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Author SHA1 Message Date
Martin Schmidt
34cf5e06a9
gnu: nheko: Support video calls. 
* gnu/packages/messaging.scm (nheko)[inputs]: Replace GST-PLUGINS-GOOD with
GST-PLUGINS-GOOD-QT to fix video calls.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-12-13 13:42:11 +00:00
Martin Schmidt
27efd3ed3c
gnu: Add gst-plugins-good-qt. 
* gnu/packages/gstreamer.scm (gst-plugins-good-qt): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-12-13 13:42:11 +00:00
Christopher Baines
2fb187ed7c
gnu: guix-data-service: Update to 0.0.1-36.7b69611. 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-36.7b69611.
 2022-12-13 13:42:11 +00:00
Ricardo Wurmus
81841559f4
gnu: kaldi: Update to 0-1.be22248. 
* gnu/packages/machine-learning.scm (kaldi): Update to 0-1.be22248.
 2022-12-13 14:38:13 +01:00
Ricardo Wurmus
f764947dab
gnu: kaldi: Remove trailing #T from build phases. 
* gnu/packages/machine-learning.scm (kaldi)[arguments]: Remove trailing #T
from build phases.
 2022-12-13 14:38:12 +01:00
Ricardo Wurmus
c978ae3c6b
gnu: kaldi-gstreamer-server: Update to 0-3.f79e204. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to
0-3.f79e204.
 2022-12-13 14:38:12 +01:00
Ricardo Wurmus
8466aceb13
gnu: kaldi-gstreamer-server: Drop input labels. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Drop
package labels.
 2022-12-13 14:38:12 +01:00
Ricardo Wurmus
79cf84c7ab
gnu: kaldi-gstreamer-server: Remove trailing #T from build phases. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]:
Remove trailing #T from build phases.
 2022-12-13 14:38:12 +01:00
Ricardo Wurmus
01f4617b99
gnu: gst-kaldi-nnet2-online: Update to 0-3.7888ae5. 
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-3.7888ae5.
[arguments]: Do to quote list; remove trailing #T from build phases; augment
CPLUS_INCLUDE_PATH instead of replacing it.
[inputs]: Replace openfst with openfst-1.7.3.
 2022-12-13 14:38:03 +01:00
Pierre Neidhardt
417604ec25
gnu: sbcl-alloy: Update to 20221126. 
* gnu/packages/lisp-xyz.scm (sbcl-alloy): Update to 20221126.
 2022-12-13 11:18:59 +01:00
Pierre Neidhardt
706dead679
gnu: sbcl-3b-bmfont: Update to 20220327. 
* gnu/packages/lisp-xyz.scm (sbcl-3b-bmfont): Update to 20220327.
 2022-12-13 11:18:59 +01:00
Pierre Neidhardt
e7eefbf85c
gnu: Add cl-sdf. 
* gnu/packages/lisp-xyz.scm (cl-sdf, ecl-sdf, sbcl-sdf): New variables.
 2022-12-13 11:18:59 +01:00
Pierre Neidhardt
f0ebbe1598
gnu: sbcl-cl-vectors: Build all subsystems. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-vectors)[arguments]: Build cl-paths,
cl-aa and cl-aa-misc as well.
 2022-12-13 11:18:59 +01:00
Pierre Neidhardt
4f64d30b5d
gnu: Add cl-binpack. 
* gnu/packages/lisp-xyz.scm (cl-binpack, ecl-binpack, sbcl-binpack): New variables.
 2022-12-13 11:18:59 +01:00
Pierre Neidhardt
63b508e4fb
gnu: Add cl-uax-14. 
* gnu/packages/lisp-xyz.scm (cl-uax-14, ecl-uax-14, sbcl-uax-14): New variables.
 2022-12-13 11:18:59 +01:00
Pierre Neidhardt
752b65935d
gnu: Add cl-font-discovery. 
* gnu/packages/lisp-xyz.scm (cl-font-discovery, ecl-font-discovery,
sbcl-font-discovery): New variables.
 2022-12-13 11:18:59 +01:00
Pierre Neidhardt
206b97c102
gnu: Add cl-colored. 
* gnu/packages/lisp-xyz.scm (cl-colored, ecl-colored, sbcl-colored): New variables.
 2022-12-13 11:18:59 +01:00
Bruno Victal
ca735decfb
gnu: mympd: Update to 10.1.6. 
* gnu/packages/mpd.scm (mympd): Update to 10.1.6.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-13 14:17:30 +08:00
Robby Zambito
648b1605dd
gnu: gauche: Update to 0.9.12 
* gnu/packages/scheme.scm (gauche): Update to 0.9.12.
[source]: Project migrated to GitHub.
libatomic-ops is no longer in the Gauche source tree.
[arguments]: Renamed network test file.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-13 14:10:26 +08:00
Ricardo Wurmus
e84042fdd4
gnu: cnvkit: Update to 0.9.9. 
* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.9.
[build-system]: Use pyproject-build-system.
[arguments]: Relax restriction on python-joblib.
[propagated-inputs]: Add python-pomegranate and python-scikit-learn.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
1369b53d49
gnu: seqmagick: Update to 0.8.4. 
* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.4.
[build-system]: Use pyproject-build-system.
[inputs]: Add python-pygtrie.
[native-inputs]: Replace python-nose with python-pytest.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
9bf2101049
gnu: python-flasgger: Update to 0.9.5. 
* gnu/packages/python-xyz.scm (python-flasgger): Update to 0.9.5.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'prepare-check phase; disable
"test_swag" test via #:test-flags.
[native-inputs]: Add python-apispec-webframeworks and python-flask-jwt.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
8c197f990b
gnu: python-pyjwt: Update to 2.6.0. 
* gnu/packages/python-xyz.scm (python-pyjwt): Update to 2.6.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[native-inputs]: Add pytohn-coverage, python-pre-commit, python-sphinx, and
python-sphinx-rtd-theme.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
99a29b4933
gnu: python-apispec: Update to 6.0.2. 
* gnu/packages/python-xyz.scm (python-apispec): Update to 6.0.2.
[build-system]: Use pyproject-build-system.
[arguments]: Disable test through test-flags, not by replacing the 'check
phase.
[propagated-inputs]: Remove python-pyyaml; add python-packaging.
[native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy,
python-pre-commit, and python-pyyaml.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
0fcba8b01c
gnu: python-marshmallow: Update to 3.19.0. 
* gnu/packages/python-xyz.scm (python-marshmallow): Update to 3.19.0.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Remove python-dateutil and python-simplejson; add
python-packaging.
[native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy,
python-pre-commit, and python-simplejson.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
71dc990f22
gnu: python-flask-restful: Update to 0.3.9. 
* gnu/packages/python-web.scm (python-flask-restful): Update to 0.3.9.
[source]: Remove patch.
[build-system]: Use pyproject-build-system.
[arguments]: Disable "test_redirect" test; remove 'fix-imports phase.
[native-inputs]: Replace python-nose with python-pytest.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/python-flask-restful-werkzeug-compat.patch: Remove file.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
461dff2651
gnu: python-cgatcore: Update to 0.6.14. 
* gnu/packages/bioinformatics.scm (python-cgatcore): Update to 0.6.14.
[build-system]: Use pyproject-build-system.
[arguments]: Disable broken tests with #:test-flags; do not replace 'check
phase; add phase 'sqlite-compatibility.
[native-inputs]: Drop input labels.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
2f1d8fb129
gnu: python-apsw: Update to 3.40.0.0. 
* gnu/packages/databases.scm (python-apsw): Update to 3.40.0.0.
[source]: Remove obsolete patch.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-cython.
[arguments]: Move build-extensions phase before build phase.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/python-apsw-3.39.2.1-test-fix.patch: Remove file.
 2022-12-13 00:08:54 +01:00
Ricardo Wurmus
08b9e29d46
gnu: python-bokeh: Skip failing PIL test. 
The test compares base64-encoded gifs; the gifs look identical but the
base64-encoded data differs.  Since the result seems fine, disabling this PIL
test is probably okay.

* gnu/packages/python-xyz.scm (python-bokeh)[arguments]: Ignore failing
test_transform_PIL test.
 2022-12-13 00:08:13 +01:00
Ricardo Wurmus
b72df3bbb3
gnu: python-dna-features-viewer: Update to 3.1.1. 
* gnu/packages/bioinformatics.scm (python-dna-features-viewer):
Update to 3.1.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add build phase to fix a compatibility problem with biopython.
[propagated-inputs]: Add python-packaging.
 2022-12-13 00:07:23 +01:00
Ricardo Wurmus
b66b6bdf70
gnu: python-hicexplorer: Update to 3.7.2. 
* gnu/packages/bioinformatics.scm (python-hicexplorer): Update to 3.7.2.
[build-system]: Use pyproject-build-system.
[arguments]: Use gexp; remove phase "loosen-up-requirements"; add test-flags
to skip some tests; add phase "remove-dependency-on-krbalancing" to remove a
dependency on an unlicensed package; add phase "fix-references"; add phase
"run-only-low-mem-tests".
[propagated-inputs]: Remove python-configparser and python-six; add
python-biopython, python-cleanlab-1, python-fit-nbinom, python-graphviz,
python-hic2cool, python-hicmatrix, python-hyperopt, python-imbalanced-learn,
python-ipykernel, python-psutil, python-pybedtools, python-pygenometracks,
python-scikit-learn, and python-tqdm.
[native-inputs]: Add graphviz.
 2022-12-13 00:07:23 +01:00
Ricardo Wurmus
c3e330cf36
gnu: python-pygenometracks: Update to 3.5. 
* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.5.
[build-system]: Use pyproject-build-system.
[arguments]: Quote phases instead of full list of arguments; remove trailing #T
from build phase.
 2022-12-13 00:07:22 +01:00
Ricardo Wurmus
6e9518e201
gnu: python-hicmatrix: Update to 16. 
* gnu/packages/bioinformatics.scm (python-hicmatrix): Update to 16.
[build-system]: Use pyproject-build-system.
[arguments]: Shuffle the quote.
 2022-12-13 00:07:22 +01:00
Ricardo Wurmus
5167881a60
gnu: python-biopython: Update to 1.80. 
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.80.
[build-system]: Use pyproject-build-system.
[arguments]: Remove trailing #T from build phase.
 2022-12-13 00:07:22 +01:00
Ricardo Wurmus
de70f957b2
gnu: python-hyperopt: Update to 0.2.7. 
* gnu/packages/machine-learning.scm (python-hyperopt): Update to 0.2.7.
[arguments]: Adjust check phase; disable test_distribution_rvs test.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-py4j.
[native-inputs]: Remove python-ipython and python-ipyparallel.
 2022-12-13 00:07:22 +01:00
Ricardo Wurmus
3d388fe3d0
gnu: python-graphviz: Update to 0.20.1. 
* gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom "check" phase; add "prepare-check" phase.
[native-inputs]: Remove python-mock.
 2022-12-13 00:07:22 +01:00
Ricardo Wurmus
75331dc6e6
gnu: python-anndata: Use pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-anndata)[build-system]: Use
pyproject-build-system.
[arguments]: Replace custom 'build phase with 'set-version phase; remove
custom 'install phase; disable doctest via build phase 'disable-doctests and
the #:test-flags property.
[propagated-inputs]: Add python-scikit-learn.
[native-inputs]: Add python-boltons.
 2022-12-12 23:59:39 +01:00
Ricardo Wurmus
2c65106cf5
gnu: python-zarr: Update to 2.13.3. 
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.13.3.
 2022-12-12 23:59:39 +01:00
Ricardo Wurmus
8b9c9051ba
gnu: python-numcodecs: Update to 0.10.2. 
* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.10.2.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add phase 'build-extensions; remove custom 'check
phase.
[propagated-inputs]: Add python-entrypoints and python-typing-extensions-next.
 2022-12-12 23:59:39 +01:00
Ricardo Wurmus
c4bcb5db49
gnu: python-typer: Simplify by using pyproject-build-system. 
* gnu/packages/python-xyz.scm (python-typer)[build-system]: Use
pyproject-build-system.
[arguments]: Remove extra quoting; remove custom 'build phase; remove custom
'install phase; remove custom 'check phase; add 'pre-check phase.
[synopsis]: Pull onto the same line.
[description]: Reformat.
 2022-12-12 23:59:29 +01:00
jgart
1d160f41f5
gnu: Add erlang-yamerl. 
* gnu/packages/erlang.scm (erlang-yamerl): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-12-12 20:39:41 +00:00
jgart
e4fd04fb92
gnu: Add erlang-jsx. 
* gnu/packages/erlang.scm (erlang-jsx): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-12-12 20:34:57 +00:00
Christopher Baines
d5ad3dd59a
services: guix-build-coordinator: Fix service startup. 
Previously the service would keep starting more and more processes.

* gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Fix how
make-forkexec-constructor is called.
 2022-12-12 19:58:25 +00:00
Marius Bakke
c1695bcadd
gnu: re2: Update to 2022-12-01. 
* gnu/packages/regex.scm (re2): Update to 2022-12-01.
 2022-12-12 20:23:32 +01:00
Marius Bakke
2c1b488d19
tests: Add system tests for each supported kernel version. 
* gnu/tests/base.scm (%test-basic-os): Rename to ...
(test-basic-os): ... this, and turn into procedure that takes optional KERNEL
argument.
(%test-basic-os): Use that procedure.
(%test-linux-libre-5.15, %test-linux-libre-5.10, %test-linux-libre-5.4,
%test-linux-libre-4.19, %test-linux-libre-4.14, %test-linux-libre-4.9): New
tests.
 2022-12-12 20:23:32 +01:00
Marius Bakke
9fc171b62a
gnu: f2fs-tools: Remove obsolete phase. 
* gnu/packages/linux.scm (f2fs-tools)[arguments]: Remove.
(f2fs-tools-1.7)[arguments]: Add #:phases.
 2022-12-12 20:23:31 +01:00
Marius Bakke
a2c6cc4354
gnu: f2fs-tools: Update to 1.15.0. 
* gnu/packages/linux.scm (f2fs-tools): Update to 1.15.0.
(f2fs-tools/static)[arguments]: Add #:make-flags.  Remove make-static phase.
 2022-12-12 20:23:31 +01:00
Marius Bakke
e1fc45b3ea
gnu: f2fs-tools@1.7: Don't fetch autogenerated git snapshot. 
* gnu/packages/linux.scm (f2fs-tools-1.7)[source]: Switch to GIT-FETCH.
 2022-12-12 20:23:31 +01:00
Marius Bakke
61f67290b9
gnu: f2fs-tools: Don't fetch autogenerated git snapshot. 
* gnu/packages/linux.scm (f2fs-tools)[source]: Switch to GIT-FETCH.
 2022-12-12 20:23:31 +01:00
Marius Bakke
58e33da5f5
gnu: f2fs-tools: Reverse inheritance relationship. 
* gnu/packages/linux.scm (f2fs-tools): Update to 1.14.0.
[arguments]: Remove obsolete #:configure-flags and trailing #t in phase.
[inputs]: Remove labels.
(f2fs-tools-1.7): Inherit from above; add #:configure-flags.
[inputs]: Remove labels.
 2022-12-12 20:23:31 +01:00
Marius Bakke
999783b92d
gnu: ungoogled-chromium: Build with ffmpeg@4. 
This is a follow-up to commit 79564bf997.

* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Change from FFMPEG
to FFFMPEG-4.
 2022-12-12 20:23:31 +01:00
Mădălin Ionel Patrașcu
3640310d69
gnu: Add r-golem. 
* gnu/packages/cran.scm (r-golem): New variable.
 2022-12-12 19:01:21 +01:00
Mădălin Ionel Patrașcu
79ecb5f35f
gnu: Add r-attempt. 
* gnu/packages/cran.scm (r-attempt): New variable.
 2022-12-12 19:01:21 +01:00
Mădălin Ionel Patrașcu
75a9ee5b8e
gnu: Add r-anytime. 
* gnu/packages/cran.scm (r-anytime): New variable.
 2022-12-12 18:45:32 +01:00
Mădălin Ionel Patrașcu
61124bc7b0
gnu: Add r-shinycustomloader. 
* gnu/packages/cran.scm (r-shinycustomloader): New variable.
 2022-12-12 18:45:31 +01:00
Mădălin Ionel Patrașcu
ca7141234d
gnu: Add r-logging. 
* gnu/packages/cran.scm (r-logging): New variable.
 2022-12-12 18:45:31 +01:00
Mădălin Ionel Patrașcu
b9014985be
gnu: Add r-asics. 
* gnu/packages/bioconductor.scm (r-asics): New variable.
 2022-12-12 18:41:13 +01:00
Mădălin Ionel Patrașcu
061ce5500a
gnu: Add r-pepsnmr. 
* gnu/packages/bioconductor.scm (r-pepsnmr): New variable.
 2022-12-12 18:40:46 +01:00
Mădălin Ionel Patrașcu
1e5c9bb0d2
gnu: Add r-ptw. 
* gnu/packages/cran.scm (r-ptw): New variable.
 2022-12-12 18:40:11 +01:00
Mădălin Ionel Patrașcu
c2d25c7b5e
gnu: Add r-rcppde. 
* gnu/packages/cran.scm (r-rcppde): New variable.
 2022-12-12 18:39:26 +01:00
Mădălin Ionel Patrașcu
e0746ee4c4
gnu: Add r-animalcules. 
* gnu/packages/bioconductor.scm (r-animalcules): New variable.
 2022-12-12 17:30:05 +01:00
Mădălin Ionel Patrașcu
8f80c99e2b
gnu: Add r-plotroc. 
* gnu/packages/cran.scm (r-plotroc): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-12-12 17:24:07 +01:00
Mădălin Ionel Patrașcu
b6873a836c
gnu: Add r-gridsvg. 
* gnu/packages/cran.scm (r-gridsvg): New variable.
 2022-12-12 16:22:28 +01:00
Mădălin Ionel Patrașcu
5154e76a2e
gnu: Add r-gunifrac. 
* gnu/packages/cran.scm (r-gunifrac): New variable.
 2022-12-12 16:21:50 +01:00
Mădălin Ionel Patrașcu
48e6e67990
gnu: Add r-dirmult. 
* gnu/packages/cran.scm (r-dirmult): New variable.
 2022-12-12 16:20:36 +01:00
Mădălin Ionel Patrașcu
e99b3c0d25
gnu: Add r-modeest. 
* gnu/packages/cran.scm (r-modeest): New variable.
 2022-12-12 16:19:49 +01:00
Mădălin Ionel Patrașcu
7ec230fe12
gnu: Add r-fbasics. 
* gnu/packages/cran.scm (r-fbasics): New variable.
 2022-12-12 16:19:49 +01:00
Mădălin Ionel Patrașcu
3e6e0696cc
gnu: Add r-timeseries. 
* gnu/packages/cran.scm (r-timeseries): New variable.
 2022-12-12 16:19:18 +01:00
Mădălin Ionel Patrașcu
9e03e01aae
gnu: Add r-gss. 
* gnu/packages/cran.scm (r-gss): New variable.
 2022-12-12 16:18:43 +01:00
Mădălin Ionel Patrașcu
9c81ab8b39
gnu: Add r-stable. 
* gnu/packages/cran.scm (r-stable): New variable.
 2022-12-12 16:18:17 +01:00
Mădălin Ionel Patrașcu
977a15d8e8
gnu: Add r-rmutil. 
* gnu/packages/cran.scm (r-rmutil): New variable.
 2022-12-12 16:17:39 +01:00
Mădălin Ionel Patrașcu
8d2222fac6
gnu: Add r-statip. 
* gnu/packages/cran.scm (r-statip): New variable.
 2022-12-12 16:17:07 +01:00
Mădălin Ionel Patrașcu
5fb5af5658
gnu: Add r-amplican. 
* gnu/packages/bioconductor.scm (r-amplican): New variable.
 2022-12-12 15:50:28 +01:00
Mădălin Ionel Patrașcu
84392cd024
gnu: Add r-waffle. 
* gnu/packages/cran.scm (r-waffle): New variable.
 2022-12-12 15:48:37 +01:00
Mădălin Ionel Patrașcu
ec2388d6b4
gnu: Add r-clustercrit. 
* gnu/packages/cran.scm (r-clustercrit): New variable.
 2022-12-12 15:48:03 +01:00
Mădălin Ionel Patrașcu
8363719476
gnu: Add r-harshlight. 
* gnu/packages/bioconductor.scm (r-harshlight): New variable.
 2022-12-12 15:37:15 +01:00
Mădălin Ionel Patrașcu
85d5ce4901
gnu: Add r-altcdfenvs. 
* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable.
 2022-12-12 15:37:15 +01:00
Mădălin Ionel Patrașcu
97b36ca4d3
gnu: Add r-makecdfenv. 
* gnu/packages/bioconductor.scm (r-makecdfenv): New variable.
 2022-12-12 15:37:15 +01:00
Tobias Geerinckx-Rice
776632c0be
gnu: yajl: Improve description. 
* gnu/packages/web.scm (yajl)[synopsis, description]: Edit.  Mark up.
Note generator.
 2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice
2a779dc9bd
gnu: yajl: Remove trailing #t from phases. 
* gnu/packages/web.scm (yajl)[arguments]: Don't explicitly return #t from phases.
 2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice
8fe6d3e844
gnu: yajl: Drop custom ‘lib-’ prefix. 
* gnu/packages/web.scm (yajl): New variable, renamed from…
(libyajl): …this one, which is now a DEPRECATED-PACKAGE alias of yajl.
Adjust all users.
 2022-12-11 01:00:00 +01:00
Marius Bakke
b5f3a1b84e
gnu: Remove unused module import. 
* gnu/packages/version-control.scm: Don't import (guix build python-build-system).
 2022-12-12 15:12:58 +01:00
Marius Bakke
16f87d883b
services: zabbix-server: Increase Shepherd grace period. 
* gnu/services/monitoring.scm (zabbix-server-shepherd-service)[stop]: Add
 #:grace-period.
 2022-12-12 15:12:58 +01:00
Marius Bakke
79564bf997
gnu: ffmpeg: Promote version 5 to the default. 
* gnu/packages/video.scm (ffmpeg): Alias to FFMPEG-5.
(mlt-6)[inpust]: Replace "ffmpeg" with FFMPEG-4.
(transcode, libquicktime, ffmpegthumbnailer, mplayer, obs,
simplescreenrecorder, handbrake, ffms2, libopenshot, wlstream)[inputs]: Change
from FFMPEG to FFMPEG-4.
* gnu/packages/arcan.scm (arcan)[inputs]: Likewise.
* gnu/packages/astronomy.scm (stackistry, libskry)[inputs]: Likewise.
* gnu/packages/audio.scm (aubio, bs1770gain)[inputs]: Likewise.
* gnu/packages/education.scm (openboard)[inputs]: Likewise.
* gnu/packages/emulators.scm (dolphin-emu, retroarch, pcsxr, ppsspp)[inputs]:
Likewise.
* gnu/packages/game-development.scm (warsow-qfusion)[inputs]: Likewise.
* gnu/packages/games.scm (oshu, hedgewars)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/graphics.scm (openscenegraph)[inputs]: Likewise.
* gnu/packages/image-processing.scm (opencv, paraview-5.9)[inputs]: Likewise.
* gnu/packages/julia-jll.scm (julia-ffmpeg-jll)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (kid3)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/linphone.scm (mediastreamer2)[inputs]: Likewise.
* gnu/packages/linux.scm (pipewire)[inputs]: Likewise.
(pipewire-0.3)[inputs]: Replace "ffmpeg" with FFMPEG.
* gnu/packages/mp3.scm (chromaprint)[inputs]: Change from FFMPEG to FFMPEG-4.
* gnu/packages/music.scm (musikcube)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/qt.scm (qtwebengine-5)[inputs]: Likewise.
 2022-12-12 15:12:58 +01:00
Marius Bakke
bf9d119e32
gnu: Sort module imports in (gnu packages scheme). 
* gnu/packages/scheme.scm: Sort imports.  Remove one duplicate.
 2022-12-12 15:12:58 +01:00
Marius Bakke
240c823ae1
gnu: pianobar: Update to 2022.04.01. 
* gnu/packages/music.scm (pianobar): Update to 2022.04.01.
 2022-12-12 15:12:58 +01:00
Marius Bakke
1572071b68
gnu: motion: Remove input labels. 
* gnu/packages/video.scm (motion)[native-inputs, inputs]: Remove labels.
 2022-12-12 15:12:57 +01:00
Marius Bakke
dce40ccc47
gnu: motion: Update to 4.5.0. 
* gnu/packages/video.scm (motion): Update to 4.5.0.
 2022-12-12 15:12:57 +01:00
Marius Bakke
3dc667b6f8
gnu: vapoursynth: Remove input labels. 
* gnu/packages/video.scm (vapoursynth)[native-inputs]: Remove labels.
 2022-12-12 15:12:57 +01:00
Marius Bakke
85ea2dfc4c
gnu: vapoursynth: Update to 61. 
* gnu/packages/video.scm (vapoursynth): Update to 61.
 2022-12-12 15:12:57 +01:00
Marius Bakke
6bfde85d36
gnu: wxsvg: Update to 1.5.24. 
* gnu/packages/wxwidgets.scm (wxsvg): Update to 1.5.24.
 2022-12-12 15:12:57 +01:00
Marius Bakke
f9fb8460ce
gnu: tracker-miners: Remove obsolete input. 
* gnu/packages/gnome.scm (tracker-miners)[native-inputs]: Remove INTLTOOL.
Add GETTEXT-MINIMAL.
 2022-12-12 15:12:57 +01:00
Marius Bakke
b8b4d63137
gnu: OpenLDAP: Update to 2.6.3. 
* gnu/packages/openldap.scm (openldap-2.6): Update to 2.6.3.
 2022-12-12 15:12:57 +01:00
Ludovic Courtès
302a84a593
Merge branch 'version-1.4.0' 2022-12-12 15:03:35 +01:00
Ricardo Wurmus
94e9651241
gnu: Add python-pomegranate. 
* gnu/packages/python-xyz.scm (python-pomegranate): New variable.
 2022-12-12 14:37:04 +01:00
Ricardo Wurmus
bc47a1bf02
gnu: Add python-pygtrie. 
* gnu/packages/python-xyz.scm (python-pygtrie): New variable.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
49ec1fbc8f
gnu: Add python-flask-jwt. 
* gnu/packages/python-web.scm (python-flask-jwt): New variable.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
be9e8c3963
gnu: Add python-apispec-webframeworks. 
* gnu/packages/python-xyz.scm (python-apispec-webframeworks): New variable.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
a88fa1ced7
gnu: Add python-fit-nbinom. 
* gnu/packages/python-xyz.scm (python-fit-nbinom): New variable.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
97cfa1cd78
gnu: Add python-py4j. 
* gnu/packages/python-xyz.scm (python-py4j): New variable.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
df9a7c2032
gnu: Add python-imbalanced-learn. 
* gnu/packages/machine-learning.scm (python-imbalanced-learn): New variable.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
91d4a78f41
gnu: Add python-cleanlab-1. 
* gnu/packages/machine-learning.scm (python-cleanlab-1): New variable.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
eb23379828
gnu: Add python-cleanlab. 
* gnu/packages/machine-learning.scm (python-cleanlab): New variable.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
2c8a53cb6b
gnu: bioperl-minimal: Remove trailing #T from build phase. 
* gnu/packages/bioinformatics.scm (bioperl-minimal)[arguments]: Remove
trailing #T from build phase.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
7c8832e106
gnu: u-boot: Use plain list of inputs. 
* gnu/packages/bootloaders.scm (u-boot)[native-inputs]: Drop input labels.
 2022-12-12 14:37:03 +01:00
Ricardo Wurmus
5b0e656e57
gnu: u-boot: Update to 2022.10. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2022.10.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Disable
fit_pre_load_data, which depends on openssl.
 2022-12-12 14:37:03 +01:00
Joeke de Graaf
ad4bb682d3
gnu: eisl: Update to 2.65. 
* gnu/packages/lisp.scm (eisl): Update to 2.65.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-12 11:51:45 +01:00
Paul A. Patience
7a1f1a48cb
gnu: cl-april: Update to 1.0-3.bdd74f1. 
* gnu/packages/lisp-xyz.scm (sbcl-april): Update to 1.0-3.bdd74f1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-12 11:34:46 +01:00
jgart
fbec026f42
gnu: Add cl-conduit-packages. 
* gnu/packages/lisp-xyz.scm (cl-conduit-packages, ecl-conduit-packages,
  sbcl-conduit-packages): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-12 11:33:33 +01:00
jgart
911b0a5451
gnu: Add cl-fare-csv. 
* gnu/packages/lisp-xyz.scm (cl-fare-csv, ecl-fare-csv, sbcl-fare-csv):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-12 11:24:47 +01:00
Pierre Neidhardt
8ac8ca3252
gnu: mcomix: Update to 2.0.2. 
* gnu/packages/image-viewers.scm (mcomix): Update to 2.0.2.
 2022-12-12 10:52:47 +01:00
Efraim Flashner
45f5feb279
image: Use 512 byte blocks for EFI partitions. 
Addresses <https://issues.guix.gnu.org/59695>.

* gnu/build/image.scm (make-vfat-image): When creating a fat filesystem
for UEFI bootable partition use 512 byte blocks.
 2022-12-12 10:47:59 +02:00
Arun Isaac
2d989ad597
gnu: python-seaborn: Update to 0.12.0. 
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.12.0.
[source]: Remove patches.
[arguments]: Import (ice-9 match) module. Remove patch-more-tests and
start-xserver phases. Replace build and install phases. Fix pytest command in
check phase.
[native-inputs]: Add python-flit-core and python-pypa-build. Remove
xorg-server-for-tests.
* gnu/packages/patches/python-seaborn-2690.patch,
gnu/packages/patches/python-seaborn-kde-test.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Unregister them.
 2022-12-11 23:55:54 +00:00
Vagrant Cascadian
e074559eda
gnu: guile-json: Update to 4.7.3. 
* gnu/packages/guile.scm (guile-json): Update to 4.7.3.
 2022-12-11 15:23:02 -08:00
Evgeny Pisemsky
14ca72226b
gnu: perl-lingua-translit: Wrap translit program. 
* gnu/packages/perl.scm (perl-lingua-translit)[arguments]: Add “wrap-translit”
phase.
[inputs]: Add bash-minimal.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-12-10 20:38:40 +01:00
Efraim Flashner
a7f41aac7a
gnu: julia-geometrybasics: Update to 0.4.2. 
* gnu/packages/julia-xyz.scm (julia-geometrybasics): Update to 0.4.2.
 2022-12-10 21:10:10 +02:00
Efraim Flashner
aa583170dc
gnu: julia-http: Update to 0.9.17. 
* gnu/packages/julia-xyz.scm (julia-http): Update to 0.9.17.
[arguments]: Skip another test in 'disable-network-tests phase.
 2022-12-10 21:10:10 +02:00
Efraim Flashner
9f980cdf52
gnu: julia-chainrulescore: Skip two tests. 
* gnu/packages/julia-xyz.scm (julia-chainrulescore)[arguments]: Add a
phase to skip two tests.
 2022-12-10 21:10:09 +02:00
Efraim Flashner
a5db747515
gnu: julia-colortypes: Update to 0.11.1. 
* gnu/packages/julia-xyz.scm (julia-colortypes): Update to 0.11.1.
[arguments]: Add phase to skip broken test.
 2022-12-10 21:10:09 +02:00
Efraim Flashner
a87f448cbf
gnu: julia-irtools: Update to 0.4.7. 
* gnu/packages/julia-xyz.scm (julia-irtools): Update to 0.4.7.
 2022-12-10 21:10:09 +02:00
Efraim Flashner
a11281b01c
gnu: julia-benchmarktools: Update to 1.3.2. 
* gnu/packages/julia-xyz.scm (julia-benchmarktools): Update to 1.3.2.
 2022-12-10 21:10:08 +02:00
Efraim Flashner
71fb8f328d
gnu: julia-fixedpointnumbers: Update to 0.8.4-1.59ee94b. 
* gnu/packages/julia-xyz.scm (julia-fixedpointnumbers): Update to
0.8.4-1.59ee94b.
[arguments]: Skip tests. Remove 'disable-failing-test phase.
 2022-12-10 21:10:08 +02:00
Ludovic Courtès
6dbdb5fcf5
gnu: guix: Update to 1.4.0rc2. 2022-12-10 18:19:22 +01:00
Ludovic Courtès
61b7e96877
install: 'umount-cow-store' retries upon EBUSY. 
Possibly fixes <https://issues.guix.gnu.org/59884>.

* gnu/build/install.scm (umount*): New procedure.
(unmount-cow-store): Use it instead of 'umount'.
 2022-12-10 14:34:35 +01:00
Mathieu Othacehe
4473be9858
installer: Detect mapped installation devices. 
Fixes: <https://issues.guix.gnu.org/59823>

* gnu/installer/parted.scm (mapped-device?,
mapped-device-parent-partition): New procedures.
(eligible-devices): Detect mapped installation devices using the new
procedures.
 2022-12-10 11:24:07 +01:00
Mathieu Othacehe
1ab48edb16
installer: Detect mapped installation devices. 
Fixes: <https://issues.guix.gnu.org/59823>

* gnu/installer/parted.scm (mapped-device?,
mapped-device-parent-partition): New procedures.
(eligible-devices): Detect mapped installation devices using the new
procedures.
 2022-12-10 11:23:27 +01:00
Nicolas Goaziou
5051cbaeee
gnu: emacs-wisp-mode: Update to 1.0.8. 
* gnu/packages/emacs-xyz.scm (emacs-wisp-mode): Update to 1.0.8.
 2022-12-10 09:13:34 +01:00
Nicolas Goaziou
991eb7717e
gnu: emacs-logview: Update to 0.16. 
* gnu/packages/emacs-xyz.scm (emacs-logview): Update to 0.16.
 2022-12-10 09:13:34 +01:00
Nicolas Goaziou
0e8b8550cd
gnu: emacs-jarchive: Update to 0.9.0. 
* gnu/packages/emacs-xyz.scm (emacs-jarchive): Update to 0.9.0.
 2022-12-10 09:13:34 +01:00
Nicolas Goaziou
3e6a8efbab
gnu: emacs-evil-nerd-commenter: Update to 3.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.6.0.
 2022-12-10 09:13:34 +01:00
Nicolas Goaziou
21bc825be8
gnu: emacs-ement: Update to 0.5.1. 
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.5.1.
 2022-12-10 09:13:33 +01:00
Nicolas Goaziou
bafce38e9a
gnu: emacs-company-math: Update to 1.5. 
* gnu/packages/emacs-xyz.scm (emacs-company-math): Update to 1.5.
 2022-12-10 09:13:33 +01:00
Nicolas Goaziou
23b64fbbe1
gnu: emacs-company-emoji: Update to 2.7.0. 
* gnu/packages/emacs-xyz.scm (emacs-company-emoji): Update to 2.7.0.
 2022-12-10 09:13:33 +01:00
jgart
7d48ab424b
gnu: Add emacs-acme-theme. 
* gnu/packages/emacs-xyz.scm (emacs-acme-theme): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-10 09:13:32 +01:00
jgart
d0a038b17a
gnu: Add emacs-carp. 
* gnu/packages/emacs-xyz.scm (emacs-carp): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-10 09:13:32 +01:00
Leo Famulari
3ae6f30767
gnu: linux-libre 4.9: Update to 4.9.335. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.335.
(linux-libre-4.9-pristine-source): Update hash.
 2022-12-09 19:55:38 -05:00
Leo Famulari
19836fe4f1
gnu: linux-libre 4.14: Update to 4.14.301. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.301.
(linux-libre-4.14-pristine-source): Update hash.
 2022-12-09 19:55:37 -05:00
Leo Famulari
7b0fd5a0b4
gnu: linux-libre 4.19: Update to 4.19.268. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.268.
(linux-libre-4.19-pristine-source): Update hash.
 2022-12-09 19:55:37 -05:00
Leo Famulari
733396eb2b
gnu: linux-libre 5.4: Update to 5.4.226. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.226.
(linux-libre-5.4-pristine-source): Update hash.
 2022-12-09 19:55:37 -05:00
Leo Famulari
773ba52f93
gnu: linux-libre 5.10: Update to 5.10.158. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.158.
(linux-libre-5.10-pristine-source): Update hash.
 2022-12-09 19:55:37 -05:00
Leo Famulari
b52ffca2bb
gnu: linux-libre 5.15: Update to 5.15.82. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.82.
(linux-libre-5.15-pristine-source): Update hash.
 2022-12-09 19:55:37 -05:00
Leo Famulari
67e8fd6b38
gnu: linux-libre: Update to 6.0.12. 
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.12.
(linux-libre-6.0-pristine-source): Update hash.
 2022-12-09 19:55:36 -05:00
Ludovic Courtès
591af24ade
installer: Print progress bars and such as soon as \r is read. 
Fixes <https://issues.guix.gnu.org/59922>.

Previously progress bars and related things would be buffered by
'run-external-command-with-line-hooks' until \n is read.

* gnu/installer/utils.scm (run-external-command-with-line-hooks): Use
'read-delimited' rather than 'get-line'.  Pass 'concat as the last
argument.
(%display-line-hook): Remove.
(run-command): Use 'display' instead of '%display-line-hook'.
(%syslog-line-hook): Add "\n" when LINE doesn't end in \n.
(%installer-log-line-hook): Do not add an extra newline.
(installer-log-line): Add an extra newline.
 2022-12-09 17:49:22 +01:00
Ludovic Courtès
556520a33c
services: nscd: Use nscd from 'glibc-final' on native builds. 
This reduces the closure size of systems by removing one glibc
copy--namely (@ (gnu packages base) glibc) in addition to (@ (gnu
packages commencement) glibc-final).

* gnu/services/base.scm (<nscd-configuration>)[glibc]: Change default
value to use 'let-system' and 'canonical-package' as appropriate.
 2022-12-09 16:43:25 +01:00
Ludovic Courtès
755c4b496e
system: Remove unused yggdrasil OS template. 
This file was added in fe1cd098d2 but it's
not referenced from anywhere, not even gnu/local.mk.  Furthermore, we
don't normally add full OS examples for the purposes of illustrating the
use of a single service.

* gnu/system/examples/yggdrasil.tmpl: Remove.
 2022-12-09 16:40:53 +01:00
Ludovic Courtès
156a881001
services: base: Use 'match-record' instead of 'match'. 
* gnu/services/base.scm (agetty-shepherd-service)
(mingetty-shepherd-service)
(nscd.conf-file)
(udev-shepherd-service)
(udev-etc)
(gpm-shepherd-service)
(network-set-up/linux)
(network-tear-down/linux)
(static-networking-shepherd-service)
(greetd-agreety-tty-session-command)
(greetd-agreety-tty-xdg-session-command): Use 'match-record' instead of
'match'.
(guix-accounts): Use <guix-configuration> accessors.
(udev-service-type): Use <udev-configuration> accessors.
 2022-12-08 13:21:53 +01:00
Ludovic Courtès
93d37985da
home: services: Use 'match-record' instead of 'match'. 
* gnu/home/services/mcron.scm (home-mcron-shepherd-services): Use
'match-record' instead of 'match'.
* gnu/home/services/shells.scm (home-bash-extensions): Likewise.
* gnu/home/services/xdg.scm (serialize-xdg-desktop-entry): Likewise.
 2022-12-08 13:21:46 +01:00
Ludovic Courtès
754a7660a1
records: 'match-record' checks fields at macro-expansion time. 
This allows 'match-record' to be more efficient (field offsets are
computed at compilation time) and to report unknown fields at
macro-expansion time.

* guix/records.scm (map-fields): New macro.
(define-record-type*)[rtd-identifier]: New procedure.
Define TYPE as a macro and use a separate identifier for the RTD.
(lookup-field, match-record-inner): New macros.
(match-record): Rewrite in terms of 'match-error-inner'.
* tests/records.scm ("match-record, simple")
("match-record, unknown field"): New tests.
* gnu/services/cuirass.scm (cuirass-shepherd-service): Rename 'log-file'
local variable to 'main-log-file'.
* gnu/services/getmail.scm (serialize-getmail-configuration-file): Move
after <getmail-configuration-file> definition.
 2022-12-08 13:21:23 +01:00
Ludovic Courtès
a420b4f34e
services: fail2ban: Start server in the foreground. 
Previously, we were passing '-b', thereby starting the server in the
background.  Consequently the 'start' method could complete before the
server was ready to accept connections on its socket, leading to
non-deterministic test failures.

Reported by Mathieu Othacehe <othacehe@gnu.org>.

* gnu/services/security.scm (fail2ban-shepherd-service): Change
FAIL2BAN-ACTION to invoke 'fail2ban-client'.
Change 'start' method to use 'make-forkexec-constructor'; start the
server in the foreground with '-f' and pass '-x' to force execution of
the server, as done upstream in 'fail2ban.service.in'.
 2022-12-06 17:49:50 +01:00
Ludovic Courtès
a508b5c778
services: fail2ban: Remove unnecessary Shepherd 'modules' field. 
* gnu/services/security.scm (fail2ban-shepherd-service): Remove
unnecessary 'modules' field.
 2022-12-06 17:07:46 +01:00
Ludovic Courtès
e45c83c397
services: fail2ban: 'stop' returns #f when the dameon is stopped. 
* gnu/services/security.scm (fail2ban-shepherd-service): Change
FAIL2BAN-ACTION to return an 'invoke' gexp.
Adjust the shepherd 'start' and 'stop' fields accordingly.  Have 'stop'
return #f on success.
 2022-12-06 17:07:12 +01:00
Ludovic Courtès
fe563a87ad
gnu: texinfo, info-reader: Do not run tests when cross-compiling. 
Fixes a regression introduced in
a3264f31df.

Reported by Mathieu Othacehe <othacehe@gnu.org>.

* gnu/packages/texinfo.scm (texinfo)[arguments]: Change #:tests? to not
run tests when cross-compiling.
 2022-12-06 15:22:26 +01:00
Ludovic Courtès
9ad14196ce
image: Clarify comment. 
* gnu/system/image.scm: Adjust comment.
 2022-12-06 15:11:44 +01:00
Ludovic Courtès
6232959311
tests: docker-system: Increase image size. 
* gnu/tests/docker.scm (run-docker-system-test)[vm]: Increase
'disk-image-size'.
 2022-12-06 15:10:24 +01:00
Ludovic Courtès
f59aa79ca3
system: vm: Non-volatile 'run-vm.sh' creates a CoW image. 
Previously, copying the image would consume a lot of space and was
I/O-intensive, to the point that the marionette connection timeout of
20s could be reached when running tests like "docker-system".

* gnu/system/vm.scm (common-qemu-options): Pass 'format=' for each
'-drive' option.
(system-qemu-image/shared-store-script)[copy-image]: New variable.
[builder]: Use it when VOLATILE? is false.
 2022-12-06 15:06:35 +01:00
Maxim Cournoyer
2493de0d1a
Revert "tests: install: Fix iso-image-installer test." 
This reverts commit 0f66ef9aa9.  e2fsprogs is
now included in the installation operating system since
34f69bc6e6ea555929ecca83ee7592f5261ff5f2, making this workaround obsolete.

Suggested-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-06 10:24:59 +01:00
Maxim Cournoyer
ba4aed0f1f
install: Add missing e2fsprogs utility. 
* gnu/system/install.scm (%installer-disk-utilities): Add e2fsprogs.

Reported-by: Adam Kandur <kefironpremise@gmail.com>
 2022-12-06 10:24:55 +01:00
Maxim Cournoyer
aeecd06ab9
system: Rename and move %base-packages-disk-utilities. 
Rationale: It is only used in INSTALLATION-OS and doesn't make sense to be
used in another context, given that file systems now automatically pull their
dependencies since commit 45eac6cdf5 (services:
Add file system utilities to profile).

* gnu/system.scm (%base-packages-disk-utilities): Deprecate and rename to...
* gnu/system/install.scm (%installer-disk-utilities): ... this.
(installation-os) [packages]: Adjust accordingly.
 2022-12-06 10:24:39 +01:00
Maxim Cournoyer
43e18fd6c6
system: Add e2fsprogs to %base-packages-utils. 
Rationale: Even when not using an ext file system, the utilities provided by
e2fsprogs are useful, for example to set the copy-on-write attribute of a
Btrfs file system.

* gnu/system.scm (%base-packages-utils): Add e2fsprogs.
 2022-12-06 10:23:09 +01:00
zimoun
e692cb6035
gnu: julia-documenter: Fix test suite regression. 
* gnu/packages/julia-xyz.scm (julia-documenter)[arguments]<#:phases>:
Substitute a work around to fix the change of 'git submodule' default
behaviour introduced by Git v2.38.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-05 22:24:38 +01:00
Ludovic Courtès
241772d5c0
installer: Log provenance data. 
* gnu/installer.scm (provenance-sexp): New procedure.
(installer-program)[installer-builder]: Add 'installer-log-line' call.
 2022-12-05 14:57:15 +01:00
Maxim Cournoyer
41407fda7a
services: configuration: Rename location accessor to "source-location". 
Fixes <https://issues.guix.gnu.org/59423>.

* gnu/services/configuration.scm (define-configuration-helper): Rename the
accessor of the %location field from "NAME-location" to
"NAME-source-location".

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Reported-by: Pierre Langlois <pierre.langlois@gmx.com>
 2022-12-04 21:47:19 +01:00
Tobias Geerinckx-Rice
c8316c1e47
gnu: xdg-desktop-portal-wlr: Install missing documentation. 
* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr)[arguments]: Add a new
'install-documentation phase.
 2022-12-04 01:00:00 +01:00
Maxim Cournoyer
0ffa501f2b
Revert "gnu: make-linux-libre*: Remove input labels." 
This reverts commit dfc6957a5a.  git-bisect
found it broke guix pull on non-x86_64 systems like powerpc64le, for reasons
to investigate.
 2022-12-09 08:18:42 -05:00
Efraim Flashner
7baba7ab58
gnu: julia-optimtestproblems: Add missing dependencies. 
* gnu/packages/julia-xyz.scm (julia-optimtestproblems)[arguments]: Add
missing base dependencies to julia-package-dependencies.
 2022-12-09 10:15:34 +02:00
Efraim Flashner
7d0a263846
gnu: julia-statsbase: Update to 0.33.10. 
* gnu/packages/julia-xyz.scm (julia-statsbase): Update to 0.33.10.
 2022-12-09 10:15:34 +02:00
Efraim Flashner
ec7e7f0033
gnu: julia-distances: Update to 0.10.7. 
* gnu/packages/julia-xyz.scm (julia-distances): Update to 0.10.7.
[arguments]: Skip an additional test on 32-bit systems.
 2022-12-09 10:15:34 +02:00
Efraim Flashner
f0af4ecc7b
gnu: julia-bfloat16s: Update to 0.4.0. 
* gnu/packages/julia-xyz.scm (julia-bfloat16s): Update to 0.4.0.
 2022-12-09 10:15:33 +02:00
Ludovic Courtès
b0b1ce9dca
gnu: guile-next: Update to a1a8558. 
* gnu/packages/guile.scm (guile-next): Update to a1a8558.
 2022-12-09 08:46:22 +01:00
Greg Hogan
63a483265a
gnu: Add htmlq. 
* gnu/packages/rust-apps.scm (htmlq): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-09 08:46:22 +01:00
Greg Hogan
8c7c571d44
gnu: Add rust-kuchiki-0.8. 
* gnu/packages/crates-io.scm (rust-kuchiki-0.8): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-09 08:46:22 +01:00
jgart
dd9033fc49
gnu: Add guile-jtd. 
* gnu/packages/guile-xyz.scm (guile-jtd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-09 08:46:21 +01:00
Hilton Chain
7fde9758c5
gnu: Add buku-run. 
* gnu/packages/web.scm (buku-run): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-09 08:46:21 +01:00
Sharlatan Hellseher
91641093e2
gnu: rawtherapee: Update to 5.9. 
* gnu/packages/photo.scm (rawtherapee): Update to 5.9.
[arguments]: Use gexp.
[inputs]: Remove labels.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-09 14:18:17 +08:00
Gabriel Wicki
ec9326f021
system: images: Add networking support to pine64 image. 
* gnu/system/images/pine64.scm (pine64-barebones-os) [services]: Add
dhcp-client-service-type and ntp-service-type to the list of services.
[packages]: Add nss-certs to the list of packages.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-09 11:02:15 +08:00
EuAndreh
8d6feb4b10
services: wireguard: Use the parameterized wireguard package. 
* gnu/services/vpn.scm (wireguard-activation): Use the "wg" binary from
the package given to <wireguard-configuration>.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-09 10:53:50 +08:00
cage
898f9adc20
gnu: gmid: Update to 1.8.6. 
* gnu/packages/web.scm (gmid): Update to 1.8.6.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-09 10:45:35 +08:00
Ron Nazarov
426af37387
gnu: nethack: Fix missing command line arguments support in wrapper. 
* gnu/packages/games.scm (nethack)[phases]: Pass "$@" to nethack.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-09 10:34:14 +08:00
Felix Gruber
f58978868a
gnu: sameboy: Update to 0.15.8. 
* gnu/packages/emulators.scm (sameboy): Update to 0.15.8.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-09 10:19:19 +08:00
Edison Ibáñez
b44f0261f8
gnu: xonsh: Update to 0.13.4. 
* gnu/packages/shells.scm (xonsh): Update to 0.13.4.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-12-09 10:13:18 +08:00
Danny Milosavljevic
dfa0f34ee7
gnu: Add du-dust. 
* gnu/packages/admin.scm (du-dust): New variable.
 2022-12-08 22:07:42 +01:00
Danny Milosavljevic
f06bd657bd
gnu: Add rust-thousands. 
* gnu/packages/crates-io.scm (rust-thousands-0.2): New variable.
 2022-12-08 22:07:42 +01:00
Danny Milosavljevic
5a5eb5250f
gnu: Add rust-config-file. 
* gnu/packages/crates-io.scm (rust-config-file-0.2): New variable.
 2022-12-08 22:07:42 +01:00
Danny Milosavljevic
95742d1d56
gnu: Add rust-serde-xml-rs. 
* gnu/packages/crates-io.scm (rust-serde-xml-rs-0.5): New variable.
 2022-12-08 22:07:42 +01:00
Danny Milosavljevic
c1707f036c
gnu: Add rust-sysinfo. 
* gnu/packages/crates-io.scm (rust-sysinfo-0.15): New variable.
 2022-12-08 22:07:40 +01:00
Jonathan Brielmaier
5c996aa8e4
gnu: icedove: Update to 102.5.1 [fixes CVE-2022-45414]. 
* gnu/packages/gnuzilla.scm (icedove): Update to 102.5.1.
 2022-12-08 20:18:04 +01:00
Efraim Flashner
c1eae06e74
gnu: julia-unitful: Update to 1.12.2. 
* gnu/packages/julia-xyz.scm (julia-unitful): Update to 1.12.2.
 2022-12-08 20:10:30 +02:00
Efraim Flashner
6191d64f8a
gnu: julia-woodburymatrices: Update to 0.5.5. 
* gnu/packages/julia-xyz.scm (julia-woodburymatrices): Update to 0.5.5.
[arguments]: Remove 'remove-failing-test-i686 phase.
 2022-12-08 20:03:44 +02:00
Efraim Flashner
480a39ada7
gnu: julia-static: Update to 0.8.3. 
* gnu/packages/julia-xyz.scm (julia-static): Update to 0.8.3.
 2022-12-08 19:53:40 +02:00
Efraim Flashner
d37dad8372
gnu: julia-simd: Update to 3.4.2. 
* gnu/packages/julia-xyz.scm (julia-simd): Update to 3.4.2.
 2022-12-08 19:53:40 +02:00
Efraim Flashner
151a450f48
gnu: julia-jive: Update to 0.2.27. 
* gnu/packages/julia-xyz.scm (julia-jive): Update to 0.2.27.
 2022-12-08 19:53:40 +02:00
Efraim Flashner
600c8cec79
gnu: julia-genericschur: Update to 0.5.3. 
* gnu/packages/julia-xyz.scm (julia-genericschur): Update to 0.5.3.
 2022-12-08 19:53:39 +02:00
Efraim Flashner
ca89740f3b
gnu: julia-exprtools: Update to 0.1.8. 
* gnu/packages/julia-xyz.scm (julia-exprtools): Update to 0.1.8.
 2022-12-08 19:53:39 +02:00
Efraim Flashner
e8da13598a
gnu: julia-datastructures: Update to 0.18.13. 
* gnu/packages/julia-xyz.scm (julia-datastructures): Update to 0.18.13.
 2022-12-08 19:53:39 +02:00
Efraim Flashner
b2c4e83f2c
gnu: julia-aqua: Update to 0.5.5. 
* gnu/packages/julia-xyz.scm (julia-aqua): Update to 0.5.5.
 2022-12-08 19:53:39 +02:00
Efraim Flashner
1123b6856c
gnu: julia-abstracttrees: Update to 0.4.3. 
* gnu/packages/julia-xyz.scm (julia-abstracttrees): Update to 0.4.3.
 2022-12-08 19:53:38 +02:00
Efraim Flashner
61cbc51a78
gnu: julia-compat: Fix test suite. 
* gnu/packages/julia-xyz.scm (julia-compat)[arguments]: Add phase to
patch shell invocation.
 2022-12-08 19:53:38 +02:00
Efraim Flashner
d896a4d2ff
gnu: suitesparse: Skip building graphblas on riscv64-linux. 
* gnu/packages/maths.scm (suitesparse)[arguments]: Add a phase when
building for riscv64-linux to skip building graphblas.
 2022-12-08 19:53:38 +02:00
Efraim Flashner
02d5912062
gnu: julia: Update to 1.8.3. 
* gnu/packages/julia.scm (julia): Update to 1.8.3.
[source]: Remove one patch.
[arguments]: Adjust 'prepare-deps phase to changes in inputs. Remove
custom 'use-system-libwhich, 'change-number-of-precompiled-statements,
'symlink-libraries phases. In 'fix-include-and-link-paths phase remove
substitution for utf8proc linking and adjust libuv linking. Fix
reference to shell in 'replace-default-shell phase. Adjust the
'shared-objects-path phase to changes in the source. Change the
'enable-parallel-tests phase for upstream changes. Adjust the
'adjust-test-suite phase to be more robust. Change the
'disable-broken-tests phase to help the test suite pass. Rename
'symlink-llvm-utf8proc phase to 'symlink-missing-libraries and add two
more. Adjust make-flags for changes in shared system libraries. Reorder
make-flags to changes in the source. Except for aarch64, use the
defaults for choosing to use 64-bit blas.
[inputs]: Add libblastrampoline. Replace libgit-1.1 with libgit-1.3,
utf8proc-2.7.1 with utf8proc-2.8.0.
[native-inputs]: Replace python-2 with python.
(libunwind-julia): Update to 1.5.0.
[source]: Update patches.
* gnu/packages/libevent.scm (libuv-julia): Update to 2.0.0-4.e6f0e49.
[arguments]: Also build static library, build position-independent-code.
* gnu/packages/llvm.scm (llvm-julia): Update to llvm-13, following
upstream's build instructions.
* gnu/packages/maths.scm (openlibm): Update to 0.8.1.
* gnu/packages/textutils.scm (utf8proc-2.7.1): Update and rename to
utf8proc-2.8.0.
[native-inputs]: Update unicode to 14.0.0.
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.28.0.
[source]: Remove snippet.
[arguments]: Remove trailing #t from phases.
* gnu/packages/patches/julia-allow-parallel-build.patch,
(julia-patch): Update version string to 1.8.2.
gnu/packages/patches/libunwind-julia-fix-GCC10-fno-common.patch: Remove
files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Co-authored-by: Akira Kyle <akira@akirakyle.com>
 2022-12-08 19:53:16 +02:00
Efraim Flashner
7d8f92dd87
gnu: julia: Make libquadmath optional. 
* gnu/packages/julia.scm (julia)[arguments]: Replace custom phase
removing libquadmath requirement for aarch64-linux with phase to make
libquadmath support optional.
 2022-12-08 19:52:54 +02:00