* guix/import/cran.scm (phases-for-inputs): Add 'set-HOME phase when
ExperimentHub is among inputs.
Change-Id: Ie3a2443934704eed8694a76a651b806209722421
* guix/import/cran.scm (latest-bioconductor-release): Determine package type
and pass it to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(%bioconductor-updater): Compose all bioconductor predicates.
Change-Id: Icef3ae05e28ed0f2796d9abf90e51821d2dfcc4c
* guix/import/cran.scm (phases-for-inputs, maybe-arguments): New procedures.
(description->package): Splice in result of MAYBE-ARGUMENTS.
Change-Id: I578e1903f37c91bf865f0be49b04187ec372ed05
These were encountered in a mass import of Bioconductor packages.
* guix/import/cran.scm (invalid-packages): Add "rtools".
(transform-sysname): Add aliases for Python and bioinformatics packages.
Change-Id: I97e13cee10c2ee85d4b9296d91afccbdbcec4946
* guix/import/crate.scm (min-element, max-crate-version-of-semver,
nonyanked-crate-versions): New procedures.
(import-release)[version]: Update to the requested version or the newest
semver-compatible version.
Co-authored by David Elsing <david.elsing@posteo.net>
Change-Id: I72b081147c4eb9faf482f159b7145aaaf9f91f29
The default value of #f led to ("..." . #f) being passed further down as an
entry point. That is not an issue for command line invocation, since in that
code path '() was already used as a default value, but it broke docker system
test with the following error:
building /gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv...
tar: Removing leading `/' from member names
Backtrace:
6 (primitive-load "/gnu/store/g8hqzccfvn4mkm41jqs65c27gs7?")
In ./guix/docker.scm:
268:6 5 (build-docker-image "/gnu/store/zi2f5dfdrhviinm6jxp3cj?" ?)
In ice-9/ports.scm:
433:17 4 (call-with-output-file _ _ #:binary _ #:encoding _)
476:4 3 (_ _)
In ./guix/docker.scm:
270:21 2 (_)
123:40 1 (config "1996ead589ab366473d935c4d5bd0c38b998f3b299847?" ?)
In unknown file:
0 (list->vector ("/gnu/store/1pvqd30qi1aigjdf7s7l8v7?" . #))
ERROR: In procedure list->vector:
In procedure vector: Wrong type argument in position 1: ("/gnu/store/1pvqd30qi1aigjdf7s7l8v7wpvrrhfkj-profile/bin/guile" . #f)
note: keeping build directory `/tmp/guix-build-docker-pack.tar.gz.drv-16'
builder for `/gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv' failed with exit code 1
build of /gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv failed
View build log at '/var/log/guix/drvs/dl/l8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv.gz'.
cannot build derivation `/gnu/store/dq9qk1ba0f07572m8ck3xws28x1b3rif-docker-test.drv': 1 dependencies couldn't be built
guix build: error: build of `/gnu/store/dq9qk1ba0f07572m8ck3xws28x1b3rif-docker-test.drv' failed
make: *** [Makefile:7044: check-system] Error 1
Breakage was introduced in 7d5168a2af.
* guix/scripts/pack.scm (docker-image)[entry-point-argument]: Default to '().
Change-Id: If5fc1f8bcb0981df11409636e71f2ca91b05612f
* doc/guix.texi (Invoking guix import): Mention '--allow-yanked'.
* guix/import/crate.scm (make-crate-sexp): Add yanked? argument. For
yanked packages, use the full version suffixed by "-yanked" for
generated variable names and add a comment and package property.
(crate->guix-package): Add allow-yanked? argument and if it is set to #t,
allow importing yanked crates if no other version matching the
requirements exists.
[find-package-version]: Packages previously marked as yanked are only
included if allow-yanked? is #t and then take the lowest priority.
[find-crate-version]: If allow-yanked? is #t, also consider yanked
versions with the lowest priority.
[dependency-name+version]: Rename to ...
[dependency-name+version+yanked] ...this. Honor allow-yanked? and choose
between an existing package and an upstream package. Exit with an error
message if no version fulfilling the requirement is found.
[version*]: Exit with an error message if the crate version is not found.
(cargo-recursive-import): Add allow-yanked? argument.
* guix/read-print.scm: Export <comment>.
* guix/scripts/import/crate.scm: Add "--allow-yanked".
* tests/crate.scm: Add test 'crate-recursive-import-only-yanked-available'.
[sort-map-dependencies]: Adjust accordingly.
[remove-yanked-info]: New variable.
Adjust test 'crate-recursive-import-honors-existing-packages'.
(test-bar-dependencies): Add yanked dev-dependencies.
(test-leaf-bob-crate): Add yanked versions.
(rust-leaf-bob-3.0.2-yanked): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: I175d89b39774e6b57dcd1f05bf68718d23866bb7
If --recursive-dev-dependencies is specified, development dependencies
are also included for all recursively imported packages.
* doc/guix.texi (Invoking guix import): Mention --recursive-dev-dependencies.
* guix/import/crate.scm (crate-recursive-import): Add
recursive-dev-dependencies? argument.
* guix/scripts/import/crate.scm (show-help, guix-import-crate): Add
"--recursive-dev-dependencies".
* tests/crate.scm: Test both #f and #t for #:recursive-dev-dependencies?
in the 'cargo-recursive-import' test.
(test-root-dependencies): Add intermediate-c as dev-dependency.
(test-intermediate-c-crate, test-intermediate-c-dependencies): New
variables.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: Iae89794681155d77f128733120e60f03bc297717
* guix/import/crate.scm (crate-recursive-import): Apply memoize outside the
lambda passed to recursive-import in order to actually use the memoization.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* guix/build/zig-build-system.scm (zig-cross-build): New function
(lower): Add cross-compilation support
* guix/build-system/zig.scm (build): Add --target flag with target input
(check): Disable with cross compilation
Change-Id: I5f42ff897bfe00c92c6576900221a15ef210d669
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add entry for
x86_64-linux-gnux32.
* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Add
configure-flag for x86_64-linux-gnux32.
* guix/platforms/x86.scm (x86_64-linux-gnux32): New variable.
* guix/utils.scm (gnu-triplet->nix-system): Force x86_64-linux-gnux32 to
output a different nix-system than x86_64-linux-gnu.
Change-Id: I519fea2f8357e4b9895ede05fe8a5e373e9b034a
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
This fixes a regression introduced in commit
e6223017d9 causing the selected input style to
be ignored.
* guix/import/cran.scm (format-inputs): New procedure.
(maybe-inputs): Use it.
Change-Id: I0d36f972fcb9888ed2be4ec9360bbcab13c25c5d
* guix/download.scm (%mirrors): Remove several vanished hosts and all
FTP URLs. Use HTTPS where supported. Add some new HTTPS mirrors.
Change-Id: Ie707e92ae65b8a3287d941e3e6ffb84592417b95
Fixes <https://issues.guix.gnu.org/67175>.
* guix/least-authority.scm (least-authority-wrapper): Add #:user
and #:group.
[code]: Add calls to ‘setgid’ and ‘setuid’ when appropriate.
Change-Id: I2aad8e5686b42b5c92fc306b114c5c60cb8bc551
This allows users of this module to provide e.g. caching alternatives to the
download and fetch procedures.
* guix/import/cran.scm (%bioconductor-version, download, fetch-description):
Make these variables public.
Change-Id: I9ce14db9be9b8b3314b06fa9eb50a4e24c5dd718
Importing host-side (json …) modules would make builds dependent on the
Guile-JSON version currently installed by the user. Use
‘with-extensions’ instead.
* guix/build-system/composer.scm (%composer-build-system-modules):
Remove (json …) modules.
(composer-build)[guile-json]: New variable.
[builder]: Wrap body in ‘with-extensions’.
Change-Id: Ibe565572d60481b31292d73c6fa23d42aa3ceecb
* guix/build-system/mix.scm: New file.
* guix/build/mix-build-system.scm: New file.
Change-Id: I8066d00f7ada4a384621bf541e679bc512e93435
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
* guix/import/go.scm (go-package, go.mod-go-version): New procedures.
(go-module->guix-package): Add the #:go keyword in the generated package
definition if the required go is newer than the default go.
* tests/go.scm (mock-http-get): Use gexps for package arguments.
Change-Id: I8d005740a442330ac307a40a53764c803ceffc4f
* guix/import/go.scm (parse-go.mod)[define-peg-patern require]: Adjust
the peg pattern to reject lines with the 'indirect' comment in them.
Change-Id: I9618bbaa1cb8c6549ced875e3c8d32afc72c3b9b
* guix/build/syscalls.scm (clone): Add an entry for riscv64.
This allows the use of --container on riscv64.
Change-Id: I12b3cb5e2aa248266d006b6e456082f4ddc70e62
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
The goal is to make it easier to diagnose substitute
misconfiguration (where we’re passing a substitute URL whose
corresponding key is not authorized).
Suggested by Emmanuel Agullo.
* guix/scripts/weather.scm (check-narinfo-authorization): New procedure.
(report-server-coverage): Use it.
* doc/guix.texi (Invoking guix weather): Document it.
(Getting Substitutes from Other Servers): Add “Troubleshooting” frame.
Change-Id: I0a049c39eefb10d6a06634c8b16aa86902769791
* guix/scripts/challenge.scm (%default-options): Remove ‘substitute-urls’.
(guix-challenge): Call ‘substitute-urls’ when OPTS doesn’t have it. Warn
when ‘substitute-urls’ returns #f.
Change-Id: I49be0e89404c1889970a3430967fbb3498d35d99
* guix/build/cargo-build-system.scm (configure): Use .cargo/config as
the config file. Add a note.
Change-Id: Ice006c11184d4c8e1bdb765c3998b06ad299e55b
