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6890 Commits

Author SHA1 Message Date
Ricardo Wurmus
43c565d2e7 gnu: Add Jellyfish. 
* gnu/packages/bioinformatics.scm (jellyfish): New variable.
 2016-01-06 11:10:46 +01:00
Andreas Enge
7d1f8d4f52 gnu: calibre: Update to 2.48.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.48.0.
 2016-01-05 22:46:54 +01:00
Roel Janssen
a7ec569c98 gnu: Add LDC. 
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
 2016-01-05 16:24:57 +01:00
Dmitry Bogatov
1075b43737 gnu: Add emacs-undo-tree. 
* gnu/packages/emacs.scm (emacs-undo-tree): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-01-05 00:28:42 +01:00
Ludovic Courtès
fe542b9762 gnu: emacs: Remove 'info.info'. 
* gnu/packages/emacs.scm (emacs)[arguments]: Use 'modify-phases'.  Add
'remove-info.info' phase.
 2016-01-05 00:28:42 +01:00
Ludovic Courtès
fb74174958 linux-boot: Remove verbose output for module loads. 
* gnu/build/linux-boot.scm (boot-system): Leave
'current-module-debugging-port' unchanged.
* gnu/build/linux-modules.scm (load-linux-module*): Update comment about
'mmap'.
 2016-01-05 00:28:42 +01:00
Ludovic Courtès
be7be9e8dd services: Move /tmp cleanup to a separate service. 
* gnu/services.scm (compute-boot-script): Remove /tmp and /var/run
deletion code from here.
(cleanup-gexp): New procedure with /tmp and /var/run deletion code
formerly in 'compute-boot-script'.
(cleanup-service-type): New variable.
* gnu/system.scm (essential-services): Add an instance of
CLEANUP-SERVICE-TYPE.
 2016-01-05 00:28:42 +01:00
Ludovic Courtès
94af9daa73 services: boot: Reinstate /tmp and /var/run deletion. 
For some time /tmp and /var/run were not being deleted because
'delete-file-recursively' was unbound.

* gnu/services.scm (compute-boot-script)[%modules, modules, compiled]:
New variables.  Use them to augment the module search path.
 2016-01-05 00:28:42 +01:00
Ricardo Wurmus
4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH. 
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus
2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH. 
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus
c2e87caaa6 gnu: julia: Update to 0.4.2. 
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
 2016-01-04 11:35:57 +01:00
Ricardo Wurmus
50b40d0709 gnu: Add libuv-julia. 
* gnu/packages/julia.scm (libuv-julia): New variable.
 2016-01-04 11:35:57 +01:00
Ricardo Wurmus
f1e3a8aed2 gnu: utf8proc: Update to 1.3.1. 
* gnu/packages/textutils.scm (utf8proc): Update to 1.3.1.
[arguments]: Remove custom "install" phase.
 2016-01-04 11:35:57 +01:00
Leo Famulari
77553dff86 gnu: samba: Update to 4.3.3. 
Fixes CVE-2015-{3223,5252,5299,5296,8467,5330}.

* gnu/packages/samba.scm (samba): Update to 4.3.3.
 2016-01-03 14:59:49 -05:00
Leo Famulari
f6cddbefcc gnu: ldb: Update to 1.1.24. 
Required for samba-4.3.3 in order to fix CVE-2015-5330 and
CVE-2015-3223.

* gnu/packages/samba.scm (ldb): Update to 1.2.24.
 2016-01-03 14:59:49 -05:00
Eric Bavier
209778717a gnu: Add Asymptote. 
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-02 16:04:55 -06:00
Erik Edrosa
b989390889 gnu: Add python-markdown. 
* gnu/packages/python.scm (python-markdown, python2-markdown): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-01-02 00:07:29 -05:00
宋文武
05d48c5243 gnu: love: Update to 0.10.0. 
* gnu/packages/game-development.scm (love): Update to 0.10.0.
 2016-01-02 10:31:53 +08:00
Ludovic Courtès
319007c507 gnu: guile-ssh: Update to 0.9.0. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.9.0.
 2016-01-01 22:59:20 +01:00
Ludovic Courtès
f453f637d5 system: Allow the root file system to be named by UUID. 
* gnu/build/file-systems.scm (canonicalize-device-spec)[canonical-title]:
Use 'string->uuid' to check whether SPEC is a UUID.
When SPEC is a string and CANONICAL-TITLE is 'uuid, call 'string->uuid'.
* gnu/system.scm (operating-system-grub.cfg): Add 'root-device'
variable and use it for the "--root=" argument.
 2016-01-01 22:50:26 +01:00
Ludovic Courtès
f8865db6a0 file-systems: Move 'string->uuid' to the build side. 
* gnu/system/file-systems.scm (%uuid-rx, string->uuid): Move to...
* gnu/build/file-systems.scm (%uuid-rx, string->uuid): ... here.  New
variables.
 2016-01-01 22:41:35 +01:00
Ludovic Courtès
29824d80ec system: Allow the root file system to have a UUID. 
This is a followup to ab64483.

* gnu/system.scm (mapped-device-user): Check whether the title of FS is
'device before calling 'string=?'.
* gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]:
Likewise.
 2016-01-01 22:34:13 +01:00
Fabian Harfert
45147b0caa gnu: Add xaos. 
* gnu/packages/maths.scm (xaos): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-12-31 11:29:43 +03:00
Leo Famulari
658212ebf7 gnu: Move cursynth to (gnu packages music). 
* gnu/packages/cursynth.scm: Remove.
* gnu/packages/music.scm (cursynth): New variable, from cursynth.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove cursynth.scm.
 2015-12-30 21:26:05 -05:00
Leo Famulari
2ef8bbc3ae gnu: libcue: Update source URL. 
* gnu/packages/cdrom.scm (libcue)[source]: Update URL.
 2015-12-30 19:59:58 -05:00
Efraim Flashner
34da7af4c1 gnu: python-mox3: Update to 0.13.0. 
* gnu/packages/openstack.scm (python-mox3): Update to 0.13.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
13fcc6df37 gnu: python-fixtures: Update to 1.4.0. 
* gnu/packages/python.scm (python-fixtures): Update to 1.4.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
af1ab77312 gnu: python-pyld: Update to 0.6.8. 
* gnu/packages/python.scm (python-pyld): Update to 0.6.8.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
1780424035 gnu: python-virtualenv: Update to 13.1.2. 
* gnu/packages/python.scm (python-virtualenv): Update to 13.1.2.
[arguments]: Custom test command.
[inputs]: Remove python-nose, add python-pytest.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
ec89a25cad gnu: python-oslosphinx: Update to 4.2.0. 
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.2.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
f66bb273de gnu: python-oslo.serialization: Update to 2.2.0. 
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.2.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
4768988887 gnu: python-os-testr: Update to 0.5.0. 
* gnu/packages/openstack.scm (python-os-testr): Update to 0.5.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
45f4c28d80 gnu: python-stevedore: Update to 1.10.0. 
* gnu/packages/openstack.scm (python-stevedore): Update to 1.10.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
622d21bba9 gnu: python-tempest-lib: Update to 0.12.0. 
* gnu/packages/openstack.scm (python-tempest-lib): Update to 0.12.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
690e8c6637 gnu: python-passlib: Update to 1.6.5. 
* gnu/packages/python.scm (python-passlib): Update to 1.6.5.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
03fd001cef gnu: python-libarchive-c: Update to 2.2. 
* gnu/packages/python.scm (python-libarchive-c): Update to 2.2.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
99b00dc796 gnu: python-tlsh: Update to 3.4.4. 
* gnu/packages/python.scm (python-tlsh): Update to 3.4.4.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
b8834c219e gnu: python-webob: Update to 1.5.1. 
* gnu/packages/python.scm (python-webob): Update to 1.5.1.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
1b99553317 gnu: python-flake8: Update to 2.5.1. 
* gnu/packages/python.scm (python-flake8): Update to 2.5.1.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
2abc397225 gnu: python-pyflakes: Update to 1.0.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 1.0.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
3655ee76a6 gnu: python-pyzmq: Update to 15.1.0. 
* gnu/packages/python.scm (python-pyzmq): Update to 15.1.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
f56777be0a gnu: python-psutil: Update to 3.3.0. 
* gnu/packages/python.scm (python-psutil): Update to 3.3.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
38eb6919e1 gnu: python-pycparser: Update to 2.14. 
* gnu/packages/python.scm (python-pycparser): Update to 2.14.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
d9aa097b96 gnu: python-pyrfc3339: Update to 1.0. 
* gnu/packages/python.scm (python-pyrfc3339): Update to 1.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
f7cb984133 gnu: python-nose: Update to 1.3.7. 
* gnu/packages/python.scm (python-nose): Update to 1.3.7.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
ec3bcbc7e4 gnu: python-rpy2: Update to 2.7.6. 
* gnu/packages/python.scm (python-rpy2): Update to 2.7.6.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
11f97c27bc gnu: pelican: Update to 3.6.3. 
* gnu/packages/python.scm (pelican): Update to 3.6.3.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
e98149b3a4 gnu: python-jinja2: Update to 2.8. 
* gnu/packages/python.scm (python-jinja2): Update to 2.8.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
8925d4f345 gnu: python-unidecode: Update to 0.04.18. 
* gnu/packages/python.scm (python-unidecode): Update to 0.04.18.
 2015-12-30 23:16:09 +02:00
Efraim Flashner
7fb9ff4dea gnu: python-blinker: Update to 1.4. 
* gnu/packages/python.scm (python-blinker): Update to 1.4.
 2015-12-30 23:16:09 +02:00