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13720 Commits

Author SHA1 Message Date
Ricardo Wurmus
4aa7d592f1
gnu: Add r-mzid. 
* gnu/packages/bioinformatics.scm (r-mzid): New variable.
 2017-01-17 21:46:50 +01:00
Ricardo Wurmus
7c08afaf7b
gnu: Add r-vsn. 
* gnu/packages/bioinformatics.scm (r-vsn): New variable.
 2017-01-17 21:46:50 +01:00
Ricardo Wurmus
05c7e5fb76
gnu: Add r-affy. 
* gnu/packages/bioinformatics.scm (r-affy): New variable.
 2017-01-17 21:46:49 +01:00
Ricardo Wurmus
5c9d15055f
gnu: Add r-affyio. 
* gnu/packages/bioinformatics.scm (r-affyio): New variable.
 2017-01-17 21:46:49 +01:00
Ricardo Wurmus
71676a1f4c
gnu: Add r-mzr. 
* gnu/packages/bioinformatics.scm (r-mzr): New variable.
 2017-01-17 21:46:49 +01:00
Ricardo Wurmus
ae26217430
gnu: Add r-protgenerics. 
* gnu/packages/bioinformatics.scm (r-protgenerics): New variable.
 2017-01-17 21:46:49 +01:00
Ricardo Wurmus
0e7d058e44
gnu: Add r-maldiquant. 
* gnu/packages/bioinformatics.scm (r-maldiquant): New variable.
 2017-01-17 21:46:49 +01:00
Ricardo Wurmus
1f40e73cb5
gnu: Add r-raremetals2. 
* gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus
fb1e528ef1
gnu: Add r-seqminer. 
* gnu/packages/bioinformatics.scm (r-seqminer): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus
26a281ef27
gnu: Add r-compquadform. 
* gnu/packages/statistics.scm (r-compquadform): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus
769fc6bb18
gnu: Add ribodiff. 
* gnu/packages/bioinformatics.scm (ribodiff): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus
e84efc50d7
gnu: Add hisat2. 
* gnu/packages/bioinformatics.scm (hisat2): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus
5f764dd7ff
gnu: Add r-fivethirtyeight. 
* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
 2017-01-17 21:46:47 +01:00
Ricardo Wurmus
40effef7ca
gnu: powertabeditor: Update to 2.0.0-alpha9. 
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9.
[source]: Simplify snippet.
[arguments]: Adjust phases; remove unnecessary configure flag.
 2017-01-17 21:46:25 +01:00
Leo Famulari
46076d08ed
Revert "gnu: cups-filters: Disable mutool integration." 
This change would cause 594 packages to be rebuilt, so it was moved to
the staging branch.

This reverts commit 58a7bbc5fe.
 2017-01-17 15:13:54 -05:00
Leo Famulari
cf3768fa06
gnu: webkitgtk: Update to 2.14.3 [security fixes]. 
Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3.
 2017-01-17 14:56:13 -05:00
Tobias Geerinckx-Rice
58a7bbc5fe
gnu: cups-filters: Disable mutool integration. 
* gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’
to #:configure-flags.
[inputs]: Remove mupdf.
 2017-01-17 18:42:37 +01:00
Tobias Geerinckx-Rice
16869cecf6
gnu: libpsl: Update to 0.17.0. 
* gnu/packages/web.scm (libpsl): Update to 0.17.0.
 2017-01-17 18:42:36 +01:00
Tobias Geerinckx-Rice
cdb93e50ea
gnu: proxychains-ng: Update to 4.12. 
* gnu/packages/networking.scm (proxychains-ng): Update to 4.12.
 2017-01-17 18:42:34 +01:00
Marius Bakke
718c12786b
gnu: password-store: Install bash completions. 
* gnu/packages/password-utils.scm (password-store)[arguments]: Add
'install-shell-completions' phase.
 2017-01-17 16:18:35 +01:00
Ricardo Wurmus
c554c6bab8
gnu: gnucash: Update to 2.6.15. 
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.15.
 2017-01-17 15:07:08 +01:00
Björn Höfling
065d012511
gnu: Add proj.4. 
* gnu/packages/geo.scm (proj.4): New variable.
(gnome-maps): Use license: prefix.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-17 14:41:08 +01:00
Marius Bakke
f68647299c
gnu: xscreensaver: Update to 5.36. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36.
 2017-01-17 14:21:10 +01:00
Leo Famulari
ae6591efa5
gnu: perl-image-exiftool: Update to 10.40. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40.
[synopsis, description]: Mention more capabilities.
 2017-01-17 03:50:36 -05:00
Ricardo Wurmus
265afbdfe7
gnu: ghc-quickcheck-instances: Update to 0.3.12. 
* gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12.
[inputs]: Add ghc-scientific and ghc-vector.
 2017-01-17 03:58:19 +01:00
Leo Famulari
19083a5eee
gnu: imagemagick: Update to 6.9.7-4 [security fixes]. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4.
 2017-01-16 18:39:41 -05:00
Leo Famulari
9381a02a53
gnu: Add scrypt. 
* gnu/packages/crypto.scm (scrypt): New variable.
 2017-01-16 18:02:14 -05:00
Ricardo Wurmus
ce9701fb95
gnu: Add emacs-stripe-buffer. 
* gnu/packages/emacs.scm (emacs-stripe-buffer): New variable.
 2017-01-16 23:37:43 +01:00
Ricardo Wurmus
0b35f11d76
gnu: Add emacs-git-timemachine. 
* gnu/packages/emacs.scm (emacs-git-timemachine): New variable.
 2017-01-16 23:37:43 +01:00
Ludovic Courtès
ae21519f63
gnu: guile-sqlite3: Provide a new source URL. 
* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change.
 2017-01-16 23:27:23 +01:00
Ludovic Courtès
384344198d
file-systems: 'file-system-needed-for-boot?' is #t for parents of the store. 
Suggested by John Darrington <john@darrington.wattle.id.au>.

* gnu/system/file-systems.scm (%not-slash): New variable.
(file-prefix?): New procedure.
(file-system-needed-for-boot?): Use it to check whether FS holds the
store.
* tests/file-systems.scm ("file-system-needed-for-boot?"): New test.
* gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove
'needed-for-boot?' field for "/gnu".
 2017-01-16 23:27:23 +01:00
Ricardo Wurmus
b91cfa22e1
gnu: Add r-centipede. 
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
 2017-01-16 23:18:27 +01:00
Julien Lepiller
1fdfbadff0
gnu: Add ocaml-lwt. 
* gnu/packages/ocaml.scm (ocaml-lwt): New variable.
 2017-01-16 22:34:53 +01:00
Julien Lepiller
37f17e2a1e
gnu: Add ocaml-ssl. 
* gnu/packages/ocaml.scm (ocaml-ssl): New variable.
 2017-01-16 22:34:51 +01:00
Julien Lepiller
1342fce102
gnu: Add ocaml-react. 
* gnu/packages/ocaml.scm (ocaml-react): New variable.
 2017-01-16 22:34:48 +01:00
Julien Lepiller
0a7b43a818
gnu: Add ocaml-ppx-tools. 
* gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable.
 2017-01-16 22:34:45 +01:00
Julien Lepiller
69705efe94
gnu: Add ocaml-alcotest. 
* gnu/packages/ocaml.scm (ocaml-alcotest): New variable.
 2017-01-16 22:34:42 +01:00
Julien Lepiller
f46bceb670
gnu: Add ocaml-astring. 
* gnu/packages/ocaml.scm (ocaml-astring): New variable.
 2017-01-16 22:34:39 +01:00
Julien Lepiller
beeb2d419b
gnu: Add ocaml-fmt. 
* gnu/packages/ocaml.scm (ocaml-fmt): New variable.
 2017-01-16 22:34:36 +01:00
Julien Lepiller
8fe6b9327d
gnu: camlzip: Install both modules. 
* gnu/packages/ocaml.scm (camlzip) [arguments]: Install both zip and camlzip
modules.
 2017-01-16 22:34:30 +01:00
Thomas Danckaert
138adbbe05
gnu: Add python-autopep8. 
* gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-16 22:13:21 +01:00
Thomas Danckaert
2f4d08ee7f
gnu: kdevelop: Set more paths in wrapper script. 
* gnu/packages/kde.scm (kdevelop)[arguments]: Add more paths in
 wrap-executable: add "/share" output of kdevplatform and kcmutils to
 $XDG_DATA_DIRS; add "lib/plugins" from user profile to $QT_PLUGIN_PATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-16 22:13:21 +01:00
Thomas Danckaert
fc11b0d3b2
gnu: kdevelop: Update to 5.0.3. 
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.0.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-16 22:13:21 +01:00
Mark H Weaver
b09903619f
gnu: linux-libre: Update to 4.9.4. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.4.
 2017-01-16 05:26:33 -05:00
Mark H Weaver
8220c963e1
gnu: linux-libre@4.4: Update to 4.4.43. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.43.
 2017-01-16 05:23:04 -05:00
ng0
ad1c349db0
gnu: dwm: Add '.desktop' file. 
Fixes <https://bugs.gnu.org/25438>.

* gnu/packages/suckless.scm (dwm)[arguments]: Add
'install-xsession' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-16 11:03:46 +01:00
ng0
0d2c8f3420
gnu: dwm: Use modify-phases. 
* gnu/packages/suckless.scm (dwm): Use modify-phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-16 11:03:46 +01:00
Christopher Baines
7d8b59139a
services: Export 'service-extension' procedures. 
* gnu/services.scm: Export service-extension-target and
service-extension-compute.  This allows for greater extensiblity of services
by enabling service extensions to be wrapped.  For example, the parameters
passed to the compute function can be modified, or the return value of the
compute function can be modified.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-16 11:03:26 +01:00
Marius Bakke
4ec840917c
gnu: zathura-pdf-poppler: Update to 0.2.7. 
* gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.2.7.
 2017-01-16 10:21:46 +01:00
Marius Bakke
16a9f83fe0
gnu: zathura-djvu: Update to 0.2.6. 
* gnu/packages/pdf.scm (zathura-djvu): Update to 0.2.6.
 2017-01-16 10:20:15 +01:00