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Author SHA1 Message Date
Maxim Cournoyer
05be458f02
gnu: Add emacs-pde. 
* gnu/packages/emacs-xyz.scm (emacs-pde): New variable.

Change-Id: Icab5d8acf9d441bb4a832a82e75432d64cc77ba7
 2024-01-18 22:41:02 -05:00
Maxim Cournoyer
33783e3695
gnu: perl-b-keywords: Update to 1.26. 
* gnu/packages/perl.scm (perl-b-keywords): Update to 1.26.

Change-Id: I3fdb9acf9f257ff9583179e29b2e6a26104b7e0d
 2024-01-18 22:10:58 -05:00
Maxim Cournoyer
90b1fe57d0
gnu: emacs: Patch awk, find, sed and sh commands. 
Before this change, using Emacs in a pure environment, e.g. 'guix shell --pure
emacs', would cause problems such as:

  jka-compr-insert-file-contents: Uncompression program ‘sh’ not found

And other problems were found requiring the other tools.

* gnu/packages/emacs.scm (emacs-minimal) [arguments]: Extend the
patch-program-file-names phase.
[inputs]: Add findutils, gawk and sed.

Series-changes: 2
 - Patch references in place instead of wrapping via PATH

Change-Id: Ifb4fe2fc12ddc9eae387adb3da3f7821fab78e65
 2024-01-18 22:10:58 -05:00
Maxim Cournoyer
d97a6c9ba7
gnu: qt-creator: Update to 12.0.1. 
* gnu/packages/qt.scm (qt-creator): Update to 12.0.1.
[source]: Adjust snippet for the upstream removal of bundled libraries under
the unittest directory.
[arguments]: Also wrap kcachegrind tool in wrap-bin phase.
[inputs]: Add kcachegrind.

Change-Id: I63616d532be2f1a603fcee0841f493d83a138302
 2024-01-18 22:10:33 -05:00
Maxim Cournoyer
7d4a4ded8d
gnu: kcachegrind: Update to 23.08.4. 
* gnu/packages/kde.scm (kcachegrind): Update to 23.08.4.

Change-Id: I5cd0401c61325b274bfcb5c4bc914d8fe0325388
 2024-01-18 22:10:33 -05:00
Maxim Cournoyer
f3fdb4e041
gnu: mpv: Propagate most libraries. 
This is needed when packages lookup the mpv library via pkg-config, such as
done by plasmatube.

Prior to this change, the following would fail (this is what CMake's
'pkg_check_modules' does):

  $ guix shell --pure pkg-config mpv \
    -- pkg-config --print-errors --short-errors --exists mpv
  Package 'wayland-client', required by 'mpv', not found

* gnu/packages/video.scm (mpv)
[inputs]: Move alsa-lib, ffmpeg, jack-1, libass, libbluray, libcaca,
libcdio-paranoia, libdvdnav, libjpeg-turbo, libplacebo, libva, libvdpau,
libx11, libxext, libxinerama, libxpresent, libxrandr, libxscrnsaver, lua-5.2,
mesa, pulseaudio, shaderc, wayland, wayland-protocols, zimg and zlib to...
[propagated-inputs]: ... here.

Change-Id: Ia0cd4e33a8b4df4b060546c979d00be0b2b3977e
 2024-01-18 20:54:18 -05:00
Maxim Cournoyer
119f4cad81
gnu: libdvdnav: Propagate libdvdread. 
* gnu/packages/video.scm (libdvdnav) [inputs]: Move libdvdread to...
[propagated-inputs]: ... here.

Change-Id: Ifea887985f27ed1dec2c56ce2f5291862f011bed
 2024-01-18 20:54:18 -05:00
Maxim Cournoyer
4c3794f82d
gnu: libplacebo: Propagate lcms, shaderc and vulkan-loader. 
* gnu/packages/video.scm (libplacebo)
[inputs]: Move lcms, shaderc and vulkan-loader to...
[propagated-inputs]: ... here.

Change-Id: If426be3b4e32632bb775485e0a8c517e09ccbeaf
 2024-01-18 20:54:18 -05:00
Maxim Cournoyer
ee1521f67b
gnu: ktextaddons: Update to 1.5.3. 
* gnu/packages/kde-frameworks.scm (ktextaddons): Update to 1.5.3.
[inputs]: Add kio, ksyntaxhighlighting and sonnet.

Change-Id: I2c09d28f90dfcd43bf3081e2174405837798b29f
 2024-01-18 20:54:18 -05:00
Maxim Cournoyer
200d8cdf8e
gnu: pulseaudio-qt: Update to 1.4.0. 
* gnu/packages/kde-frameworks.scm (pulseaudio-qt): Update to 1.4.0.

Change-Id: I6a7a60a6da03af5591724596509292e09616ca7d
 2024-01-18 20:54:17 -05:00
Maxim Cournoyer
a413b85918
gnu: kdav: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kdav): Update to 5.114.0.

Change-Id: Ieceba23a043909cd88018e3f2e310d0483c7f3f8
 2024-01-18 20:54:17 -05:00
Maxim Cournoyer
b7734daf51
gnu: kross: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kross): Update to 5.114.0.

Change-Id: Icbfcae279178923737634f5c371e440f8c69ccd8
 2024-01-18 20:54:17 -05:00
Maxim Cournoyer
5383338284
gnu: kmediaplayer: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kmediaplayer): Update to 5.114.0.

Change-Id: I2269af8b4f7362c0832e55f3e35d5e0344e0a43c
 2024-01-18 20:54:17 -05:00
Maxim Cournoyer
cbd15b0379
gnu: kjsembed: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kjsembed): Update to 5.114.0.

Change-Id: I536a0cc5da65d2fc6f17ab92a3904550a9bd7c1e
 2024-01-18 20:54:17 -05:00
Maxim Cournoyer
b932ed759f
gnu: kjs: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kjs): Update to 5.114.0.

Change-Id: Iea79bac273ba449f04e4b3bec0bffcec54d2b96d
 2024-01-18 20:54:16 -05:00
Maxim Cournoyer
3ad3080d26
gnu: khtml: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (khtml): Update to 5.114.0.

Change-Id: Ibba65a7076df3c056aa2baa99f49ef24337b9f2a
 2024-01-18 20:54:16 -05:00
Maxim Cournoyer
0fc47656fd
gnu: kdelibs4support: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kdelibs4support): Update to 5.114.0.

Change-Id: I29f67e5b2810a4f167fdef52ecf28424dc17e402
 2024-01-18 20:54:16 -05:00
Maxim Cournoyer
4127c0690a
gnu: kde-frameworkintegration: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kde-frameworkintegration): Update to 5.114.0.

Change-Id: I8faea27c4f5f5cede485f709ce4c7d50204ec7ff
 2024-01-18 20:54:16 -05:00
Maxim Cournoyer
061e241c75
gnu: purpose: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (purpose): Update to 5.114.0.

Change-Id: I0c952bb0951617f16f579af6732468a946518374
 2024-01-18 20:54:16 -05:00
Maxim Cournoyer
b6c2d8ec02
gnu: plasma-framework: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (plasma-framework): Update to 5.114.0.

Change-Id: I2d9db901626a8037705c586c3eae4f7f751f2fd5
 2024-01-18 20:54:16 -05:00
Maxim Cournoyer
fd35606ce0
gnu: kxmlrpcclient: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kxmlrpcclient): Update to 5.114.0.

Change-Id: Ibdc7488087d631fde2b405cdc161b93d3f1c3713
 2024-01-18 20:54:15 -05:00
Maxim Cournoyer
f45c711dc0
gnu: kxmlgui: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kxmlgui): Update to 5.114.0.

Change-Id: Id8dc85b36024ef33c01bc4bdab6172a543e79173
 2024-01-18 20:54:15 -05:00
Maxim Cournoyer
eb184b5ffb
gnu: kwallet: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kwallet): Update to 5.114.0.

Change-Id: I468f97917e8a4b4fbdb356a32a400b181c152413
 2024-01-18 20:54:15 -05:00
Maxim Cournoyer
2ce93c34b2
gnu: ktextwidgets: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (ktextwidgets): Update to 5.114.0.

Change-Id: Ieb159a19037880f38d10592d55e2d47aa27d8d7c
 2024-01-18 20:54:15 -05:00
Maxim Cournoyer
7fc3675845
gnu: ktexteditor: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (ktexteditor): Update to 5.114.0.

Change-Id: Ib2d04eb6f6ffa2fc4d89e79e49f782270e2d07f9
 2024-01-18 20:54:15 -05:00
Maxim Cournoyer
a9c8b5cb2a
gnu: kservice: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kservice): Update to 5.114.0.

Change-Id: I65c0ccaac091321f358fcad07608ec5f505c2c71
 2024-01-18 20:54:15 -05:00
Maxim Cournoyer
e77bd2caa2
gnu: krunner: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (krunner): Update to 5.114.0.

Change-Id: I4ea27fceba5b9b3969770ccfd81bcdff93841adc
 2024-01-18 20:54:14 -05:00
Maxim Cournoyer
1155009dae
gnu: kpeople: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kpeople): Update to 5.114.0.

Change-Id: Ief4ac2ae3fb60ffda4e631502dfc2b239fda8cd7
 2024-01-18 20:54:14 -05:00
Maxim Cournoyer
81d390c9a6
gnu: kparts: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kparts): Update to 5.114.0.

Change-Id: Id5b67bc5e773708e83810acb2a31b11468a42023
 2024-01-18 20:54:14 -05:00
Maxim Cournoyer
e3f61bd2c3
gnu: knotifyconfig: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (knotifyconfig): Update to 5.114.0.

Change-Id: I83e98db9f4398ad3fcd223e057d0a875f8716480
 2024-01-18 20:54:14 -05:00
Maxim Cournoyer
0e8205f8ab
gnu: knewstuff: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (knewstuff): Update to 5.114.0.

Change-Id: If42c93a98323425d7ac249b11faf08aa410230d2
 2024-01-18 20:54:14 -05:00
Maxim Cournoyer
427ea6028a
gnu: kio: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kio): Update to 5.114.0.

Change-Id: Ie2e9276b2cc5fb1d936713db398ff0659ca382f8
 2024-01-18 20:54:13 -05:00
Maxim Cournoyer
6ea1c431c6
gnu: kinit: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kinit): Update to 5.114.0.

Change-Id: I3656a7e17d36dc5d038e266c24e561aefff50873
 2024-01-18 20:54:13 -05:00
Maxim Cournoyer
076e50d147
gnu: kiconthemes: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kiconthemes): Update to 5.114.0.

Change-Id: I0612a4495adbbfad6c29baabb486fc7ceb19c5a1
 2024-01-18 20:54:13 -05:00
Maxim Cournoyer
c999077d88
gnu: kglobalaccel: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kglobalaccel): Update to 5.114.0.

Change-Id: I40f3e0dc3c52e44c600a978b1e3a496a3111d1eb
 2024-01-18 20:54:13 -05:00
Maxim Cournoyer
167267a8f0
gnu: kemoticons: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kemoticons): Update to 5.114.0.

Change-Id: I9bc1b45afa0ee4a7a4c132d77b83871aecfa978c
 2024-01-18 20:54:13 -05:00
Maxim Cournoyer
9b776f3f21
gnu: kdesu: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kdesu): Update to 5.114.0.

Change-Id: Ib59f2d5d0e614d3643b638c005d7c5ecbcff9706
 2024-01-18 20:54:13 -05:00
Maxim Cournoyer
6b1e7b75e7
gnu: kdesignerplugin: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kdesignerplugin): Update to 5.114.0.

Change-Id: I7fc685a3bb73cf80c43279e1f6d1b90dcaca2296
 2024-01-18 20:54:12 -05:00
Maxim Cournoyer
3489fcc8ab
gnu: kded: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kded): Update to 5.114.0.

Change-Id: I6c43a6bc02b7dd7ebdb4e5693a1f4be0b654c196
 2024-01-18 20:54:12 -05:00
Maxim Cournoyer
1e6dd07ca4
gnu: kdeclarative: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kdeclarative): Update to 5.114.0.

Change-Id: I8dd6049ed8d876a7573f527fb802bb04f6be8edb
 2024-01-18 20:54:12 -05:00
Maxim Cournoyer
8f55a10874
gnu: kconfigwidgets: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kconfigwidgets): Update to 5.114.0.

Change-Id: I6bf40f9b33eb0fa0094bb21fbd0b0f9d1fe1d63c
 2024-01-18 20:54:12 -05:00
Maxim Cournoyer
77b3083091
gnu: kcmutils: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kcmutils): Update to 5.114.0.

Change-Id: I5ad52ac29acbb08a7cc8d3d21d62e1849d6ed7f7
 2024-01-18 20:54:12 -05:00
Maxim Cournoyer
c599dd31f7
gnu: kbookmarks: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kbookmarks): Update to 5.114.0.

Change-Id: I6a5ceb5dea8c5e0daccc353eb1420a3c2751cffc
 2024-01-18 20:54:12 -05:00
Maxim Cournoyer
7d3ad4a706
gnu: kactivities-stats: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kactivities-stats): Update to 5.114.0.

Change-Id: Ic5af449344df1ad2fe46c0f8277f685cfca1a3ce
 2024-01-18 20:54:11 -05:00
Maxim Cournoyer
8225e7f375
gnu: baloo: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (baloo): Update to 5.114.0.

Change-Id: Idfe4732f3dc9c74b9d22dc2ab7e13ee39e63f843
 2024-01-18 20:54:11 -05:00
Maxim Cournoyer
3ce4b6735e
gnu: syndication: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (syndication): Update to 5.114.0.

Change-Id: I3faf71684140fa5e02335a886af39b529879c4ab
 2024-01-18 20:54:11 -05:00
Maxim Cournoyer
64ea017379
gnu: kunitconversion: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kunitconversion): Update to 5.114.0.

Change-Id: I43c89832d70d92bf15295b0db235fc70a9a37b99
 2024-01-18 20:54:11 -05:00
Maxim Cournoyer
ee6db51289
gnu: kpty: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kpty): Update to 5.114.0.

Change-Id: Id4561e4d42e86c981c7c6a723329d03ef071d8e9
 2024-01-18 20:54:11 -05:00
Maxim Cournoyer
88f1c3b1b8
gnu: kpackage: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kpackage): Update to 5.114.0.

Change-Id: I035a5507e33c1e9dde933166a5a48ab67b766157
 2024-01-18 20:54:10 -05:00
Maxim Cournoyer
0c46d42d0b
gnu: knotifications: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (knotifications): Update to 5.114.0.

Change-Id: I098cb0638d659609f639ac4723842d504337f0c2
 2024-01-18 20:54:10 -05:00
Maxim Cournoyer
081433f523
gnu: kjobwidgets: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kjobwidgets): Update to 5.114.0.

Change-Id: Id68b2d408ae7b63d01da02af593d9df0c1af5bc7
 2024-01-18 20:54:10 -05:00
Maxim Cournoyer
dd2f52406f
gnu: kimageformats: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kimageformats): Update to 5.114.0.

Change-Id: I68d81959a47972dcc457a2e7658c4b6211c3b6f4
 2024-01-18 20:54:10 -05:00
Maxim Cournoyer
9dd20cf54b
gnu: kimageannotator: Update to 0.7.0. 
* gnu/packages/kde-frameworks.scm (kimageannotator): Update to 0.7.0.

Change-Id: I75d29a31f371b4cfadf17c5cd37ad3e2a8608cc4
 2024-01-18 20:54:10 -05:00
Maxim Cournoyer
a38f44c8ae
gnu: kfilemetadata: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kfilemetadata): Update to 5.114.0.

Change-Id: I852eece50a378e46c34f9e2bf7b502c35d773ad6
 2024-01-18 20:54:09 -05:00
Maxim Cournoyer
d70ee5ca25
gnu: kdoctools: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kdoctools): Update to 5.114.0.

Change-Id: Ief99d7f07516aacaa104d70d495a4d6e6b5b3b17
 2024-01-18 20:54:09 -05:00
Maxim Cournoyer
d20cfbe9cd
gnu: kcrash: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kcrash): Update to 5.114.0.

Change-Id: I0a3c922cae3641c10ef4408cdbe55d268d4c6273
 2024-01-18 20:54:09 -05:00
Maxim Cournoyer
3e70116df3
gnu: kcontacts: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kcontacts): Update to 5.114.0.

Change-Id: Id0e30156160b40fa7dabfa84b8b87410461a2ce3
 2024-01-18 20:54:09 -05:00
Maxim Cournoyer
324bfcd67f
gnu: kcompletion: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kcompletion): Update to 5.114.0.

Change-Id: I67e76b22cd43fc4fbdb361e6b574be4bb229d530
 2024-01-18 20:54:09 -05:00
Maxim Cournoyer
690a347bdb
gnu: kauth: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kauth): Update to 5.114.0.

Change-Id: Ieaa7dbd7340c850928ca6d128ca66f8c0973fba8
 2024-01-18 20:54:09 -05:00
Maxim Cournoyer
75d5ccce4c
gnu: kactivities: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kactivities): Update to 5.114.0.

Change-Id: Id56c1a54b06c86eb92ff4db3cd03de98378088e8
 2024-01-18 20:54:08 -05:00
Maxim Cournoyer
692e642efd
gnu: libkdcraw: Update to 23.08.4. 
* gnu/packages/kde-frameworks.scm (libkdcraw): Update to 23.08.4.

Change-Id: If81294164a82905ed5d9ed5c57ffde0fafd66b43
 2024-01-18 20:54:08 -05:00
Maxim Cournoyer
26e82d61cb
gnu: threadweaver: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (threadweaver): Update to 5.114.0.

Change-Id: I30ea4d0202a5cccbf435cac8c0588960885b7a3a
 2024-01-18 20:54:08 -05:00
Maxim Cournoyer
4e037f5aa2
gnu: sonnet: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (sonnet): Update to 5.114.0.

Change-Id: I407f10dbbaccaa8b4ef5951d296d021f8c5c3a68
 2024-01-18 20:54:08 -05:00
Maxim Cournoyer
3128cc790c
gnu: solid: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (solid): Update to 5.114.0.

Change-Id: I7ef74022a8e2174756c3e8fd27ba6f608715f05d
 2024-01-18 20:54:08 -05:00
Maxim Cournoyer
553ed8b58d
gnu: qqc2-desktop-style: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (qqc2-desktop-style): Update to 5.114.0.

Change-Id: Id079529dccbd1322b863bd8c71cfe997d7c24748
 2024-01-18 20:54:07 -05:00
Maxim Cournoyer
4c1c2c4f9c
gnu: prison: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (prison): Update to 5.114.0.

Change-Id: I7ccbbd88f7081c9ee5b8e9cd12f8983c30c7be61
 2024-01-18 20:54:07 -05:00
Maxim Cournoyer
13a4368b46
gnu: oxygen-icons: Update to 5.112.0. 
* gnu/packages/kde-frameworks.scm (oxygen-icons): Update to 5.112.0.

Change-Id: Ibaadb681503cc0b95a1b48c4a799f03783f92eb0
 2024-01-18 20:54:07 -05:00
Maxim Cournoyer
3f94182db4
gnu: networkmanager-qt: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (networkmanager-qt): Update to 5.114.0.

Change-Id: I44ec1968f2c02e8f3393899330243dc7ff1e6f65
 2024-01-18 20:54:07 -05:00
Maxim Cournoyer
24e6ea1b8e
gnu: modemmanager-qt: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (modemmanager-qt): Update to 5.114.0.

Change-Id: Ife75d4aafca50fade12b9ebe6137fdc834147c6c
 2024-01-18 20:54:07 -05:00
Maxim Cournoyer
4c2b0e1eaf
gnu: kwindowsystem: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.114.0.

Change-Id: I23c66be3d7add7c05c87f518e330ad95eb524ea0
 2024-01-18 20:54:06 -05:00
Maxim Cournoyer
f44ee6fc63
gnu: kwidgetsaddons: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kwidgetsaddons): Update to 5.114.0.

Change-Id: I69be7e9b2d5e756d75b47b259882c46ce3d1ae06
 2024-01-18 20:54:06 -05:00
Maxim Cournoyer
49304950a0
gnu: kwayland: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kwayland): Update to 5.114.0.

Change-Id: I252c9f6d26da9fc998b10e55499f78d9cb43b5a8
 2024-01-18 20:54:06 -05:00
Maxim Cournoyer
63727439a5
gnu: plasma-wayland-protocols: Update to 1.12.0. 
* gnu/packages/kde-frameworks.scm (plasma-wayland-protocols): Update to 1.12.0.

Change-Id: I5e886bbd090e5432e6551f8be69ad91b03824649
 2024-01-18 20:54:06 -05:00
Maxim Cournoyer
c870fa0e0b
gnu: ksyntaxhighlighting: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (ksyntaxhighlighting): Update to 5.114.0.

Change-Id: I90d63f651f7dc16336b37431d699aed9b02e1ff5
 2024-01-18 20:54:06 -05:00
Maxim Cournoyer
9b3e689926
gnu: kplotting: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kplotting): Update to 5.114.0.

Change-Id: Ida6140065925b3dffcb3022f7283fc68a90625eb
 2024-01-18 20:54:06 -05:00
Maxim Cournoyer
45e1f842ed
gnu: kitemviews: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kitemviews): Update to 5.114.0.

Change-Id: Ibff883d664e0f9d976852316eac5144069fc97f5
 2024-01-18 20:54:05 -05:00
Maxim Cournoyer
865ea18fc7
gnu: kitemmodels: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kitemmodels): Update to 5.114.0.

Change-Id: I1b0c318079874496acfa943a6616514fbe653e38
 2024-01-18 20:54:05 -05:00
Maxim Cournoyer
f0829c06ac
gnu: kirigami: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kirigami): Update to 5.114.0.

Change-Id: I27a8d185ee879018a1b16c4e08602a026150bc9b
 2024-01-18 20:54:05 -05:00
Maxim Cournoyer
3ebe3396ac
gnu: kidletime: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kidletime): Update to 5.114.0.

Change-Id: Id05217d7bbb252c4e62233b5a91461134405cdb1
 2024-01-18 20:54:05 -05:00
Maxim Cournoyer
f159d5bb97
gnu: ki18n: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (ki18n): Update to 5.114.0.

Change-Id: Ief495c01f861dd44944b90390587d3a423f2763e
 2024-01-18 20:54:05 -05:00
Maxim Cournoyer
a7afeaefc5
gnu: kholidays: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kholidays): Update to 5.114.0.

Change-Id: I37d6006cdefa134364a60a85859505c2d451b138
 2024-01-18 20:54:04 -05:00
Maxim Cournoyer
51ffddf04b
gnu: kguiaddons: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kguiaddons): Update to 5.114.0.

Change-Id: I83c5d479f8b5136fce53ad5f7949a34d6be4ac2c
 2024-01-18 20:54:04 -05:00
Maxim Cournoyer
5ad4fc6032
gnu: kdnssd: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kdnssd): Update to 5.114.0.

Change-Id: I9cd33b628527d6aec1594ab09ec1f3272c224f86
 2024-01-18 20:54:04 -05:00
Maxim Cournoyer
d66a1d4f1b
gnu: kdbusaddons: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kdbusaddons): Update to 5.114.0.

Change-Id: I96154ee171d5c6ee95e6a5b4c15af0004d60cda4
 2024-01-18 20:54:04 -05:00
Maxim Cournoyer
c2bccf47c4
gnu: kcoreaddons: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kcoreaddons): Update to 5.114.0.

Change-Id: I59a8f002cf345abb12db245d26afcaf63fbe5f1e
 2024-01-18 20:54:04 -05:00
Maxim Cournoyer
2b1d53273a
gnu: kconfig: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kconfig): Update to 5.114.0.

Change-Id: Icd4f11af8bc2769c2e30b5984e329aa9f230db51
 2024-01-18 20:54:04 -05:00
Maxim Cournoyer
b189ee8498
gnu: kcolorpicker: Update to 0.3.0. 
* gnu/packages/kde-frameworks.scm (kcolorpicker): Update to 0.3.0.

Change-Id: I21f0911bd1a3ce50646befa2298af286c15f5b90
 2024-01-18 20:54:03 -05:00
Maxim Cournoyer
9a74513573
gnu: kcodecs: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kcodecs): Update to 5.114.0.

Change-Id: I327331ff38b1577a754b67acc508d7b7efb346ff
 2024-01-18 20:54:03 -05:00
Maxim Cournoyer
32f97bc7eb
gnu: kcalendarcore: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kcalendarcore): Update to 5.114.0.

Change-Id: I2b05028fff57c17c2b568c45b8f11ff715b9c386
 2024-01-18 20:54:03 -05:00
Maxim Cournoyer
db6498d593
gnu: karchive: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (karchive): Update to 5.114.0.

Change-Id: I188acbcb508da7536efdb688d3518aca90decfde
 2024-01-18 20:54:03 -05:00
Maxim Cournoyer
f2d338f8eb
gnu: kapidox: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kapidox): Update to 5.114.0.

Change-Id: Ie09ef507ba6f990f5c47880653b2ac27dec97ce3
 2024-01-18 20:54:03 -05:00
Maxim Cournoyer
c3cb6eb740
gnu: breeze-icons: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (breeze-icons): Update to 5.114.0.

Change-Id: I685b598ffd72ceb918dd222473a21c439e71cc21
 2024-01-18 20:54:03 -05:00
Maxim Cournoyer
e1fec8139c
gnu: bluez-qt: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (bluez-qt): Update to 5.114.0.

Change-Id: Ic20fcd9e84ced6fbf7e416b1d19a1a98a7dc3cc2
 2024-01-18 20:54:02 -05:00
Maxim Cournoyer
6db3e23c80
gnu: attica: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (attica): Update to 5.114.0.

Change-Id: I6dc397de900b38575a6c2cd2074110a235e0b022
 2024-01-18 20:54:02 -05:00
Maxim Cournoyer
f0744db516
gnu: phonon: Update to 4.12.0. 
* gnu/packages/kde-frameworks.scm (phonon): Update to 4.12.0.
[native-inputs]: Add appstream.
[inputs]: Add glib, pulseaudio.
[configure-flags]: Remove -DPHONON_BUILD_PHONON4QT5=ON; add
-DPHONON_BUILD_QT6=OFF.

Change-Id: Ia8ba388cf0a40488edb541dbbaeaf6df1473d500
 2024-01-18 20:54:02 -05:00
Maxim Cournoyer
a7c099661c
gnu: kquickcharts: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (kquickcharts): Update to 5.114.0.

Change-Id: Iae68c653b95d4a6ddf6b3027eb83bd87120ad41c
 2024-01-18 20:54:02 -05:00
Maxim Cournoyer
5c9183ba49
gnu: extra-cmake-modules: Update to 5.114.0. 
* gnu/packages/kde-frameworks.scm (extra-cmake-modules): Update to 5.114.0.

Change-Id: I93d40bc96a584d7680e42a14588032cdb2fcd301
 2024-01-18 20:54:02 -05:00
Clément Lassieur
17187aab61
gnu: torbrowser: Remove useless inputs. 
One should never change assets, so no point being an input.

* gnu/packages/tor.scm (torbrowser)[arguments]: In the ‘deploy-assets’ phase,
directly refer to ‘torbrowser-assets’.
[inputs]: Remove ‘torbrowser-assets’ and ‘bash-minimal’.

Change-Id: I096f430e8277021462afffa65983ed2a8af08ed2
 2024-01-19 00:48:09 +01:00
Ricardo Wurmus
7f7f2844ad
gnu: Add gfortran-9. 
* gnu/packages/gcc.scm (gfortran-9): New variable.

Change-Id: Icac0eeef445dcac72b8709ed81367a718116fd87
 2024-01-18 23:10:39 +01:00
Ricardo Wurmus
fdc6c6e29f
gnu: Add r-sictools. 
* gnu/packages/bioconductor.scm (r-sictools): New variable.

Change-Id: I6d6f821f054ff7fad190eb495eef7c73608d46d7
 2024-01-18 23:10:39 +01:00
Sharlatan Hellseher
36846d2801
gnu: pacemaker: Update to 2.1.7. 
* gnu/packages/high-availability.scm (pacemaker): Update to 2.1.7.

Change-Id: I5df38ef3c937e6ab3c902afae3525df61d358bb7
 2024-01-18 21:26:28 +00:00
Sharlatan Hellseher
1beb46f9b2
gnu: corosync: Update to 3.1.8. 
* gnu/packages/high-availability.scm (corosync): Update to 3.1.8.

Change-Id: Iaf623ccf3a75cd8aac007a5425d245f9c238789c
 2024-01-18 21:26:28 +00:00
Sharlatan Hellseher
4b1c271e24
gnu: nsq: Update to 1.3.0. 
* gnu/packages/high-availability.scm (nsq): Update to 1.3.0.

Change-Id: If092367dbb7413ba177edeac494924b2e170120f
 2024-01-18 21:26:28 +00:00
Sharlatan Hellseher
da50572695
gnu: kronosnet: Update to 1.28. 
* gnu/packages/high-availability.scm (kronosnet): Update to 1.28.

Change-Id: Id2974609b7cc8429b6ee8faf8752eed0ddfa1f00
 2024-01-18 21:26:28 +00:00
Sharlatan Hellseher
cdb8338f4e
gnu: libqb: Update to 2.0.8. 
* gnu/packages/high-availability.scm (libqb): Update to 2.0.8.

Change-Id: I602a3c3d3b792bc316e699632af6b5dda75fd394
 2024-01-18 21:26:27 +00:00
Sharlatan Hellseher
078215449c
gnu: haproxy: Update to 2.9.0. 
* gnu/packages/high-availability.scm (haproxy): Update to 2.9.0.

Change-Id: I430c0694ba682b3be5332fdafb20ba7ac5996402
 2024-01-18 21:26:09 +00:00
Troy Figiel
0118fe6f85
gnu: python-plotnine: Reformat with guix style. 
* gnu/packages/python-science.scm (python-plotnine): Reformat with guix style.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-18 21:04:21 +00:00
Troy Figiel
662ae5eac2
gnu: python-plotnine: Fix build. 
* gnu/packages/python-science.scm (python-plotnine): Fix build.
[arguments]<#:test-flags>: Add test_custom_shape to ignored tests.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-18 20:56:59 +00:00
Herman Rimm
3e3975275b
gnu: u-boot: Update to 2024.01. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2024.01.
[source]: Remove patman patch, add build-without-libcrypto patch.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Remove
upstreamed diffs.
* gnu/packages/patches/u-boot-build-without-libcrypto.patch: Add file.
* gnu/packages/patches/u-boot-patman-change-id.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Add patch, remove patch.

Change-Id: I5a21d4cd645449ff669f17cdabe5313870bec46f
Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
 2024-01-18 10:18:00 -08:00
Dariqq
a7a0b5dc59
gnu: linux-libre 4.14: Update to 4.14.336. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.336.
(linux-libre-4.14-pristine-source): Update hash.

Change-Id: I6d3a8958d745bc729194e4ff64774d9a7df5aa50
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:36 -05:00
Wilko Meyer
c8d15a5670
gnu: linux-libre 4.19: Update to 4.19.305. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.305.
(linux-libre-4.19-pristine-source): Update hashes.

Change-Id: I6b99e5b626077cbd6fd36f45cacfb12ce8e3decc
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:35 -05:00
Wilko Meyer
33cdd7d362
gnu: linux-libre 5.4: Update to 5.4.267. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.267.
(linux-libre-5.4-pristine-source): Update hashes.

Change-Id: Ic185da10b89a3b677be471545c4cd4fb506e66c4
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:35 -05:00
Wilko Meyer
afd2c566d8
gnu: linux-libre 5.10: Update to 5.10.208. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.208.
(linux-libre-5.10-pristine-source): Update hashes.

Change-Id: I0b627be7dc308e7217c541451642266395ee4f95
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:35 -05:00
Wilko Meyer
fe3e9a02be
gnu: linux-libre 5.15: Update to 5.15.147. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.147.
(linux-libre-5.15-pristine-source): Update hashes.

Change-Id: I88c1a8ac970334bf29bceeef20aab193ab3ef4f6
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:35 -05:00
Wilko Meyer
1a2a4d242e
gnu: linux-libre 6.1: Update to 6.1.73. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.73.
(linux-libre-6.1-pristine-source): Update hashes.

Change-Id: I9f0ec4b0ec25b41acc40c8b7c529bf9bcd838a06
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:34 -05:00
Wilko Meyer
95fc3f4488
gnu: linux-libre 6.6: Update to 6.6.12. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.12.
(linux-libre-6.6-pristine-source): Update hashes.

Change-Id: I47248352ba921ec9eba237d92b7f0e33ffb994d9
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:23 -05:00
Ricardo Wurmus
f1aaaf2ac1
gnu: r-tximeta: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.2.

Change-Id: I166ca1f24ecef8067f36a35a140dff345fdab7a0
 2024-01-18 16:01:55 +01:00
Ricardo Wurmus
b19e208c17
gnu: r-basilisk: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.2.

Change-Id: I9524ac5f52107c38b3c1172f3083836c7eabac99
 2024-01-18 16:01:55 +01:00
Ricardo Wurmus
cde5a13151
gnu: r-scran: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.1.

Change-Id: I4a2784c87fdaa09a370c4d46101dbb569bcc39ab
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
eee867139c
gnu: r-xcms: Update to 4.0.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.2.

Change-Id: I1fe358bb287acb2810b83c383b0cd1b28e8c97b5
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
a162ff0fa4
gnu: r-genomicalignments: Update to 1.38.2. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.2.

Change-Id: Ia521daa60db1fab67d77be2fddf356e6e4950efd
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
5ad5cb8c6e
gnu: r-edger: Update to 4.0.9. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.9.

Change-Id: I253e9e2a5675b13e7947601a8726bea8aad63792
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
c64c5a33b2
gnu: r-dss: Update to 2.50.1. 
* gnu/packages/bioconductor.scm (r-dss): Update to 2.50.1.

Change-Id: Ief667e0b83ae2220900d021ebe93d27c4747c91d
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
e3efa67a2e
gnu: r-densvis: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.1.

Change-Id: I52383b9b530fdf0fe262752d639c9f2834e70fd0
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
85cc64bfb8
gnu: r-animalcules: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.2.
[propagated-inputs]: Remove r-biomformat, r-glmnet, and r-plotroc; add r-rocit.

Change-Id: Idd769a9608154b66871a38701a49e84f008f849c
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus
f6f48b13e5
gnu: Add r-rocit. 
* gnu/packages/cran.scm (r-rocit): New variable.

Change-Id: I255db21624dd3684d38748ce42ce71e8fa9fb73b
 2024-01-18 16:01:54 +01:00
宋文武
48b5e88518
gnu: libime: Update to 1.1.5. 
* gnu/packages/fcitx5.scm (libime): Update to 1.1.5.

Change-Id: I5dc2b083df7b3b3f4ed93bcbf2e86190d647a497
 2024-01-18 19:26:45 +08:00
宋文武
21eeda2f57
gnu: fcitx5: Update to 5.1.7. 
* gnu/packages/fcitx5.scm (fcitx5): Update to 5.1.7.

Change-Id: Ifd87b6bb21afd2980d95a09177f28048d9a7e182
 2024-01-18 19:26:45 +08:00
宋文武
6a048713ec
gnu: fcitx5-rime: Update to 5.1.4. 
* gnu/packages/fcitx5.scm (fcitx5-rime): Update to 5.1.4.

Change-Id: If418aff57363ffc2f2469eedbf90606d7ff3aac8
 2024-01-18 18:14:57 +08:00
宋文武
cdc320ef53
gnu: fcitx5-configtool: Update to 5.1.3. 
* gnu/packages/fcitx5.scm (fcitx5-configtool): Update to 5.1.3.

Change-Id: I9b75478fb4b3fe1d690de9f33a0dce02781a05a3
 2024-01-18 18:14:57 +08:00
宋文武
314bc2d046
gnu: fcitx5-chinese-addons: Update to 5.1.3. 
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons): Update to 5.1.3.

Change-Id: I90c8231e967add94c59c4c912025100b9f4bca57
 2024-01-18 18:14:57 +08:00
宋文武
35382441e4
gnu: fcitx5-anthy: Update to 5.1.3. 
* gnu/packages/fcitx5.scm (fcitx5-anthy): Update to 5.1.3.

Change-Id: Ifb45a5e36aeb03f54df449c60ab58ee8f393d534
 2024-01-18 18:14:57 +08:00
宋文武
6c1804b6da
gnu: fcitx5-qt: Update to 5.1.4. 
* gnu/packages/fcitx5.scm (fcitx5-qt): Update to 5.1.4.

Change-Id: Ie2b8a3bb061d4a068602a841dae4b50a37715668
 2024-01-18 18:14:57 +08:00
宋文武
c9d2cf0fa5
gnu: fcitx5-gtk: Update to 5.1.1. 
* gnu/packages/fcitx5.scm (fcitx5-gtk): Update to 5.1.1.

Change-Id: If4d6fcddc1a284aa02519b93fdd89664ec1915d5
 2024-01-18 18:14:57 +08:00
宋文武
3cb77a3ed1
gnu: libime: Update to 1.1.4. 
* gnu/packages/fcitx5.scm (libime): Update to 1.1.4.

Change-Id: Ibf60683739337e886316ea88d97e899053469ed7
 2024-01-18 18:14:57 +08:00
宋文武
b38955ec6e
gnu: fcitx5-lua: Update to 5.0.12. 
* gnu/packages/fcitx5.scm (fcitx5-lua): Update to 5.0.12.

Change-Id: Ie4b4c3496a59a0a956359a73a780de8a6c2211f7
 2024-01-18 18:14:57 +08:00
宋文武
fbcdbb82a8
gnu: fcitx5: Update to 5.1.6. 
* gnu/packages/fcitx5.scm (fcitx5): Update to 5.1.6.
[inputs]: Add libuv.

Change-Id: I77e722c8ae76272ce76bbb42e5a3a01d81dff433
 2024-01-18 18:14:57 +08:00
宋文武
c9ed353be1
gnu: xcb-imdkit: Update to 1.0.6. 
* gnu/packages/fcitx5.scm (xcb-imdkit): Update to 1.0.6.

Change-Id: If5398cee97d20fed4e1f643fabc8950f007d6786
 2024-01-18 18:14:57 +08:00
Nicolas Graves via Guix-patches via
c49957de72
gnu: emacs-org-agenda-files-track: Update to 0.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-agenda-files-track): Update to 0.4.0.

Change-Id: I69e0efd85d03dc5202d18a47d4e05b82e01b0994
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-18 10:52:42 +03:00
Nicolas Graves via Guix-patches via
2ebb7f57c2
gnu: emacs-org-dynamic-agenda-ql: Rename package to emacs-org-agenda-files-track-ql. 
* gnu/packages/emacs-xyz.scm (emacs-org-dynamic-agenda-ql): Define in terms of
'deprecated-package'.
(emacs-org-agenda-files-track-ql): New variable, formerly known as
"emacs-org-dynamic-agenda-ql".

Change-Id: Ib73181ecf6538de77c78f2d3b20f02e0df85beac
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-18 10:52:42 +03:00
Nicolas Graves via Guix-patches via
aa592f7192
gnu: emacs-org-dynamic-agenda: Rename package to emacs-org-agenda-files-track. 
* gnu/packages/emacs-xyz.scm (emacs-org-dynamic-agenda): Define in terms of
'deprecated-package'.
(emacs-org-agenda-files-track): New variable, formerly known as
"emacs-org-dynamic-agenda".

Change-Id: If0e8e3fe5871b585880944fd73a5ae37c6fd3464
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-18 10:52:41 +03:00
Ricardo Wurmus
6394736d79
Revert "gnu: r-randomforestsrc: Update to 3.2.3." 
This reverts commit 891c0845e2.

It was pushed by accident.  Any version of r-randomforestsrc later than 2.9.3
needs r-diagrammer, which contains too many minified JavaScript files.
 2024-01-18 08:12:47 +01:00
Ricardo Wurmus
4532eb6389
gnu: r-fastcluster: Update to 1.2.6. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.2.6.

Change-Id: I438a15e96022737c5f002d8a3b1accdf17458ce5
 2024-01-17 23:09:52 +01:00
Ricardo Wurmus
fd32212bf0
gnu: r-withr: Update to 3.0.0. 
* gnu/packages/statistics.scm (r-withr): Update to 3.0.0.

Change-Id: Ib20faa2879849b566c17934ec1bea85ca7b41ca5
 2024-01-17 23:09:52 +01:00
Ricardo Wurmus
3a9ef6b8c2
gnu: r-roxygen2: Update to 7.3.0. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.0.

Change-Id: I28783dafddbf63c61fe8885b0a14030b697bc6a2
 2024-01-17 23:09:52 +01:00
Ricardo Wurmus
b8d9b01625
gnu: r-dbi: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.2.1.

Change-Id: If362fb70ce921631f2cd8ac695662d7ea2c8b195
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus
c6c76247f9
gnu: r-digest: Update to 0.6.34. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.34.

Change-Id: Ib01bc0c2081a916cf1a9d099d9e3782a816670f1
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus
aa71ac746f
gnu: r-matrix: Update to 1.6-5. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-5.

Change-Id: I8b2ee394d194307fc107c9bfada81320f10df22f
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus
bfcf9be720
gnu: r-mass: Update to 7.3-60.0.1. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-60.0.1.

Change-Id: I4addec35e70445932413ce1a3f033a278ef7eda4
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus
91e4f49fa8
gnu: r-paws: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws): Update to 0.5.0.

Change-Id: I9692850a4464872f61d1eb884f5b1f0bcb5e0876
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus
5dcfb69df2
gnu: r-paws-cost-management: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-cost-management): Update to 0.5.0.

Change-Id: I4e306920691e197a887767c2267556dcfd2e7f81
 2024-01-17 23:09:50 +01:00
Ricardo Wurmus
891c0845e2
gnu: r-randomforestsrc: Update to 3.2.3. 
* gnu/packages/cran.scm (r-randomforestsrc): Update to 3.2.3.

Change-Id: I18ece3d34400315157d86841be39612cabb797f2
 2024-01-17 23:09:50 +01:00
Ricardo Wurmus
d7a5da6d02
gnu: r-spatstat-data: Update to 3.0-4. 
* gnu/packages/cran.scm (r-spatstat-data): Update to 3.0-4.

Change-Id: Ia119a9f9cc98b67dc1192377f3d8c994a98718f1
 2024-01-17 23:09:50 +01:00
Ricardo Wurmus
7f7284d8cd
gnu: r-rintrojs: Update to 0.3.4. 
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.4.

Change-Id: I1332c6c5fe0817f796ed206ed85e3544b26c7b7e
 2024-01-17 23:09:50 +01:00
Ricardo Wurmus
92e835b1fe
gnu: r-rglpk: Update to 0.6-5.1. 
* gnu/packages/cran.scm (r-rglpk): Update to 0.6-5.1.

Change-Id: Idb952e1bbd5e57c779681661fa7a1c0c38a86bb2
 2024-01-17 23:09:49 +01:00
Ricardo Wurmus
ee0955419c
gnu: r-dae: Update to 3.2.21. 
* gnu/packages/cran.scm (r-dae): Update to 3.2.21.

Change-Id: Ib0dc220b4e3fb7adf707eb2d1fd940f105f69a3d
 2024-01-17 23:09:49 +01:00
Ricardo Wurmus
137277782f
gnu: r-optparse: Update to 1.7.4. 
* gnu/packages/cran.scm (r-optparse): Update to 1.7.4.

Change-Id: I8e40f6f8e92f436ee843a68ac3860c18a47f4478
 2024-01-17 23:09:49 +01:00
Ricardo Wurmus
4fcbec929e
gnu: r-pbdzmq: Update to 0.3-11. 
* gnu/packages/cran.scm (r-pbdzmq): Update to 0.3-11.

Change-Id: I38713135212d54c6bad6f7093ac48c073c2a3368
 2024-01-17 23:09:49 +01:00
Ricardo Wurmus
b7e163befb
gnu: r-gmp: Update to 0.7-4. 
* gnu/packages/cran.scm (r-gmp): Update to 0.7-4.

Change-Id: I8f31a58c57203f5c477093248e540d21075356da
 2024-01-17 23:09:48 +01:00
Ricardo Wurmus
7bf376a675
gnu: r-ks: Update to 1.14.2. 
* gnu/packages/cran.scm (r-ks): Update to 1.14.2.
[propagated-inputs]: Remove r-plot3d.

Change-Id: I8c7abbbd691ca0de5da704cbfa170aeb2949d8e1
 2024-01-17 23:09:48 +01:00
Ricardo Wurmus
5d182499e8
gnu: r-hdf5r: Update to 1.3.9. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.9.

Change-Id: Ib6172699049cf065a2c116fbeb23ef91f7455e64
 2024-01-17 23:09:48 +01:00
Ricardo Wurmus
4eb349dba6
gnu: r-fnn: Update to 1.1.4. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.4.

Change-Id: I90e2d6f47004f92e8f9d05ffb7e56b7012be6215
 2024-01-17 23:09:48 +01:00
Ricardo Wurmus
10c66d537d
gnu: r-expm: Update to 0.999-9. 
* gnu/packages/cran.scm (r-expm): Update to 0.999-9.

Change-Id: Ia036cd592e465af3101385d1aff5e0e850f5a8a9
 2024-01-17 23:09:47 +01:00
Ricardo Wurmus
20a87c1ed2
gnu: r-uuid: Update to 1.2-0. 
* gnu/packages/cran.scm (r-uuid): Update to 1.2-0.

Change-Id: I3d2356a962353c052871f3876ff3b0b7176c6c30
 2024-01-17 23:09:47 +01:00
Ricardo Wurmus
b50cd1276c
gnu: r-timeseries: Update to 4032.109. 
* gnu/packages/cran.scm (r-timeseries): Update to 4032.109.

Change-Id: I7f70021db91fcc4e23cca07d69e2ea7598a0178b
 2024-01-17 23:09:47 +01:00
Ricardo Wurmus
efabd0054c
gnu: r-statsexpressions: Update to 1.5.3. 
* gnu/packages/cran.scm (r-statsexpressions): Update to 1.5.3.

Change-Id: Ia8fec353102e48f894d57f02ba9dd26196b65b59
 2024-01-17 23:09:47 +01:00
Ricardo Wurmus
9b4a00f6c2
gnu: r-ddalpha: Update to 1.3.15. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.15.

Change-Id: Ie1d591758470e1dc89c05bf829774a3db4bb8245
 2024-01-17 23:09:46 +01:00
Ricardo Wurmus
94d70b4f77
gnu: r-ff: Update to 4.0.12. 
* gnu/packages/cran.scm (r-ff): Update to 4.0.12.

Change-Id: I8f6c1b2de8eaff593d3521886259015de029ceff
 2024-01-17 23:09:46 +01:00
Ricardo Wurmus
9eacd1a7e3
gnu: r-rcppspdlog: Update to 0.0.16. 
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.16.

Change-Id: Ie64910ef2c989830b48c84b69b9ceceffccf775a
 2024-01-17 23:09:46 +01:00
Ricardo Wurmus
3ad93a9458
gnu: r-pkgload: Update to 1.3.4. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.4.

Change-Id: I5aa683b1ce91c3fd6ee9ed5015f9a0dabda88b9e
 2024-01-17 23:09:46 +01:00
Ricardo Wurmus
d38f1e5013
gnu: r-ggvenndiagram: Update to 1.5.0. 
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.5.0.
[propagated-inputs]: Remove r-tidyr; add r-venn and r-yulab-utils.

Change-Id: Ic065aaf5f8e62f8c1f23e6c845dde88bbc682f69
 2024-01-17 23:09:45 +01:00
Ricardo Wurmus
612a24a7b8
gnu: r-proj4: Update to 1.0-14. 
* gnu/packages/cran.scm (r-proj4): Update to 1.0-14.

Change-Id: I97575fc9f094b0e3cedb33dc83bbea286ed6c63d
 2024-01-17 23:09:45 +01:00
Ricardo Wurmus
7f7ca62e27
gnu: r-ggstatsplot: Update to 0.12.2. 
* gnu/packages/cran.scm (r-ggstatsplot): Update to 0.12.2.

Change-Id: Iafe26006e36b482da64afa5c1ae88176ba2590d0
 2024-01-17 23:09:45 +01:00
Ricardo Wurmus
e1d3131080
gnu: r-cplm: Update to 0.7-12. 
* gnu/packages/cran.scm (r-cplm): Update to 0.7-12.

Change-Id: I59dee59bdf25589ffe866f69996facfe39234b39
 2024-01-17 23:09:44 +01:00
Ricardo Wurmus
9605247199
gnu: r-collapse: Update to 2.0.9. 
* gnu/packages/cran.scm (r-collapse): Update to 2.0.9.

Change-Id: I748bd138cb79ea3af4d90788544e8f1cecb91440
 2024-01-17 23:09:44 +01:00
Ricardo Wurmus
dd4f952366
gnu: Add r-venn. 
* gnu/packages/cran.scm (r-venn): New variable.

Change-Id: I6ec3e890cab6e9042686148b7c52988f0dbb878e
 2024-01-17 23:06:31 +01:00
Ricardo Wurmus
270570f090
gnu: python-snaptools: Disable tests. 
* gnu/packages/bioinformatics.scm (python-snaptools)[arguments]: Disable
tests.

Change-Id: I4934bda3cfbaf42a87f57035ec12d084112dcc24
 2024-01-17 21:41:45 +01:00
Wilko Meyer
95a3aaf7ad
gnu: Add linux-libre 6.7. 
* gnu/packages/linux.scm (linux-libre-6.7-version, linux-libre-6.7-gnu-revision,
deblob-scripts-6.7, linux-libre-6.7-pristine-source, linux-libre-6.7-source,
linux-libre-headers-6.7, linux-libre-6.7): New variables.
* gnu/packages/aux-files/linux-libre/6.7-arm.conf,
gnu/packages/aux-files/linux-libre/6.7-arm64.conf,
gnu/packages/aux-files/linux-libre/6.7-i686.conf,
gnu/packages/aux-files/linux-libre/6.7-x86.conf: New files.
* Makefile.am (AUX_FILES): Add them.
* Makefile.am: Update my copyright header.

Change-Id: I88b633933875f64bd2859774419e077d8f36d75b
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-17 15:23:35 -05:00
cage
8ca490e660
gnu: gmid: Update to 2.0. 
* gnu/packages/web.scm (gmid): Update it.

Change-Id: I8f1bcd36130a63d07e934093b5b12cc01a6d5022
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-17 18:30:28 +01:00
kiasoc5
14e93b5f5a
gnu: perl-image-exiftool: Update to 12.70. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 12.70.

Change-Id: If8e26b7e92cb530391cdd1dd12e78b371494a6b3
 2024-01-17 18:30:27 +01:00
Artyom V. Poptsov
903386f872
gnu: Add go-github-com-charmbracelet-harmonica. 
* gnu/packages/golang.scm (go-github-com-charmbracelet-harmonica): New
  variable.

Change-Id: I7e08006571be4e6b21eb4df3df8f3c92a412c0ca
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-17 18:30:27 +01:00
Tomas Volf
aa74e0bf17
gnu: ngtcp2: Build libngtcp2_crypto_gnutls. 
* gnu/packages/networking.scm (ngtcp2)[arguments]<#:configure-flags>: Add
--with-gnutls.
[native-inputs]: Add pkg-config.
[inputs]: Add gnutls.

Change-Id: Id3a9210992d203a57a9b791f3c3752f2ebd3e634
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-17 18:30:27 +01:00
Tomas Volf
a17a900589
gnu: ngtcp2: Update to 1.1.0. 
* gnu/packages/networking.scm (ngtcp2): Update to 1.1.0.

Change-Id: I7f6b08952ba508207c8dedbd68c7c48dd17dd0ff
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-17 18:30:27 +01:00
Tomas Volf
685399c27d
gnu: Add nghttp3. 
* gnu/packages/web.scm (nghttp3): New variable.

Change-Id: I4ed318506f6d3bdd0c47a367b1dcc1b4454c09b2
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-17 18:30:27 +01:00
Tomas Volf
dcc6f0537f
gnu: web: Delete trailing whitespace. 
* gnu/packages/web.scm (krona-tools): Delete trailing whitespace.

Change-Id: Ide601b011d3e2c3c736bf041571f9ab00b5b5b1d
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-17 18:30:27 +01:00
nafkhamdc
7bbb329060
gnu: Add r-caic4. 
* gnu/packages/cran.scm (r-caic4): New variable.

Change-Id: Ifdfb6e69c7d1801b347ce16b4ee48a4950963fe4
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2024-01-17 17:23:24 +01:00
Ian Eure
b3e0a973bc
gnu: powertop: Correct package description. 
* gnu/packages/linux.scm (powertop): Correct package description.

Change-Id: Ifc81ed62158df8b3c235d335731590e977dcc725
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-17 11:18:00 +01:00
spacecadet
8fbda358ab
gnu: Add tgif. 
* gnu/packages/image.scm (tgif): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Change-Id: I4fd6bf5ae25806775e75dcca680a067f5d80ef5e
 2024-01-17 11:18:00 +01:00
Troy Figiel
dac977ea4e
gnu: Add python-pandera. 
* gnu/packages/python-science.scm (python-pandera): New variable.
 2024-01-17 11:18:00 +01:00
Troy Figiel
23cb6187f6
gnu: Add python-pandas-stubs. 
* gnu/packages/python-science.scm (python-pandas-stubs): New variable.
 2024-01-17 11:18:00 +01:00
Troy Figiel
6c34d33cde
gnu: Add python-typeguard-4. 
* gnu/packages/python-xyz.scm (python-typeguard-4): New variable.

Change-Id: Ic5728766e8171dc31a82056f55a8c00680db5870
 2024-01-17 11:17:59 +01:00
Troy Figiel
1e0b80b9e1
gnu: Add python-concurrent-log-handler. 
* gnu/packages/python-xyz.scm (python-concurrent-log-handler): New variable.
 2024-01-17 11:17:59 +01:00
Troy Figiel
4acaa72e7b
gnu: Add python-pdf2image. 
* gnu/packages/python-xyz.scm (python-pdf2image): New variable.
 2024-01-17 11:17:59 +01:00
Sharlatan Hellseher
d99670e33e
gnu: abjad-ext-ipython: Fix build. 
* gnu/packages/music.scm (abjad-ext-ipython): Fix build.
[propagated-inputs]: Add python-sphinx-autodoc-typehints.

Change-Id: Id20c0527e61b8be194c5387c6c43fdf82ab5ff09
 2024-01-16 21:43:30 +00:00
Sharlatan Hellseher
d79fd9adc3
gnu: python-deepdish: Fix build. 
* gnu/packages/python-science.scm (python-deepdish): Fix build.
[build-system]: Swap to pyproject-build-system.
[arguments]<#:test-flags>: Silent failing tests.

Change-Id: I4c4df66fc80434aaf5b95a7a62b83e0c1c02a4c6
 2024-01-16 21:43:30 +00:00
Ricardo Wurmus
9a9f05f1f2
gnu: Add samtools-1.14. 
* gnu/packages/bioinformatics.scm (samtools-1.14): New variable.

Change-Id: I0bd35b3865d7a417f55f1f768f7eb0c78a795e0f
 2024-01-16 19:35:37 +01:00
Ricardo Wurmus
e0369ba57d
gnu: samtools: Update to 1.19. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.19.
[source]: Simplify snippet.

Change-Id: If0e02bbbc8e0443eb418c078dc47525f432d7ebe
 2024-01-16 19:31:35 +01:00
Ricardo Wurmus
eda31ffaab
gnu: htslib: Update to 1.19. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.19.

Change-Id: I4d66d8ce37bfd335411a2acc6060f9a8c20c9e4a
 2024-01-16 19:22:03 +01:00
Ricardo Wurmus
cb1f38cc78
gnu: htscodecs: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (htscodecs): Update to 1.6.0.

Change-Id: Ibd5be30e8fbe7fe5d0ef494c1b1e0cd9ec3333cc
 2024-01-16 19:17:39 +01:00
Ricardo Wurmus
20606ca9af
gnu: Add python-prisma. 
* gnu/packages/databases.scm (python-prisma): New variable.

Change-Id: I7df9b5600fb49ef46a73678323bc29993f35fae2
 2024-01-16 15:40:35 +01:00
Ricardo Wurmus
224f8d543b
gnu: Add python-strenum. 
* gnu/packages/python-xyz.scm (python-strenum): New variable.

Change-Id: I6b6d64024db9358ea0a65cfd6c7cd6f94747de42
 2024-01-16 15:33:57 +01:00
Ricardo Wurmus
f4d2371808
gnu: python-readpaf: Explicitly disable tests. 
* gnu/packages/bioinformatics.scm (python-readpaf)[arguments]: Disable tests.

Change-Id: I28ddfa46675b74bd5073c12e5d33bcbf9dee8252
 2024-01-16 14:52:21 +01:00
Ricardo Wurmus
b8085c9240
gnu: python-pyls-black: Fix build. 
* gnu/packages/patches/python-pyls-black-41.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-pyls-black)[source]: Add patch.
[build-system]: Use pyproject-build-system.
[arguments]: Disable one failing test.

Change-Id: I14b2982644e58c0b43d76838febc6dfceb220b15
 2024-01-16 14:52:21 +01:00
Efraim Flashner
eb194090e2
gnu: debian-ports-archive-keyring: Update to 2024.01.05. 
* gnu/packages/debian.scm (debian-ports-archive-keyring): Update to 2024.01.05.

Change-Id: Ibaa279a91d9e39804eb5cc1bf759ca3afd69e962
 2024-01-16 14:24:10 +02:00
Efraim Flashner
feb96b1d15
gnu: debootstrap: Update to 1.0.134. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.134.
[arguments]: Remove obsolete substitution in 'patch-source phase.

Change-Id: I2a50ae75a43c0970e3ef866e02c49d87094e14eb
 2024-01-16 14:24:07 +02:00
Ricardo Wurmus
15d3de9d36
gnu: gourmet: Add missing input. 
* gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-toml.

Change-Id: I53bc9b0247c6dc32c5ec6e3cc518dbc982362bd2
 2024-01-16 12:44:38 +01:00
Ricardo Wurmus
73221c441f
gnu: python-pyrdfa3: Update to 3.6.2. 
* gnu/packages/rdf.scm (python-pyrdfa3): Update to 3.6.2.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom build phases.
[propagated-inputs]: Add python-requests.

Change-Id: Ie8a1a369a569d29c8f43248d03f024e6cc19c004
 2024-01-16 12:44:38 +01:00
Ricardo Wurmus
7d10e49dfc
gnu: python-clingraph: Update to 1.1.2. 
* gnu/packages/potassco.scm (python-clingraph): Update to 1.1.2.

Change-Id: I5910853d39389ff9ad981543204fd8ef1445e495
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
dc1719cba4
gnu: python-astroml: Make compatible with recent Matplot and Scipy. 
* gnu/packages/astronomy.scm (python-astroml)[arguments]: Add phases
'matplotlib-compatibility and 'scipy-compatibility.

Change-Id: Id88cf769f705f9326f41f951403583155bcee58f
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
579b35ddd1
gnu: python-bbknn: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.6.0.
[arguments]: Remove phase 'do-not-fail-to-find-sklearn.
[propagated-inputs]: Add python-pynndescent.
[native-inputs]: Add python-flit-core.

Change-Id: I5fca2d6ca52e54eb7650b3bb24a34a0aa47b1782
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
ae42b55d85
gnu: python-geopandas: Update to 0.14.2. 
* gnu/packages/geo.scm (python-geopandas): Update to 0.14.2.
[arguments]: Disable test_pandas_kind tests.

Change-Id: I2a49d6ef73a79b84751ce0225757a2b83019cd42
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
53c65baa3d
gnu: python-dask: Propagate click. 
* gnu/packages/python-xyz.scm (python-dask)[native-inputs]: Move python-click
from here...
[propagated-inputs]: ...to here.

Change-Id: I1a1617d9cb00268d9fc26f4fe6c9ecc6d0a2e375
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
e31e5928ae
gnu: python-xarray: Update to 2023.12.0. 
* gnu/packages/python-science.scm (python-xarray): Update to 2023.12.0.
[arguments]: Ignore one test file.
[propagated-inputs]: Add python-packaging.

Change-Id: I6b70f59670f7bc8b56787fe3436579db8ac113bb
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
076e891754
gnu: python-telomerecat: Disable tests. 
* gnu/packages/bioinformatics.scm (python-telomerecat)[arguments]: Disable tests.

Change-Id: I0422ae1e563374a8cc408fc9584cfb7b0e880e95
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
c3210ae8e2
gnu: python-mysql-connector-python: Defuse time bomb. 
Additional tests fail due to expired certificates.  Disable them.

* gnu/packages/python-xyz.scm (python-mysql-connector-python)[arguments]:
Disable six additional tests.

Change-Id: I99b5f15736af89c0281ab7aca56c1bd3958d1a46
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
8ef784e84c
gnu: python-adjusttext: Disable tests. 
* gnu/packages/python-xyz.scm (python-adjusttext)[arguments]: Disable tests.

Change-Id: Ib1002de20a6e301f43bb34f64f7299d4316d8a67
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
65d021a950
gnu: python-scikit-bio: Update to 0.5.9. 
* gnu/packages/bioinformatics.scm (python-scikit-bio): Update to 0.5.9.
[source]: Add patch.
[arguments]: Disable one test via #:test-flags; adjust 'compatibility phase;
update 'check phase.
[propagated-inputs]: Remove python-cachecontrol, python-lockfile, and
python-scikit-learn; add python-requests.
* gnu/packages/patches/python-scikit-bio-1887.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: Ie57b0256cf695e5ea088545cd2102335303a93e7
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
a8c1d812a0
gnu: python-pandas: Update to 1.5.3. 
* gnu/packages/python-science.scm (python-pandas): Update to 1.5.3.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; move test flags to #:test-flags; add phase
'patch-build-system; fix substitution of "which" executable; remove
'enable-parallel-build; remove custom 'check phase; add 'pre-check phase.
[propagated-inputs]: Add python-matplotlib.
[native-inputs]: Replace python-cython with python-cython-0.29.35.

Change-Id: I9d09971f707b925f469e29be67fe040c181314ff
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
fbe0233575
gnu: python-click-default-group: Update to 1.2.4. 
* gnu/packages/python-xyz.scm (python-click-default-group): Update to 1.2.4.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-flit-core and python-pytest.

Change-Id: I7e617ee57499542b7e832bb5ea24417b70e8cf85
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
016d136d89
gnu: datasette: Update to 1.0a7. 
* gnu/packages/databases.scm (datasette): Update to 1.0a7.
[propagated-inputs]: Add python-asyncinject and python-sqlite-utils.

Change-Id: If713cd0f115c8092f9cc200daa850f9a78a20f6b
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
e8f68ea334
gnu: Add python-asyncinject. 
* gnu/packages/python-xyz.scm (python-asyncinject): New variable.

Change-Id: I2647e8340bca2efabc222d19155d330b1a5ff16f
 2024-01-16 12:44:37 +01:00
Ricardo Wurmus
186aa138a6
gnu: python-metpy: Update to 1.6.0. 
* gnu/packages/geo.scm (python-metpy): Update to 1.6.0.
[arguments]: Add phases 'fix-version-check and 'hide-imp-deprecation-warnings.
[native-inputs]: Add python-packaging; remove python-shapely and
python-cartopy.

Change-Id: I4a46a5e60b1904699475608146f2a09aefc07624
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
0c6db478ec
gnu: python-pint: Add missing input. 
This is a follow-up to commit 23b8601cd2cf90ed11a51ca6db133083433e74d8.
Without this input the version string will be 0.0.0.

* gnu/packages/python-xyz.scm (python-pint)[native-inputs]: Add
python-setuptools-scm.

Change-Id: Id621e459f119d7268cdcc41ef93bcae135e842d1
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
cda0f029d6
gnu: python-hicexplorer: Make compatible with latest scipy. 
* gnu/packages/bioinformatics.scm (python-hicexplorer)[arguments]: Add
'scipy-compatibility phase.

Change-Id: I31e9058b7fd4ff9245837d5f1cd145b569ec35ad
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
3ce25c212f
gnu: python-hicmatrix: Update to 17.1. 
* gnu/packages/bioinformatics.scm (python-hicmatrix): Update to 17.1.
[arguments]: Remove.

Change-Id: I6b1230d703d0dc1a88ee61a84cc6cd95f7eeb6f9
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
998df6e047
gnu: python-scikit-optimize: Make compatible with latest sklearn. 
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Add
snippet to fix outdated use of "max_features" option.

Change-Id: I4272ffc82b4951315b74b4adee27527e8d513fca
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
50dbb9561f
gnu: python-fit-nbinom: Disable tests. 
* gnu/packages/python-xyz.scm (python-fit-nbinom)[arguments]: Disable tests.

Change-Id: I980480a3326dccc67930d34474832712005d1bb2
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
6b4c911a99
gnu: scvelo: Make compatible with latest matplotlib. 
* gnu/packages/bioinformatics.scm (scvelo)[arguments]: Add phase
'matplotlib-compatibility.

Change-Id: Ia761821c8aa1e516525cff7c680db471a5908e5f
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
e833d3abf8
gnu: python-cartopy: Update to 0.22.0. 
* gnu/packages/geo.scm (python-cartopy): Update to 0.22.0.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; use #:test-flags; update list of disabled
tests; add phase 'remove-endpoint.
[propagated-inputs]: Add python-packaging; remove python-pykdtree.
[native-inputs]: Add python-coveralls and python-pytest-xdist; remove
python-flufl-lock.

Change-Id: I353fff0ceade648286ef552effdc35671032c62c
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
3118d95b56
gnu: python-demuxem: Disable tests. 
* gnu/packages/bioinformatics.scm (python-demuxem)[arguments]: Disable tests,
because there aren't any.

Change-Id: I50364ca6744cf9d2704d4b75a8c79c4fdc4ada6e
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
745b208767
gnu: python-pint: Update to 0.23. 
* gnu/packages/python-xyz.scm (python-pint): Update to 0.23.
[arguments]: Disable "test_load_definitions_stage_2" test.
[native-inputs]: Remove python-dask, python-distributed,
python-importlib-metadata, python-setuptools-scm, python-sparse,
python-uncertainties, and python-xarray; add python-pytest-benchmark.
[propagated-inputs]: Add python-uncertainties.

Change-Id: I98baae3369e5ffeea96355d9509296771c33dc50
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
1c01f7e5c6
gnu: python-cooler: Update to 0.9.1. 
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.9.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom build phases; disable tests via #:test-flags.
[propagated-inputs]: Remove python-six and python-sparse.
[native-inputs]: Remove python-codecov, python-mock, and python-pytest-flake8;
add python-coverage, python-hatchling, and python-isort.

Change-Id: I48b6a9c07a2bc1c213971585d7191573fd5d5aca
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
3d3a55ec19
gnu: python-plastid: Update to 0.6.1. 
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.1.
[arguments]: Disable four tests.

Change-Id: If0225f226e702e89d451e2955d0f76691a8816c0
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
3a58a3ef05
gnu: cnvkit: Update to 0.9.10. 
* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.10.
[arguments]: Remove.
[inputs]: Add r-minimal.

Change-Id: Iaa27fd3dddc507c7a955441f066d4b0e3b8f1757
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
5a7f7156a2
gnu: python-reportlab: Update to 4.0.8. 
* gnu/packages/pdf.scm (python-reportlab): Update to 4.0.8.
[arguments]: Update configure flags and 'find-libraries phase.
[inputs]: Remove freetype and libart-lgpl.
[propagated-inputs]: Add python-chardet.

Change-Id: I626ef4c71a0b867ec4e1c74a71e45843349f46ef
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
b8e4be02eb
gnu: python-pegasusio: Disable tests. 
* gnu/packages/bioinformatics.scm (python-pegasusio)[arguments]: Disable
tests.

Change-Id: I6b32ed416b562b47088dbc34eb7bcb0b8e2cc414
 2024-01-16 12:44:36 +01:00
Ricardo Wurmus
c620c8ae81
gnu: python-pyani: Disable tests. 
There are none.

* gnu/packages/bioinformatics.scm (python-pyani)[arguments]: Disable tests.

Change-Id: I6862082c8335e5d487da6d1705ed094922f14e47
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
b460f89d93
gnu: tadbit: Add missing input. 
* gnu/packages/bioinformatics.scm (tadbit)[native-inputs]: Add glib.

Change-Id: Ia1f79e2a30f5b57616cf3d1f7b6438f07451fbbf
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
c085139bc9
gnu: python-captum: Update to 0.7.0. 
* gnu/packages/machine-learning.scm (python-captum): Update to 0.7.0.
[propagated-inputs]: Add python-tqdm.

Change-Id: I8917b6e294fe08077a3af4423deefa9769ba9384
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
efd98a9c45
gnu: python-poliastro: Make compatible with latest matplotlib. 
* gnu/packages/astronomy.scm (python-poliastro)[arguments]: Add phase
'matplotlib-compatibility; disable test_porkchop_plotting.

Change-Id: Ie70673c69d4bdfa424e324d2848e9567360b03ef
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
2c94760dcb
gnu: python-cleanlab: Disable test_aux_inputs, enable other tests. 
* gnu/packages/machine-learning.scm (python-cleanlab)[arguments]: Remove
'disable-bad-tests phase and ignore test files in #:test-flags instead;
disable test_aux_inputs test, but re-enable tests from
test_multilabel_classification.py.
[native-inputs]: Add python-pytest-lazy-fixture.

Change-Id: I77a16768ff61215e918c98bccd3efa216fb30d7f
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
447876fa0d
gnu: python-scanpy: Update to 1.9.6. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.9.6.
[arguments]: Update test flags.
[native-inputs]: Add python-hatchling, python-hatch-vcs, and
python-pytest-nunit.

Change-Id: I6d4dcd267a076c5697ed103650841f520dc9917f
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
6a2f1863e7
gnu: Add python-pytest-nunit. 
* gnu/packages/check.scm (python-pytest-nunit): New variable.

Change-Id: Ic67c973460f09b15bf683f70040a3f5e4381108d
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
c647bd42a3
gnu: python-seaborn: Update to 0.13.1. 
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.13.1.
[propagated-inputs]: Add python-ipykernel, python-mypy, python-nbconvert,
python-numpydoc, python-pyyaml, and python-statsmodels.
[native-inputs]: Add python-flake8, python-pre-commit, python-pytest-cov, and
python-pytest-xdist; remove python-pypa-build.

Change-Id: Id1ed6cfaf7e0950e99c06900fd68fb1ab884bee0
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
82b7c3077f
gnu: python-matplotlib: Update to 3.8.2. 
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.8.2.
[build-system]: Use pyproject-build-system.
[arguments]: Enable more tests; simplify custom 'check phase.
[propagated-inputs]: Remove gobject-introspection, python-cairocffi,
python-certifi, python-pygobject, python-pytz, python-six, and
python-wxpython; add python-contourpy and python-importlib-resources.
[native-inputs]: Add pybind11.

Change-Id: Ie34826882fdcc20fac3b09130bcd0f4ad4f76b07
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
c7646437a2
gnu: Add python-contourpy. 
* gnu/packages/python-xyz.scm (python-contourpy): New variable.

Change-Id: Icbbe4a358242095fae36639c5c039c029eea4ee3
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
037cb397c1
gnu: python-kiwisolver: Update to 1.4.5. 
* gnu/packages/maths.scm (python-kiwisolver): Update to 1.4.5.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-typing-extension.
[native-inputs]: Add python-cppy, python-pytest, and python-setuptools-scm.

Change-Id: Iea75440dc58fa342dcf4a2a381b6dcc17e71e618
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
9ea9346168
gnu: Add python-cppy. 
* gnu/packages/python-xyz.scm (python-cppy): New variable.

Change-Id: I584fcddc3430960098d65f1916278a7473249a87
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
fa5d8c839a
gnu: python-umap-learn: Update to 0.5.5. 
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.5.
[build-system]: Use pyproject-build-system.
[arguments]: Remove 'numpy-compatibility and custom 'check phases.

Change-Id: I2123f66519730d43e454d9536e8cb7b6c4569d56
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
ca1749c243
gnu: python-pynndescent: Update to 0.5.11. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.11.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[propagated-inputs]: Add python-importlib-metadata.

Change-Id: I14f15ea98157ed15b360971c30fe00c5f00af4a7
 2024-01-16 12:44:34 +01:00