futurile/guix-play
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
52,330 Commits 3 Branches 0 Tags 412 MiB
43001931a2
Commit Graph

43312 Commits

Author SHA1 Message Date
Brett Gilio
792c3db553
Revert "gnu: ccls: Adjust indentation" 
This reverts commit 3c80b07a0b.
 2019-12-16 14:04:59 -06:00
Mădălin Ionel Patrașcu
db6bd842aa
gnu: Add python-argh. 
* gnu/packages/python-xyz.scm (python-argh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-16 17:30:33 +01:00
Mădălin Ionel Patrașcu
dbcef44a0b
gnu: Add python-iocapture. 
* gnu/packages/python-xyz.scm (python-iocapture): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-16 17:27:03 +01:00
Jan Nieuwenhuizen
d0a26d0be9
gnu: gash: Update to 0.2.0. 
* gnu/packages/shells.scm (gash): Update to 0.2.0.
 2019-12-16 17:06:07 +01:00
Mathieu Othacehe
46429444d6
gnu: psmisc: Fix cross-compilation. 
* gnu/packages/linux.scm (psmisc)[arguments]: Pass
ac_cv_func_malloc_0_nonnull=yes and ac_cv_func_realloc_0_nonnull=yes options
that are required when cross-compiling.
 2019-12-16 16:45:34 +01:00
Mathieu Othacehe
88ca4029a6
gnu: iw: Fix cross-compilation. 
* gnu/packages/linux.scm (iw)[arguments]: Set PKG_CONFIG and CC variables
correctly for cross-compilation.
 2019-12-16 16:19:39 +01:00
Ricardo Wurmus
c6a7fe7937
gnu: yoshimi: Update to 1.6.1. 
* gnu/packages/music.scm (yoshimi): Update to 1.6.1.
 2019-12-16 15:43:31 +01:00
Pierre Neidhardt
709f839c20
gnu: emacs-helm-fish-completion: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): Update to 0.2.
 2019-12-16 15:35:40 +01:00
Mathieu Othacehe
8c4c5bf86a
Revert "gnu: info-reader: Fix cross-compilation." 
This reverts commit 614a1e3fa2.
This is broken on master with the following error:

output (`/gnu/store/6rnhfi8zrdajbahbq9ii8bpj7mwfcjba-info-reader-6.6') is not
allowed to refer to path
`/gnu/store/ziinjmbnq004866mwjrczsk12wf35qb8-perl-5.30.0' build of
/gnu/store/nnfvr10713khxp1bkbpwi5wxbj8cm4wb-info-reader-6.6.drv failed View
build log at
'/var/log/guix/drvs/nn/fvr10713khxp1bkbpwi5wxbj8cm4wb-info-reader-6.6.drv.bz2'.
 2019-12-16 15:08:08 +01:00
Efraim Flashner
d0ef3a0048
gnu: libreoffice: Update to 6.3.4.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.3.4.2.
 2019-12-16 14:13:16 +02:00
Ricardo Wurmus
223236f6c2
gnu: guile-studio: Update to 0.0.2. 
* gnu/packages/guile-xyz.scm (guile-studio): Update to 0.0.2.
[arguments]: Only include emacs inputs in INPUTS make flag.
 2019-12-16 08:04:18 +01:00
Brett Gilio
3c80b07a0b
gnu: ccls: Adjust indentation 
* gnu/packages/cpp.scm (ccls): Adjust indentation.
 2019-12-16 00:10:14 -06:00
Brett Gilio
2c82d4ad10
gnu: ccls: Configure using -isystem for header files. 
* gnu/packages/cpp.scm (ccls): Configure using -isystem for header files.
[arguments]: Use GCC as a build input for preprocessing and searching GCC
subdirectories, this provides better support for header file completion on
runtime.
[inputs]: Add ncurses for command-line support. Remove LLVM, it is not needed.
[native-inputs]: Move rapidjson from inputs to native-inputs, add GCC.
 2019-12-16 00:06:05 -06:00
Alexandros Theodotou
90ee17cdac
gnu: Add python-sphinx-intl 
* gnu/packages/sphinx.scm (python-sphinx-intl): New variable.

Signed-off-by: Brett Gilio <brettg@posteo.net>
 2019-12-15 22:53:50 -06:00
Nicolas Goaziou
00386d3430
gnu: Add emacs-eww-lnum. 
* gnu/packages/emacs-xyz.scm (emacs-eww-lnum): New variable.
 2019-12-15 23:33:06 +01:00
Ricardo Wurmus
e703f6d8ef
gnu: Add pinfo. 
* gnu/packages/texinfo.scm (pinfo): New variable.
 2019-12-15 23:12:56 +01:00
Ricardo Wurmus
34982a4622
gnu: r-quantreg: Update to 5.54. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.54.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
155d48f6c6
gnu: r-glmnet: Update to 3.0-2. 
* gnu/packages/statistics.scm (r-glmnet): Update to 3.0-2.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
468fb90fdd
gnu: r-sparsem: Update to 1.78. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.78.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
804e0682bf
gnu: r-segmented: Update to 1.1-0. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.1-0.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
d2d7259b47
gnu: r-rmarkdown: Update to 2.0. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.0.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
6c2887e6b2
gnu: r-dbi: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.0.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
2947e330da
gnu: r-plyr: Update to 1.8.5. 
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.5.
[native-inputs]: Move r-rcpp from here...
[propagated-inputs]: ...to here.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
a2e3f27e1f
gnu: r-nlme: Update to 3.1-143. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-143.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
074c698e72
gnu: r-spam: Update to 2.5-1. 
* gnu/packages/cran.scm (r-spam): Update to 2.5-1.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
126f027b99
gnu: r-tidytree: Update to 0.3.1. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.1.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
5f99ffb013
gnu: r-tm: Update to 0.7-7. 
* gnu/packages/cran.scm (r-tm): Update to 0.7-7.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
b744174e7d
gnu: r-fmsb: Update to 0.7.0. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.0.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
d4e8f20705
gnu: r-lmertest: Update to 3.1-1. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-1.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
afc1ff2f08
gnu: r-performance: Update to 0.4.2. 
* gnu/packages/cran.scm (r-performance): Update to 0.4.2.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
f92c0c1efc
gnu: r-multcomp: Update to 1.4-11. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-11.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
31fa45b679
gnu: r-deriv: Update to 4.0. 
* gnu/packages/cran.scm (r-deriv): Update to 4.0.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
cceb86f982
gnu: r-rdpack: Update to 0.11-1. 
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-1.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
98ce8a31f0
gnu: r-renv: Update to 0.9.2. 
* gnu/packages/cran.scm (r-renv): Update to 0.9.2.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
2beb585c8d
gnu: r-sna: Update to 2.5. 
* gnu/packages/cran.scm (r-sna): Update to 2.5.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
a8e8a10a76
gnu: r-tinytex: Update to 0.18. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.18.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
c79e80f81b
gnu: r-mice: Update to 3.7.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.7.0.
 2019-12-15 23:12:02 +01:00
Ricardo Wurmus
a3b51a34f4
gnu: r-broom: Update to 0.5.3. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.3.
 2019-12-15 23:12:02 +01:00
Ricardo Wurmus
c9a0f61069
gnu: r-rmysql: Update to 0.10.18. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.18.
 2019-12-15 23:12:02 +01:00
Ricardo Wurmus
3dc1d43300
gnu: r-amap: Update to 0.8-18. 
* gnu/packages/cran.scm (r-amap): Update to 0.8-18.
 2019-12-15 23:12:02 +01:00
Ricardo Wurmus
0128a9df8f
gnu: r-rgooglemaps: Update to 1.4.5. 
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.
 2019-12-15 23:12:02 +01:00
Brett Gilio
e67118adb4
gnu: Add emacs-hide-mode-line. 
* gnu/packages/emacs-xyz.scm (emacs-hide-mode-line): New variable.
 2019-12-15 16:02:43 -06:00
Giacomo Leidi
099ce5d490
gnu: Add papirus-icon-theme. 
* gnu/packages/gnome-xyz.scm (papirus-icon-theme): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-15 22:54:58 +01:00
nixo
5d1601eab5
gnu: criu: Update to 3.13. 
* gnu/packages/virtualization.scm (criu): Update to 3.13.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-15 22:54:58 +01:00
Leo Prikler
4dbd704d5d
gnu: Add lolcat 
* gnu/packages/games.scm (lolcat): New package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-15 22:54:58 +01:00
Ludovic Courtès
6704e88d42
gnu: guile-gcrypt: Update to 0.2.1. 
* gnu/packages/gnupg.scm (guile-gcrypt): Update to 0.2.1.
 2019-12-15 22:54:57 +01:00
Brett Gilio
0fce0b2eef
gnu: emacs-telega: Add comment about obtaining version. 
* gnu/packages/emacs-xyz.scm (emacs-telega): Add comment about obtaining version.
 2019-12-15 15:30:16 -06:00
Nicolas Goaziou
6b714d8d14
gnu: emacs-htmlize: Update to 1.55. 
* gnu/packages/emacs-xyz.scm (emacs-htmlize): Update to 1.55.
 2019-12-15 22:25:41 +01:00
Brett Gilio
638850e68c
gnu: emacs-helm-org: Update to 1.0-2. 
* gnu/packages/emacs-xyz.scm (emacs-helm-org): Update to 1.0-2.
 2019-12-15 15:22:21 -06:00
Brett Gilio
426ab00aae
gnu: emacs-helm: Update to 3.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.6.0.
 2019-12-15 15:19:31 -06:00
Brett Gilio
fb4b5d2ea9
gnu: emacs-writeroom: Update to 3.9. 
* gnu/packages/emacs-xyz.scm (emacs-writeroom): Update to 3.9.
 2019-12-15 15:15:22 -06:00
Brett Gilio
467ad2120a
gnu: emacs-rainbow-delimiters: Update to 2.1.4. 
* gnu/packages/emacs-xyz.scm (emacs-rainbow-delimiters): Update to 2.1.4.
 2019-12-15 15:13:42 -06:00
Vagrant Cascadian
bc685e1ca3
gnu: diffoscope: Add support for zstd compression. 
* gnu/packages/diffoscope (diffoscope)[native-inputs]: Add zstd.
  [arguments]: Add add-known-tools phase with support for zstd.
 2019-12-15 13:01:10 -08:00
Brett Gilio
5487ddac22
gnu: emacs-find-file-in-project: Update to 5.7.7. 
* gnu/packages/emacs-xyz.scm (emacs-find-file-in-project): Update to 5.7.7.
[arguments]: Modify tests to use ert.
 2019-12-15 14:58:18 -06:00
Brett Gilio
317cc18180
gnu: emacs-elfeed: Update to 3.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed): Update to 3.3.0.
 2019-12-15 14:44:35 -06:00
Brett Gilio
e3c4fcaae3
gnu: emacs-org-trello: Update to 0.8.1. 
* gnu/packages/emacs-xyz.scm (emacs-org-trello): Update to 0.8.1.
 2019-12-15 14:33:08 -06:00
Brett Gilio
503f9aadc4
gnu: emacs-jedi: Update to 0.2.8. 
* gnu/packages/emacs-xyz.scm (emacs-jedi): Update to 0.2.8.
 2019-12-15 14:32:48 -06:00
Brett Gilio
0da921dce7
gnu: emacs-ob-ipython: Update to 20180224. 
* gnu/packages/emacs-xyz.scm (emacs-ob-ipython): Update to 20180224.
 2019-12-15 14:15:52 -06:00
Brett Gilio
1bd94e3a65
gnu: emacs-rich-minority: Update to 1.0.3. 
* gnu/packages/emacs-xyz.scm (emacs-rich-minority): Update to 1.0.3.
 2019-12-15 14:11:39 -06:00
Brett Gilio
44e7222bf7
gnu: emacs-paren-face: Update to 1.0.4. 
* gnu/packages/emacs-xyz.scm (emacs-paren-face): Update to 1.0.4.
 2019-12-15 14:09:25 -06:00
Brett Gilio
6694b67f4f
gnu: emacs-undercover: Update to 0.6.1. 
* gnu/packages/emacs-xyz.scm (emacs-undercover): Update to 0.6.1.
 2019-12-15 14:07:26 -06:00
Brett Gilio
12bf15ffe4
gnu: emacs-fill-column-indicator: Update to 1.90. 
* gnu/packages/emacs-xyz.scm (emacs-fill-column-indicator): Update to 1.90.
 2019-12-15 14:00:06 -06:00
Brett Gilio
00895524ec
gnu: emacs-direnv: Update to 2.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-direnv): Update to 2.0.0.
 2019-12-15 13:52:58 -06:00
Brett Gilio
b425426236
gnu: emacs-async: Update to 1.9.4. 
* gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.4.
 2019-12-15 13:50:19 -06:00
Brett Gilio
9a27551b39
gnu: emacs-doom-modeline: Update to 2.8.2. 
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.2.
 2019-12-15 13:43:46 -06:00
Vagrant Cascadian
6a65185ee4
gnu: diffoscope: Update to 133. 
* gnu/packages/diffoscope (diffoscope): Update to 133.
 2019-12-15 10:19:04 -08:00
Carlo Zancanaro
514001e9ce
gnu: abcl: Update to 1.6.0. 
* gnu/packages/java.scm (abcl): Update to 1.6.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-12-15 18:44:43 +02:00
Mathieu Othacehe
a13116b60c
gnu: texinfo: Add missing include. 
* gnu/packages/texinfo.scm (info-reader): Fix missing include, introduced by
f5d670606354728a453b8cc962c4f85516007d13.
 2019-12-15 17:11:18 +01:00
Pierre Neidhardt
97115892b9
gnu: Add theorafile. 
* gnu/packages/video.scm (theorafile): New variable.
 2019-12-15 16:21:19 +01:00
Mathieu Othacehe
614a1e3fa2
gnu: info-reader: Fix cross-compilation. 
* gnu/packages/texinfo.scm (info-reader)[arguments]: Add keep-only-info-reader
phase to inherited texinfo package phases, so that fix-cross-configure phase
is preserved.
 2019-12-15 15:48:15 +01:00
Ricardo Wurmus
6e10ac0780
gnu: r-destiny: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
b4ee414880
gnu: r-siggenes: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
4efdac562b
gnu: r-bumphunter: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
dfd4287cba
gnu: r-minfi: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
b57cffb974
gnu: r-methylumi: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
8f7bc872e1
gnu: r-lumi: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
a2877d6970
gnu: r-linnorm: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
1b890c3231
gnu: r-ioniser: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
a18f325e0a
gnu: r-triform: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
9b72bbf784
gnu: r-varianttools: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
9f218627d6
gnu: r-heatplus: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
c245ec3d49
gnu: r-gosemsim: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
5ed767521c
gnu: r-anota: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
869965df1c
gnu: r-sigpathway: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
b4e1268c7b
gnu: r-fgsea: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
166b3c2da6
gnu: r-dose: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
0654a9bc3b
gnu: r-enrichplot: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
08c01b7e0e
gnu: r-clusterprofiler: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
6374984a20
gnu: r-mlinterfaces: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
fc4a9dd579
gnu: r-annaffy: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
4ed18ddc0f
gnu: r-a4core: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
102b982cbe
gnu: r-a4classif: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
d6859c7c9b
gnu: r-a4preproc: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
977a7802c1
gnu: r-a4reporting: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
85c945aa97
gnu: r-a4base: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
344eb4c404
gnu: r-a4: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
aef4b34669
gnu: r-abseqr: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
32b471f4a7
gnu: r-bacon: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
6dfe5056c9
gnu: r-rgadem: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
35a1b3ec4c
gnu: r-motiv: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0.
[propagated-inputs]: Add r-genomicranges.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
dda936ca9a
gnu: r-motifstack: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0.
[propagated-inputs]: Add r-ggplot2.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
e89f16e646
gnu: r-genomicscores: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
36aecb2105
gnu: r-atacseqqc: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.1.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
4997e0254a
gnu: r-gofuncr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
307667c4ef
gnu: r-abaenrichment: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
3a731c8334
gnu: r-annotationfuncs: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
eda4908556
gnu: r-annotationtools: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
50e6f76278
gnu: r-allelicimbalance: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
3a35d27450
gnu: r-aucell: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0.
[propagated-inputs]: Add r-biocgenerics and r-s4vectors.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
ca7192a1c9
gnu: r-ebimage: Update to 4.28.1. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
3796e2442b
gnu: r-yamss: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
cf0a1cb3b4
gnu: r-gtrellis: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.18.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
4f8e0487fc
gnu: r-somaticsignatures: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.22.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
580e434267
gnu: r-yapsa: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.12.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
2f90bab8d1
gnu: r-gcrma: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.58.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
a87aa2ff5a
gnu: r-simpleaffy: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.62.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
87942b74c6
gnu: r-yaqcaffy: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.46.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
eb697ff5bb
gnu: r-quantro: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.20.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
94fdea1267
gnu: r-yarn: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.12.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
f0dd0fec40
gnu: r-roar: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.22.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
1f0101ae01
gnu: r-xbseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.18.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
a07ee2584a
gnu: r-massspecwavelet: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.52.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
4fb52345b2
gnu: r-xcms: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.1.
[propagated-inputs]: Add r-iranges.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
92f40538d3
gnu: r-wrench: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.4.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
25db5611e2
gnu: r-wiggleplotr: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.10.1.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
1a2569e4cc
gnu: r-widgettools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.64.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
316bcd07a8
gnu: r-webbioc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.58.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
18b93e0350
gnu: r-zfpkm: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
c5a4c5a1ce
gnu: r-rbowtie2: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
82d87ce02a
gnu: r-progeny: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
4f0d858841
gnu: r-arrmnormalization: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
97e317007c
gnu: r-biocfilecache: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
049de95de7
gnu: r-iclusterplus: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
02684becc9
gnu: r-rbowtie: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
2cebc5d135
gnu: r-sgseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
3dd2450e65
gnu: r-rhisat2: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
a15e52ec78
gnu: r-quasr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
11db82b07c
gnu: r-rqc: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
a9e5145c32
gnu: r-birewire: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
8d766270c4
gnu: r-birta: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
643aaf7eaf
gnu: r-ropls: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
7d29dc9c7b
gnu: r-biosigner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
700072565f
gnu: r-annotatr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
4390788ea2
gnu: r-rsubread: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
482ba0b3ed
gnu: r-flowutils: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
8ad6b23f68
gnu: r-consensusclusterplus: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
b2a2f32130
gnu: r-flowcore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
8042087804
gnu: r-flowmeans: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
ba71567acd
gnu: r-flowsom: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
4930a89ad5
gnu: r-mixomics: Update to 6.10.6. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
 2019-12-15 15:39:06 +01:00