove "octave" output.
[inputs]: Remove OCTAVE-CLI.
[arguments]: Remove 'set-octave-directory' phase.
 2020-05-10 16:08:37 +02:00
Marius Bakke
8bf8cd9b85
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/backup.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/guile.scm
	gnu/packages/lisp.scm
	gnu/packages/openldap.scm
	gnu/packages/package-management.scm
	gnu/packages/web.scm
	gnu/packages/xorg.scm
 2020-04-30 23:47:49 +02:00
Ricardo Wurmus
0b2c883828
gnu: Add hdf5-blosc. 
* gnu/packages/maths.scm (hdf5-blosc): New variable.
 2020-04-28 12:23:28 +02:00
Marius Bakke
030f6f489f
Merge branch 'master' into core-updates 
Conflicts:
	etc/news.scm
	gnu/local.mk
	gnu/packages/bootloaders.scm
	gnu/packages/linphone.scm
	gnu/packages/linux.scm
	gnu/packages/tls.scm
	gnu/system.scm
 2020-04-23 13:33:09 +02:00
Felix Gruber
6ca2d7dae0
gnu: maths: dune-*: Update to version 2.7 
* gnu/packages/maths.scm (dune-*): Update to version 2.7.
(dune-uggrid)[source] Download from Git, as no release tarball for
version 2.7 exists.
(dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no
tags for version 2.7 exist (yet?).
(dune-istl)[source](patches) Add patch required to build version 2.7
without openmpi.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-22 19:23:58 +02:00
R Veera Kumar
9b3c231e3c
gnu: libqalculate: Fix libcurl gnutls CA cert bundle file. 
* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (libqalculate)[source]: Use it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-04-20 20:05:09 +02:00
Marius Bakke
109bf6a0e7
gnu: dune-localfunctions: Fix build failure. 
* gnu/packages/maths.scm (dune-localfunctions)[arguments]: Add phase
'hide-gfortran'.
 2020-04-14 22:33:01 +02:00
Marius Bakke
f7cbf403ef
gnu: dune-istl: Fix build failure. 
* gnu/packages/maths.scm (dune-istl)[arguments]: Add phase 'hide-gfortran'.
 2020-04-14 22:33:01 +02:00
Marius Bakke
fc58cb5bd2
Merge branch 'master' into core-updates 2020-04-13 20:26:21 +02:00
Vagrant Cascadian
48b0d9c071
gnu: dune-subgrid: Fix grammar of "allows to mark" to "marks". 
* gnu/packages/maths (dune-subgrid): Fix grammar.
 2020-04-12 13:34:56 -07:00
Vagrant Cascadian
67e2e1718c
gnu: libqalculate: Fix spelling of "uncertainty". 
* gnu/packages/maths (libqalculate): Fix typo.
 2020-04-12 12:03:37 -07:00
Marius Bakke
2778302399
Merge branch 'master' into core-updates 
Conflicts:
	etc/news.scm
	gnu/local.mk
	gnu/packages/check.scm
	gnu/packages/cross-base.scm
	gnu/packages/gimp.scm
	gnu/packages/java.scm
	gnu/packages/mail.scm
	gnu/packages/sdl.scm
	gnu/packages/texinfo.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
 2020-04-08 13:00:50 +02:00
Nicolò Balzarotti
b60e2d480a
gnu: Add dsfmt. 
* gnu/packages/maths.scm (dsfmt): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-07 17:31:55 +03:00
Marius Bakke
a533c5a183
gnu: octave-cli: Fix build. 
* gnu/packages/maths.scm (octave-cli)[inputs]: Add LIBJPEG-TURBO.
[arguments]: Add "--enable-link-all-dependencies" in #:configure-flags.
 2020-04-05 22:45:15 +02:00
Vincent Legoll
525e83ec83
gnu: scotch: Make some inputs native. 
* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here...
[native-inputs]: ...to this new field.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-04-04 20:19:03 +02:00
Marius Bakke
0ad05c15e3
gnu: GSL: Remove unnecessary (%current-system) call. 
* gnu/packages/maths.scm (gsl)[arguments]: Use the let-bound SYSTEM variable
instead of %CURRENT-SYSTEM.
 2020-04-03 18:32:56 +02:00
R Veera Kumar
72c71d2497
gnu: Add qalculate-gtk. 
* gnu/packages/maths.scm (qalculate-gtk): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-03 16:26:38 +02:00
R Veera Kumar
70c98efaf6
gnu: Add libqalculate. 
* gnu/packages/maths.scm (libqalculate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-03 16:26:38 +02:00
Marius Bakke
c745b6f62c
gnu: GSL: Disable failing tests on i686-linux and aarch64-linux. 
This follows up commit 7ad3c81240, which enabled
tests that were previously disabled on i686, and takes into account new tests
with similar issues.  While at it, selectively disable tests on aarch64
instead of disabling all tests.

* gnu/packages/maths.scm (gsl)[arguments]: On i686 and aarch64, add #:phases.
 2020-04-03 15:53:10 +02:00
Marius Bakke
ae0badf5bb
Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/admin.scm
	gnu/packages/commencement.scm
	gnu/packages/guile.scm
	gnu/packages/linux.scm
	gnu/packages/package-management.scm
	gnu/packages/pulseaudio.scm
	gnu/packages/web.scm
 2020-03-30 12:17:33 +02:00
Jakub Kądziołka
8b87d095b3
gnu: z3: Fix build determinism. 
* gnu/packages/maths.scm (z3)[arguments]: Add a phase to set
  PYTHONHASHSEED=0.
 2020-03-29 20:35:33 +02:00
Tobias Geerinckx-Rice
53b9df20c1
gnu: Remove more packages deprecated for over almost a year. 
* gnu/packages/games.scm (armagetron-advanced)
(cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts)
(the-battle-for-wesnoth, the-battle-for-wesnoth-server)
(project-starfighter, kiki-the-nano-bot, fish-fillets-ng)
(dungeon-crawl-stone-soup): Let's forget this ever happened.
* gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name)
(magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb)
(ert-runner, groovy-emacs-modes): Remove variable.
* gnu/packages/engineering.scm (emacs-emms-player-simple-mpv)
(emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise.
* gnu/packages/finance.scm (monero-core): Likewise.
* gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles)
(tales-of-maj-eyal, battle-tanks, the-legend-of-edgar)
(gnome-tweak-tool): Likewise.
* gnu/packages/gnuzilla.scm (conkeror): Likewise.
* gnu/packages/guile-xyz.scm (mcron2): Likewise.
* gnu/packages/image.scm (pngcrunch): Likewise.
* gnu/packages/linux.scm (eudev-with-hwdb): Likewise.
* gnu/packages/maths.scm (qtoctave): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Likewise.
* gnu/packages/php.scm (php-with-bcmath): Likewise.
* gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next):
Likewise.
* gnu/packages/video.scm (livestreamer): Likewise.
* gnu/packages/virtualization.scm (lookingglass): Likewise.
* gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
(newsboat)[description]: Remove historical footnote.
 2020-03-29 18:40:56 +02:00
Amin Bandali
c2cf286c62
Update email address and Savannah handle for Amin Bandali. 
* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm,
gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address.
* build-aux/git-authenticate.scm: Update my Savannah handle.
 2020-03-28 16:30:07 -04:00
Nicolas Goaziou
255fb17b25
gnu: armadillo: Fix typo in description. 
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
 2020-03-28 21:27:33 +01:00
Marius Bakke
18af687037
Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/icu4c.scm
	gnu/packages/man.scm
	gnu/packages/python-xyz.scm
	guix/scripts/environment.scm
	guix/scripts/pack.scm
	guix/scripts/package.scm
	guix/scripts/pull.scm
	guix/store.scm
 2020-03-27 00:12:15 +01:00
Kei Kebreau
6607aad53c
gnu: wxmaxima: Update to 20.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1.
 2020-03-22 19:22:42 -04:00
Marius Bakke
d19b14c834
Merge branch 'master' into core-updates 2020-03-21 22:16:02 +01:00
Tobias Geerinckx-Rice
2aaa09f17d
gnu: hdf-eos2: Use HTTPS home page. 
* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS.
 2020-03-21 03:09:51 +01:00
Marius Bakke
c4d769d359
Merge branch 'master' into core-updates 2020-03-18 19:41:08 +01:00
Marius Bakke
961d2ee269
Merge branch 'master' into core-updates 2020-03-14 13:13:40 +01:00
Marius Bakke
b471337dea
gnu: suitesparse: Build with cmake-minimal. 
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
 2020-03-14 11:55:33 +01:00
Tobias Geerinckx-Rice
d3be522036
gnu: openlibm: Use HTTPS home page. 
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
 2020-03-14 22:01:40 +01:00
Felix Gruber
6ceb771657
gnu: define dune-*-openmpi packages 
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi,
dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi,
dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi,
dune-localfunctions-openmpi, dune-functions-openmpi,
dune-pdelab-openmpi): New variables.
(add-openmpi-to-dune-package): New function to add openmpi to the
inputs of a dune-* package and replace all dune-* packages in its
input with the corresponding dune-*-openmpi package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-14 17:54:34 +01:00
Felix Gruber
393dc1cc0b
gnu: dune-*: remove openmpi dependency 
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency.
  [arguments]: remove code to setup openmpi for tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-14 17:54:34 +01:00
Felix Gruber
0a703c0486
gnu: dune-istl: Build with suitesparse 
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
f1f9466e33
gnu: Add dune-subgrid 
* gnu/packages/maths.scm (dune-subgrid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
07ebb75d17
gnu: Add dune-uggrid. 
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
a669f6e27b
gnu: dune-*: set up MPI for tests 
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Marius Bakke
50b99c90c8
Merge branch 'master' into core-updates 2020-03-10 20:50:02 +01:00
Tobias Geerinckx-Rice
80fafdba1c
gnu: speedcrunch: Use HTTPS home page. 
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
5969598149
gnu: openblas: Use HTTPS home page. 
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Kei Kebreau
1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
 2020-03-06 15:04:34 -05:00