Commit Graph

2319 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
8e80880508
gnu: r-loo: Update to 2.3.1.
* gnu/packages/cran.scm (r-loo): Update to 2.3.1.
2020-07-19 02:19:30 +02:00
Tobias Geerinckx-Rice
702a101257
gnu: Use HTTPS for github.com (and subdomains) home pages.
* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and
follow permanent redirection.
* gnu/packages/check.scm (python-codecov, python-nosexcover)
[home-page]: Likewise.
* gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr)
[home-page]: Likewise.
* gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1)
(rust-objc-0.2, rust-objc-exception-0.1)
(rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0)
(rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1)
[home-page]: Likewise.
* gnu/packages/finance.scm (ledger-agent, keepkey-agent)
[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-tasty-expected-failure)
[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp)
(ghc-warp-tls)[home-page]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags)
(ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir)
(ghc-pretty-show)[home-page]: Likewise.
* gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise.
* gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise.
* gnu/packages/linux.scm (procenv)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd)
(python-pycares)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-progressbar33, python-whatever)
(python-funcy)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby)
(ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
2020-07-16 20:12:06 +02:00
Ricardo Wurmus
2d2b5d60f8
gnu: r-brms: Update to 2.13.3.
* gnu/packages/cran.scm (r-brms): Update to 2.13.3.
2020-07-16 10:08:06 +02:00
Ricardo Wurmus
22df7543b1
gnu: r-gamlss: Update to 5.1-7.
* gnu/packages/cran.scm (r-gamlss): Update to 5.1-7.
2020-07-16 10:08:06 +02:00
Ricardo Wurmus
88804120c3
gnu: r-gamlss-dist: Update to 5.1-7.
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-7.
2020-07-16 10:08:06 +02:00
Ricardo Wurmus
2762d722c5
gnu: r-pillar: Update to 1.4.6.
* gnu/packages/cran.scm (r-pillar): Update to 1.4.6.
[propagated-inputs]: Add r-ellipsis and r-lifecycle.
2020-07-16 10:08:05 +02:00
Ricardo Wurmus
4d639b61cf
gnu: r-mice: Update to 3.10.0.
* gnu/packages/cran.scm (r-mice): Update to 3.10.0.
[propagated-inputs]: Add r-generics.
2020-07-16 10:08:05 +02:00
Ricardo Wurmus
df952ca338
gnu: r-broom: Update to 0.7.0.
* gnu/packages/cran.scm (r-broom): Update to 0.7.0.
[propagated-inputs]: Remove r-nlme and r-reshape2; add r-ellipsis, r-glue, and
r-rlang.
2020-07-16 10:08:05 +02:00
Ricardo Wurmus
ba663a331b
gnu: Add r-conquer.
* gnu/packages/cran.scm (r-conquer): New variable.
2020-07-16 10:08:05 +02:00
Ricardo Wurmus
0091d815ad
gnu: r-rstan: Update to 2.21.1.
* gnu/packages/cran.scm (r-rstan): Update to 2.21.1.
[propagated-inputs]: Add r-rcppparallel and r-v8.
[native-inputs]: Add r-knitr.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
67462c7be9
gnu: r-loo: Update to 2.3.0.
* gnu/packages/cran.scm (r-loo): Update to 2.3.0.
[native-inputs]: Add r-knitr.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
3cafe807b2
gnu: r-rstantools: Update to 2.1.1.
* gnu/packages/cran.scm (r-rstantools): Update to 2.1.1.
[propagated-inputs]: Add r-rcppparallel.
[native-inputs]: Add r-knitr.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
8aff0a206c
gnu: r-iheatmapr: Update to 0.5.0.
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.5.0.
[propagated-inputs]: Remove r-plyr and r-s4vectors.
[native-inputs]: Add r-knitr.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
e9d906748d
gnu: r-quanteda: Update to 2.1.0.
* gnu/packages/cran.scm (r-quanteda): Update to 2.1.0.
[propagated-inputs]: Add r-digest.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
ed8c14589c
gnu: r-nonnest2: Update to 0.5-5.
* gnu/packages/cran.scm (r-nonnest2): Update to 0.5-5.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
215475907a
gnu: r-future: Update to 1.18.0.
* gnu/packages/cran.scm (r-future): Update to 1.18.0.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
e1bfb22e6c
gnu: r-doby: Update to 4.6.7.
* gnu/packages/cran.scm (r-doby): Update to 4.6.7.
[propagated-inputs]: Add r-dplyr and r-ggplot2.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
fbd4582a91
gnu: r-cubature: Update to 2.0.4.1.
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.1.
[native-inputs]: Add r-knitr.
2020-07-16 10:08:04 +02:00
Ricardo Wurmus
1fdd9ebf77
gnu: r-getoptlong: Update to 1.0.2.
* gnu/packages/cran.scm (r-getoptlong): Update to 1.0.2.
2020-07-16 10:08:03 +02:00
Ricardo Wurmus
1b5c263bfc
gnu: r-rcpp: Update to 1.0.5.
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.5.
2020-07-16 10:08:03 +02:00
Peter Lo
170bffff55
gnu: Add r-rselenium.
* gnu/packages/cran.scm (r-rselenium): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-13 12:52:53 +02:00
Peter Lo
719034c1a3
gnu: Add r-wdman.
* gnu/packages/cran.scm (r-wdman): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-13 12:52:53 +02:00
Peter Lo
85d9f9bae6
gnu: Add r-binman.
* gnu/packages/cran.scm (r-binman): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-13 12:52:53 +02:00
Peter Lo
565bf214ad
gnu: Add r-semver.
* gnu/packages/cran.scm (r-semver): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-13 12:52:53 +02:00
Peter Lo
f28c09f2fc
gnu: Add r-rismed.
* gnu/packages/cran.scm (r-rismed): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-13 12:52:53 +02:00
Ludovic Courtès
b0e7b6992f
gnu: Remove ".git" from "https://github/…/….git".
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs.  Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.

* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
2020-07-12 23:08:15 +02:00
Tobias Geerinckx-Rice
b18647db49
gnu: r-processx: Update to 3.4.3.
* gnu/packages/cran.scm (r-processx): Update to 3.4.3.
2020-07-11 14:38:32 +02:00
Tobias Geerinckx-Rice
9debba2025
gnu: r-htmltable: Update to 2.0.1.
* gnu/packages/cran.scm (r-htmltable): Update to 2.0.1.
2020-07-11 14:38:32 +02:00
Tanguy Le Carrour
0dfb340b9e
gnu: r-rjava: Update to 0.9-13.
* gnu/packages/cran.scm (r-rjava): Update to 0.9-13.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-07-08 16:38:28 +03:00
Ricardo Wurmus
82658db3df
gnu: r-dalex: Update to 1.3.0.
* gnu/packages/cran.scm (r-dalex): Update to 1.3.0.
2020-07-04 11:52:33 +02:00
Ricardo Wurmus
2e1cfd24ad
gnu: r-spdata: Update to 0.3.8.
* gnu/packages/cran.scm (r-spdata): Update to 0.3.8.
2020-07-04 11:52:33 +02:00
Ricardo Wurmus
0c2c1b01da
gnu: r-glmmtmb: Update to 1.0.2.1.
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.0.2.1.
2020-07-04 11:52:33 +02:00
Ricardo Wurmus
5db9a14947
gnu: r-abn: Update to 2.2.2.
* gnu/packages/cran.scm (r-abn): Update to 2.2.2.
2020-07-04 11:52:33 +02:00
Ricardo Wurmus
3c45241274
gnu: r-mda: Update to 0.5-2.
* gnu/packages/cran.scm (r-mda): Update to 0.5-2.
2020-07-02 12:45:56 +02:00
Ricardo Wurmus
80897f9622
gnu: r-ingredients: Update to 1.3.0.
* gnu/packages/cran.scm (r-ingredients): Update to 1.3.0.
2020-07-02 12:45:56 +02:00
Ricardo Wurmus
53ea4ae4ce
gnu: r-spdep: Update to 1.1-5.
* gnu/packages/cran.scm (r-spdep): Update to 1.1-5.
[native-inputs]: Add r-knitr.
2020-07-02 12:45:56 +02:00
Ricardo Wurmus
1a4f3739fa
gnu: r-blockmodeling: Update to 1.0.0.
* gnu/packages/cran.scm (r-blockmodeling): Update to 1.0.0.
2020-07-02 12:45:56 +02:00
Ricardo Wurmus
f74542782b
gnu: r-future-apply: Update to 1.6.0.
* gnu/packages/cran.scm (r-future-apply): Update to 1.6.0.
2020-07-02 12:45:56 +02:00
Ricardo Wurmus
aa9cd2d4a3
gnu: r-fs: Update to 1.4.2.
* gnu/packages/cran.scm (r-fs): Update to 1.4.2.
2020-07-02 12:45:56 +02:00
Ricardo Wurmus
ddff76aae0
gnu: r-rdpack: Update to 1.0.0.
* gnu/packages/cran.scm (r-rdpack): Update to 1.0.0.
2020-07-02 12:45:56 +02:00
Ricardo Wurmus
f8c999152e
gnu: r-directlabels: Update to 2020.6.17.
* gnu/packages/cran.scm (r-directlabels): Update to 2020.6.17.
[native-inputs]: Add r-knitr.
2020-06-28 05:46:20 +02:00
Ricardo Wurmus
e9f02d72d3
gnu: r-rgdal: Update to 1.5-12.
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-12.
2020-06-28 05:46:20 +02:00
Ricardo Wurmus
6bbb287a60
gnu: r-flexdashboard: Update to 0.5.2.
* gnu/packages/cran.scm (r-flexdashboard): Update to 0.5.2.
[source]: Delete minified JavaScript files in a snippet.
2020-06-28 05:46:20 +02:00
Ricardo Wurmus
53ba82dda1
gnu: r-rcppparallel: Update to 5.0.2.
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.2.
2020-06-28 05:46:20 +02:00
Ricardo Wurmus
53fd3d5a8f
gnu: r-emmeans: Update to 1.4.8.
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.8.
2020-06-28 05:46:20 +02:00
Ricardo Wurmus
6c8b60acc9
gnu: r-raster: Update to 3.3-7.
* gnu/packages/cran.scm (r-raster): Update to 3.3-7.
2020-06-28 05:46:20 +02:00
Ricardo Wurmus
bfaf6cf1f9
gnu: r-sjlabelled: Update to 1.1.6.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.6.
2020-06-28 05:46:20 +02:00
Ricardo Wurmus
e34f98a4a6
gnu: r-officer: Update to 0.3.12.
* gnu/packages/cran.scm (r-officer): Update to 0.3.12.
2020-06-28 05:46:20 +02:00
Ricardo Wurmus
0d742a0523
gnu: r-ggpubr: Update to 0.4.0.
* gnu/packages/cran.scm (r-ggpubr): Update to 0.4.0.
2020-06-28 05:46:19 +02:00
Ricardo Wurmus
308d91d886
gnu: r-renv: Update to 0.11.0.
* gnu/packages/cran.scm (r-renv): Update to 0.11.0.
2020-06-28 05:46:19 +02:00