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50125 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
0308944ab0
gnu: java-snappy: Don't use unstable tarball. 
* gnu/packages/java-compression.scm (java-snappy)[source]: Use GIT-FETCH
and GIT-FILE-NAME.
[arguments]: Add ‘make-git-checkout-writable’ phase.
 2020-03-12 04:57:40 +01:00
Tobias Geerinckx-Rice
ca0fe294d6
gnu: java-snappy: Update to 1.1.7.3. 
* gnu/packages/java-compression.scm (java-snappy): Update to 1.1.7.3.
 2020-03-12 04:57:39 +01:00
Leo Famulari
d7af0202a4
gnu: Borg: Update to 1.1.11. 
* gnu/packages/backup.scm (borg): Update to 1.1.11.
 2020-03-11 21:39:23 -04:00
Leo Famulari
4b5a0c0540
gnu: xxHash: Update to 0.7.3. 
* gnu/packages/digest.scm (xxhash): Update to 0.7.3.
 2020-03-11 21:39:16 -04:00
Marius Bakke
41c6e4f2b4
Merge branch 'master' into staging 2020-03-11 22:58:11 +01:00
Marius Bakke
58363ee500
gnu: Remove year range from copyright header. 
* gnu/packages/python-xyz.scm: List years explicitly instead of range in
copyright line.
 2020-03-11 22:56:51 +01:00
Marius Bakke
0a8655e6dc
gnu: Remove duplicate copyright line. 
* gnu/packages/python-xyz.scm: Remove duplicate copyright.
 2020-03-11 22:56:27 +01:00
Marius Bakke
cb18f2bf31
gnu: python-cookies: Use the correct version of pytest. 
* gnu/packages/python-web.scm (python-cookies)[native-inputs]: Change
PYTHON2-PYTEST to PYTHON-PYTEST.
 2020-03-11 22:43:45 +01:00
Marius Bakke
6bd7d4cb74
gnu: python2-radon: Fix build. 
* gnu/packages/python-xyz.scm (python-radon)[properties]: New field.
* gnu/packages/python-xyz.scm (python2-radon)[propagated-inputs]: Add
PYTHON2-CONFIGPARSER and PYTHON2-FUTURE.
 2020-03-11 22:43:45 +01:00
Marius Bakke
6006727974
gnu: python-virtualenv: Update to 20.0.10. 
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.10.
 2020-03-11 22:43:44 +01:00
Marius Bakke
7815afc958
gnu: python2-virtualenv: Fix build. 
* gnu/packages/python-xyz.scm (python-virtualenv)[properties]: New field.
(python2-virtualenv)[propagated-inputs]: Add PYTHON2-CONTEXTLIB2.
[arguments]: New field.
 2020-03-11 22:43:44 +01:00
Marius Bakke
ebd4c25178
gnu: python-contextlib2: Update to 0.6.0.post1. 
* gnu/packages/python-xyz.scm (python-contextlib2): Update to 0.6.0.post1.
 2020-03-11 22:43:44 +01:00
Leo Famulari
c03fc422b9
gnu: lpd8editor: Remove package. 
This package has not built successfully in several months.

* gnu/packages/music.scm (lpd8editor): Remove variable.
 2020-03-11 15:27:17 -04:00
Christopher Lemmer Webber
dfe15d9919
gnu: Add xa. 
* gnu/packages/assembly.scm (xa): New variable.
 2020-03-11 15:13:30 -04:00
Guillaume Le Vaillant
f7f67495ba
gnu: spatialite-gui: Fix GUI not showing up. 
* gnu/packages/geo.scm (spatialite-gui)[arguments]: Add 'fix-gui' phase.
 2020-03-11 19:33:25 +01:00
Marius Bakke
f8cbe98e65
gnu: isc-dhcp: Fix cross-compilation. 
* gnu/packages/admin.scm (isc-dhcp)[arguments]: Set BUILD_CC in
'fix-bind-cross-compilation' phase.  While at it, make the phase conditional
on %CURRENT-TARGET-SYSTEM.
 2020-03-11 19:02:46 +01:00
Marius Bakke
805ac43c94
gnu: zile: Fix cross-compilation. 
* gnu/packages/zile.scm (zile)[native-inputs]: Add THIS-PACKAGE when
cross-compiling.
[arguments]: Add phase when cross-compiling.
 2020-03-11 18:58:48 +01:00
Marius Bakke
1ed3b845f7
gnu: python-multidict: Update to 4.7.5. 
* gnu/packages/python-xyz.scm (python-multidict): Update to 4.7.5.
[arguments]: New field.
[native-inputs]: Remove PYTHON-PYTEST-RUNNER.  Add PYTHON-PYTEST-COV.
 2020-03-11 18:56:46 +01:00
Damien Cassou
ad2c0f5b09
gnu: Add clipmenu. 
* gnu/packages/xdisorg.scm (clipmenu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-11 18:42:09 +01:00
Damien Cassou
51f187bee5
gnu: Add clipnotify. 
* gnu/packages/xdisorg.scm (clipnotify): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-11 18:42:09 +01:00
Mădălin Ionel Patrașcu
10c2ca9e4a
gnu: Add r-hrbrthemes. 
* gnu/packages/cran.scm (r-hrbrthemes): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-03-11 18:00:36 +01:00
Marius Bakke
4510aeb91c
gnu: python2-sphinx: Build with python-docutils@0.14. 
* gnu/packages/python-xyz.scm (python2-docutils-0.14): New public variable.
* gnu/packages/sphinx.scm (python2-sphinx)[propagated-inputs]: Change from
PYTHON2-DOCUTILS to PYTHON2-DOCUTILS-0.14.
 2020-03-11 17:46:04 +01:00
Marius Bakke
e8df88003d
gnu: gnutls@3.6.10: Add dependency on datefudge and util-linux. 
* gnu/packages/tls.scm (gnutls-3.6.10)[native-inputs]: New field.
 2020-03-11 17:44:06 +01:00
Carl Dong
cdf00cf75d
gnu: nsis: Update to 3.05. 
* gnu/packages/installers.scm (nsis): Update to 3.05.
 2020-03-11 11:42:22 -04:00
Raghav Gururajan
e05ce17dbc
gnu: Add phodav. 
* gnu/packages/gnome.scm (phodav): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-03-11 16:12:45 +01:00
Efraim Flashner
d9a2a255f9
gnu: python-pybedtools: Update to 0.8.1. 
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.8.1.
[arguments]: Add another test to the 'disable-broken-tests phase.
(python2-pybedtools)[native-inputs]: Add python2-pathlib.
 2020-03-11 16:31:33 +02:00
Efraim Flashner
afb877847b
gnu: Add python2-pygraphviz. 
* gnu/packages/graphviz.scm (python2-pygraphviz): New variable.
 2020-03-11 16:23:52 +02:00
Efraim Flashner
173053790c
gnu: python-pyfaidx: Update to 0.5.8. 
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.8.
 2020-03-11 15:45:33 +02:00
Efraim Flashner
ea2822d7d6
gnu: Add python2-pyfaidx. 
* gnu/packages/bioinformatics.scm (python2-pyfaidx): New variable.
 2020-03-11 15:43:50 +02:00
Efraim Flashner
578e4cf465
gnu: python2-ipykernel: Downgrade to 4.10.1. 
This is the last version actually supported by ipykernel.

* gnu/packages/python-xyz.scm (python2-ipython): Downgrade to 4.10.1.
[arguments]: Remove custom 'check phase.
[propagated-inputs]: Add python2-tornado, python2-traitlets.
[native-inputs]: Add python2-mock, python2-pytest-cov.
(python-ipykernel)[properties): Declare python2-ipykernel as the
python2- variant.
 2020-03-11 15:19:54 +02:00
Efraim Flashner
2bc5d5d57e
gnu: python-ipython: Declare python2 variant. 
* gnu/packages/python-xyz.scm (python-ipython)[properties]: Declare
python2-ipython as the python2- variant.
 2020-03-11 15:07:27 +02:00
Danny Milosavljevic
f255a193be
gnu: docker: Update to 19.03.7. 
* gnu/packages/docker.scm (docker): Update to 19.03.7.
(docker-cli): Update to 19.03.7.
 2020-03-11 12:07:19 +01:00
Roel Janssen
e4b5bdf799
gnu: r-ggsignif: Fix build. 
* gnu/packages/cran.scm (r-ggsignif): Add knitr to native-inputs in order to
  build the vignette.
 2020-03-11 09:31:26 +01:00
Tobias Geerinckx-Rice
d716a4742a
gnu: t1lib: Use HTTPS home page. 
* gnu/packages/fontutils.scm (t1lib)[home-page]: Use HTTPS.
 2020-03-11 03:52:12 +01:00
Tobias Geerinckx-Rice
8b6d893d17
gnu: desktop-file-utils: Update to 0.24. 
* gnu/packages/freedesktop.scm (desktop-file-utils): Update to 0.24.
 2020-03-11 03:52:12 +01:00
Tobias Geerinckx-Rice
d4c09245ec
gnu: desktop-file-utils: Don't use NAME in source URI. 
* gnu/packages/freedesktop.scm (desktop-file-utils)[source]: Hard-code NAME.
 2020-03-11 03:52:12 +01:00
Tobias Geerinckx-Rice
ec63b5a4c7
gnu: you-get: Update to 0.4.1410. 
* gnu/packages/video.scm (you-get): Update to 0.4.1410.
 2020-03-11 03:24:14 +01:00
Tobias Geerinckx-Rice
6ef143ef6e
gnu: fortune-mod: Use HTTPS home page. 
* gnu/packages/games.scm (fortune-mod)[home-page]: Use HTTPS.
 2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice
6c82576e6d
gnu: grue-hunter: Use HTTPS home page. 
* gnu/packages/games.scm (grue-hunter)[home-page]: Use HTTPS.
 2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice
76dc85e48c
gnu: emulation-station: Use HTTPS home page. 
* gnu/packages/emulators.scm (emulation-station)[home-page]: Use HTTPS.
 2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice
68ad2a785e
gnu: dfu-programmer: Use HTTPS home page. 
* gnu/packages/flashing-tools.scm (dfu-programmer)[home-page]: Use HTTPS.
 2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice
0087a2506f
gnu: rocksdb: Use HTTPS home page. 
* gnu/packages/databases.scm (rocksdb)[home-page]: Use HTTPS.
 2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice
e42399e80e
gnu: soundconverter: Use HTTPS home page. 
* gnu/packages/gnome.scm (soundconverter)[home-page]: Use HTTPS.
 2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice
44184f3356
gnu: gd: Use HTTPS home page. 
* gnu/packages/gd.scm (gd)[home-page]: Use HTTPS.
 2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice
2d3da18613
gnu: python-tomlkit: Fix typos in descriptions. 
* gnu/packages/python-xyz.scm (python-tomlkit)[synopsis, description]:
Fix typos.
 2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice
f4b6ce2155
gnu: python-tomlkit: Update to 0.5.11. 
* gnu/packages/python-xyz.scm (python-tomlkit): Update to 0.5.11.
 2020-03-11 03:01:44 +01:00
Tobias Geerinckx-Rice
cebfc26986
gnu: gpxsee: Extend description. 
* gnu/packages/gps.scm (gpxsee)[description]: Extend.
 2020-03-11 03:01:44 +01:00
Tobias Geerinckx-Rice
3437fe1fb7
gnu: gpxsee: Update to 7.25. 
* gnu/packages/gps.scm (gpxsee): Update to 7.25.
 2020-03-11 02:55:15 +01:00
Tobias Geerinckx-Rice
49bb3a56e4
gnu: batctl: Update to 2020.0. 
* gnu/packages/networking.scm (batctl): Update to 2020.0.
 2020-03-11 02:55:15 +01:00
Tobias Geerinckx-Rice
57f85eef46
gnu: gimp: Update to 2.10.18. 
* gnu/packages/gimp.scm (gimp): Update to 2.10.18.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
b3ca0ee1bb
gnu: gegl: Update to 0.4.22. 
* gnu/packages/gimp.scm (gegl): Update to 0.4.22.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
06271fe3ce
gnu: armagetronad: Update to 0.2.8.3.5. 
* gnu/packages/games.scm (armagetronad): Update to 0.2.8.3.5.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
d64d8abb5b
gnu: gx: Update to 0.14.3. 
* gnu/packages/ipfs.scm (gx): Update to 0.14.3.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
9d9da65f15
gnu: nethack: Update to 3.6.6. 
* gnu/packages/games.scm (nethack): Update to 3.6.6.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
806b0c2c6e
gnu: graphene: Use HTTPS home page. 
* gnu/packages/gtk.scm (graphene)[home-page]: Use HTTPS.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
519dc88c75
gnu: signify: Update to 29. 
* gnu/packages/crypto.scm (signify): Update to 29.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
1fc2a81ef9
gnu: execline: Update to 2.6.0.0. 
* gnu/packages/skarnet.scm (execline): Update to 2.6.0.0.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
aeca60707a
gnu: freealut: Use HTTPS home page. 
* gnu/packages/audio.scm (freealut)[home-page]: Use HTTPS.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
8173e7a02a
gnu: git-flow: Use HTTPS home page. 
* gnu/packages/version-control.scm (git-flow)[home-page]: Use HTTPS.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
d518851710
gnu: Use HTTPS for archive.xfce.org sources. 
* gnu/packages/xfce.scm (gtk-xfce-engine, xfce4-xkb-plugin)
(xfce4-settings, thunar, ristretto, orage, xfburn, mousepad)
(xfce4-screenshooter, xfce4-screensaver, xfce4-cpugraph-plugin)
(xfce4-eyes-plugin, xfce4-equake-plugin, xfce4-datetime-plugin)
(xfce4-calculator-plugin, xfce4-cpufreq-plugin, xfce4-diskperf-plugin)
(xfce4-embed-plugin, xfce4-fsguard-plugin, xfce4-genmon-plugin)
(xfce4-kbdleds-plugin, xfce4-mailwatch-plugin, xfce4-mpc-plugin)
(xfce4-mount-plugin, xfce4-netload-plugin, xfce4-places-plugin)
(xfce4-smartbookmark-plugin, xfce4-statusnotifier-plugin)
(xfce4-stopwatch-plugin, xfce4-systemload-plugin)
(xfce4-time-out-plugin, xfce4-timer-plugin, xfce4-verve-plugin)
(xfce4-wavelan-plugin, xfce4-weather-plugin))[source]: Use HTTPS.
 2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice
19153f2915
gnu: xfce4-statusnotifier-plugin: Update to 0.2.2. 
* gnu/packages/xfce.scm (xfce4-statusnotifier-plugin): Update to 0.2.2.
 2020-03-11 00:13:55 +01:00
Tobias Geerinckx-Rice
c9cd6d2fb2
gnu: Use HTTPS for skarnet.org sources. 
* gnu/packages/skarnet.scm (skalibs, execline, s6, s6-dns)
(s6-networking, s6-rc, s6-portable-utils, s6-linux-init, s6-linux-utils)
[source]: Use HTTPS.
 2020-03-11 00:13:55 +01:00
Tobias Geerinckx-Rice
b486bf7811
gnu: skalibs: Update to 2.9.2.0. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.9.2.0.
 2020-03-11 00:13:55 +01:00
Tobias Geerinckx-Rice
92a4f18f07
gnu: s6-dns: Update to 2.3.2.0. 
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.2.0.
 2020-03-11 00:13:55 +01:00
Leo Famulari
7cfcc38f41
gnu: Certbot, python-acme: Update to 1.3.0. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.3.0.
 2020-03-10 18:35:57 -04:00
Björn Höfling
60f5ab0bb6
gnu: java-osgi-namespace-contract: Update source URI. 
* gnu/packages/java.scm (java-osgi-namespace-contract)[source]: Update URI.
 2020-03-10 23:35:13 +01:00
Björn Höfling
ec11dcfe69
gnu: java-forester-1.005: Update source URI. 
* gnu/packages/bioinformatics.scm (java-forester-1.005)[source]: Update URI.
[native-inputs]: Wrap long line.
 2020-03-10 23:35:13 +01:00
Björn Höfling
9f5eeb879f
gnu: java-jlargearrays: Update source URI. 
* gnu/packages/algebra.scm (java-jlargearrays)[source]: Update URI.
 2020-03-10 23:35:12 +01:00
Björn Höfling
4c87770442
gnu: java-jtransforms: Update source URI. 
* gnu/packages/algebra.scm (java-jtransforms)[source]: Update URI.
 2020-03-10 23:35:12 +01:00
Tobias Geerinckx-Rice
f613a338d0
gnu: hplip: Update to 3.20.3. 
* gnu/packages/cups.scm (hplip): Update to 3.20.3.
 2020-03-10 22:23:12 +01:00
Tobias Geerinckx-Rice
8e486e808c
gnu: ruby-minitest-rg: Use HTTPS home page. 
* gnu/packages/ruby.scm (ruby-minitest-rg)[home-page]: Use HTTPS.
 2020-03-10 22:23:12 +01:00
Tobias Geerinckx-Rice
2bc8143f6c
gnu: python-wxpython: Use HTTPS home page. 
* gnu/packages/wxwidgets.scm (python-wxpython)[home-page]: Use HTTPS.
 2020-03-10 22:23:12 +01:00
Tobias Geerinckx-Rice
1e4ae5511a
gnu: java-asm: Use HTTPS home page. 
* gnu/packages/java.scm (java-asm)[home-page]: Use HTTPS.
 2020-03-10 22:23:11 +01:00
Tobias Geerinckx-Rice
a8a8a3df30
gnu: bash-tap: Use HTTPS home page. 
* gnu/packages/bash.scm (bash-tap)[home-page]: Use HTTPS.
 2020-03-10 22:23:11 +01:00
Tobias Geerinckx-Rice
e4c60dcfb2
gnu: tlp: Use HTTPS home page. 
* gnu/packages/linux.scm (tlp)[home-page]: Use HTTPS.
 2020-03-10 22:23:11 +01:00
Tobias Geerinckx-Rice
6048241f10
gnu: hplip: Update source hash. 
The tarball was modified in-place.
See <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=40017>.

* gnu/packages/cups.scm (hplip)[source]: Update tarball hash.

Reported-by: Mark H Weaver <mhw@netris.org>
 2020-03-10 22:02:19 +01:00
Tobias Geerinckx-Rice
f9a69e9bae
gnu: openmpi: Use HTTPS home page. 
* gnu/packages/mpi.scm (openmpi)[home-page]: Use HTTPS.
 2020-03-10 22:02:19 +01:00
Tobias Geerinckx-Rice
9dd7082c48
gnu: openmpi: Update to 4.0.3. 
* gnu/packages/mpi.scm (openmpi): Update to 4.0.3.
 2020-03-10 22:02:19 +01:00
Nicolas Goaziou
c3945380d9
gnu: asymptote: Update to 2.64. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.64.
 2020-03-10 22:01:00 +01:00
Marius Bakke
2d421c4f19
Merge branch 'master' into staging 2020-03-10 20:45:24 +01:00
Carl Dong
90799c35bd
gnu: bitcoin-core: Update to 0.19.1. 
* gnu/packages/finance.scm (bitcoin-core): Update to 0.19.1.

Co-Authored-By: fanquake <fanquake@gmail.com>
 2020-03-10 15:27:53 -04:00
Marius Bakke
944e3502b1
gnu: mercurial: Enable more tests. 
* gnu/packages/version-control.scm (mercurial)[arguments]: Add phase
'patch-tests'.  Do not remove patched tests in the 'check' phase.
 2020-03-10 20:26:17 +01:00
Ludovic Courtès
79093034b9
gnu: guix: Update to 0984481. 
* gnu/packages/package-management.scm (guix): Update to 0984481.
 2020-03-10 19:48:24 +01:00
Mark H Weaver
c90c0bd538
gnu: icecat: Update to 68.6.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2019-20503, CVE-2020-6805, CVE-2020-6806,
CVE-2020-6807, CVE-2020-6811, CVE-2020-6812, and CVE-2020-6814.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
 2020-03-10 13:45:43 -04:00
Ludovic Courtès
09844816c7
vm: Compute UUIDs truly deterministically. 
This is a followup to 1540075c79.
The mistake had no effect on prior Guile versions but it's visible since
Guile 3.0.1 and the fix for <https://bugs.gnu.org/39634>.

* gnu/system/vm.scm (operating-system-uuid): Hash a list of
'file-system-digest' values, not the 'file-system-type' procedure.
 2020-03-10 18:16:39 +01:00
Ludovic Courtès
98619142b8
gnu: guile-next: Update to 3.0.1 with bug-fix for crash. 
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1 with
"guile-3.0-crash.patch".
* gnu/packages/patches/guile-3.0-crash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
 2020-03-10 18:16:39 +01:00
Nicolas Goaziou
0e20e2c387
gnu: emacs-xr: Update to 1.18. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.18.
 2020-03-10 16:20:02 +01:00
Ricardo Wurmus
49a221151c
gnu: Add r-ppcor. 
* gnu/packages/cran.scm (r-ppcor): New variable.
 2020-03-10 15:15:02 +01:00
Guillaume Le Vaillant
06c8638830
gnu: monero-gui: Update to 0.15.0.4. 
* gnu/packages/finance.scm (monero-gui): Update to 0.15.0.4.
 2020-03-10 13:55:20 +01:00
Guillaume Le Vaillant
fc3aa11385
gnu: monero: Update to 0.15.0.5. 
* gnu/packages/finance.scm (monero): Update to 0.15.0.5.
 2020-03-10 13:55:20 +01:00
Tobias Geerinckx-Rice
75c33c888a
gnu: mars: Fix home page. 
* gnu/packages/games.scm (mars)[home-page]: Use working domain & HTTPS.
 2020-03-10 12:06:51 +01:00
Tobias Geerinckx-Rice
76fcbb7887
gnu: ode: Use HTTPS home page. 
* gnu/packages/game-development.scm (ode)[home-page]: Use HTTPS.
 2020-03-10 12:06:51 +01:00
Tobias Geerinckx-Rice
680e803d66
gnu: xmobar: Use HTTPS home page. 
* gnu/packages/wm.scm (xmobar)[home-page]: Use HTTPS.
 2020-03-10 12:06:51 +01:00
Tobias Geerinckx-Rice
fdfe65b74c
gnu: gitolite: Use HTTPS home page. 
* gnu/packages/version-control.scm (gitolite)[home-page]: Use HTTPS.
 2020-03-10 12:06:50 +01:00
Tobias Geerinckx-Rice
e48ae0bcf9
gnu: font-dosis: Use archive.org'd URIs. 
* gnu/packages/fonts.scm (font-dosis)[source, home-page]: Use snapshots.
 2020-03-10 12:06:50 +01:00
Tobias Geerinckx-Rice
828996bb8a
gnu: python-virtualenv: Propagate inputs. 
* gnu/packages/python-xyz.scm (python-virtualenv)[inputs]: Make…
[propagated-inputs]: …this.
 2020-03-10 12:06:50 +01:00
Kyle Meyer
80b2825d95
gnu: git-annex: Update to 8.20200309. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200309.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-03-10 10:56:45 +02:00
Michael Rohleder
ba726ebc2d
gnu: mumble: Disable statistic gathering by default. 
Fixes <https://bugs.gnu.org/25201>

* gnu/packages/telephone.scm (mumble)[arguments]: Add phase to disable
statistic gathering by default.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-03-10 10:54:48 +02:00
Tobias Geerinckx-Rice
43d4eb8fc4
gnu: r-sparselda: Use HTTPS home page. 
* gnu/packages/cran.scm (r-sparselda)[home-page]: Use HTTPS.
 2020-03-10 00:12:10 +01:00
Tobias Geerinckx-Rice
369e4e9660
gnu: r-spams: Use HTTPS home page. 
Well, it currently redirects back to HTTP…

* gnu/packages/statistics.scm (r-spams)[home-page]: Use ‘HTTPS’.
 2020-03-10 00:12:10 +01:00
Tobias Geerinckx-Rice
57a2a5015b
gnu: r-fda: Use HTTPS home page. 
* gnu/packages/cran.scm (r-fda)[home-page]: Use HTTPS.
 2020-03-10 00:12:09 +01:00
Tobias Geerinckx-Rice
b0c62de87f
gnu: r-mcmc: Use HTTPS home page. 
* gnu/packages/cran.scm (r-mcmc)[home-page]: Use HTTPS.
 2020-03-10 00:12:08 +01:00
Tobias Geerinckx-Rice
b32a3e1dbf
gnu: r-varselrf: Update home page. 
* gnu/packages/cran.scm (r-varselrf)[home-page]: Follow (HTTPS)
redirection.
 2020-03-10 00:12:08 +01:00
Tobias Geerinckx-Rice
3a18b1cc2e
gnu: r-knitr: Update home page. 
* gnu/packages/statistics.scm (r-knitr)[home-page]: Follow (HTTPS)
redirection.
 2020-03-10 00:12:07 +01:00
Tobias Geerinckx-Rice
b1d3e63bc2
gnu: r-ouch: Use HTTPS home page. 
* gnu/packages/cran.scm (r-ouch)[home-page]: Use HTTPS.
 2020-03-10 00:12:07 +01:00
Tobias Geerinckx-Rice
56451c7894
gnu: libinput: Note libinput-minimal inheritance. 
* gnu/packages/freedesktop.scm (libinput): Add a warning comment.
 2020-03-10 00:12:06 +01:00
Tobias Geerinckx-Rice
ef617dedd2
gnu: csvkit: Update to 1.0.5. 
* gnu/packages/wireservice.scm (csvkit): Update to 1.0.5.
[source]: Remove upstreamed patch.
* gnu/packages/patches/csvkit-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice
77dbc1c537
gnu: slang: Use HTTPS home page. 
* gnu/packages/slang.scm (slang)[home-page]: Use HTTPS.
 2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice
59e884a211
gnu: polipo: Use HTTPS home page. 
* gnu/packages/web.scm (polipo)[home-page]: Use HTTPS.
 2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice
1bcf4ba44b
gnu: iperf: Use HTTPS home page. 
* gnu/packages/networking.scm (iperf)[home-page]: Use HTTPS.
 2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice
91fa58c739
gnu: xdotool: Use HTTPS home page. 
* gnu/packages/xdisorg.scm (xdotool)[home-page]: Use HTTPS.
 2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice
0622403d35
gnu: compface: Update home page. 
* gnu/packages/mail.scm (compface)[home-page]: Follow (HTTPS)
redirection.
 2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice
f30444b9da
gnu: compface: Don't use NAME in source URI. 
* gnu/packages/mail.scm (compface)[source]: Hard-code NAME.
 2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice
88c6a1812c
gnu: Use HTTPS for rstudio.github.io home pages. 
* gnu/packages/cran.scm (r-shinydashboard, r-shinythemes, r-dt)
[home-page]: Use HTTPS.
 2020-03-09 23:55:41 +01:00
Ludovic Courtès
827abd5deb
tests: getmail: Provide a pre-initialized user account password. 
* gnu/tests/mail.scm (%getmail-os): Rewrite so that the "alice" account
has a password.
(run-getmail-test)[test]("set password for alice"): Remove.  This would
not work since commit 8b9cad01e9 since
'passwd' would no longer be in $PATH.
 2020-03-09 23:46:36 +01:00
Ludovic Courtès
0e42a1643e
tests: docker-system: Increase memory requirement. 
The system image would no longer fit in memory, starting from commit
8c7eb58453.

* gnu/tests/docker.scm (run-docker-system-test): Set 'memory-size' to 3500.
 2020-03-09 23:46:36 +01:00
Ludovic Courtès
7e5f016cdb
tests: zabbix: Set 'PATH' before running the scripts. 
This is a followup to 8b9cad01e9.

* gnu/tests/monitoring.scm (run-zabbix-server-test)[test]: Set 'PATH' in
MARIONETTE.
 2020-03-09 23:46:36 +01:00
Ludovic Courtès
8a49e63b2d
gnu: Add rr. 
* gnu/packages/debug.scm (rr): New variable.
 2020-03-09 23:46:36 +01:00
Marius Bakke
b3b5714fa7
Merge branch 'master' into staging 2020-03-09 21:45:32 +01:00
Tobias Geerinckx-Rice
51f30d4fdf
Revert "gnu: libinput: Update to 1.15.3." 
This reverts commit 1fad0b8674.
It rebuilds the world through libinput-minimal.
 2020-03-09 21:26:58 +01:00
Tobias Geerinckx-Rice
18d59640e1
gnu: python-sphinxcontrib-websupport: Update to 1.2.0. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-websupport): Update to
1.2.0.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
11be15730c
gnu: python-sphinxcontrib-serializinghtml: Update to 1.1.4. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-serializinghtml): Update
to 1.1.4.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
99533bebac
gnu: python-sphinxcontrib-qthelp: Update to 1.0.3. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-qthelp): Update to 1.0.3.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
25b576a9db
gnu: python-sphinxcontrib-htmlhelp: Update to 1.0.3. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-htmlhelp): Update to 1.0.3.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
ccac5118f7
gnu: python-sphinxcontrib-devhelp: Update to 1.0.2. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-devhelp): Update to 1.0.2.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
f49b8c14fb
gnu: python-sphinxcontrib-applehelp: Update to 1.0.2. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-applehelp): Update to 1.0.2.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
a0093a71c5
gnu: youtube-dl: Update to 2020.03.08. 
* gnu/packages/video.scm (youtube-dl): Update to 2020.03.08.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
9d7a3562c2
gnu: perl-catalyst-devel: Update to 1.40. 
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.40.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
99e8ce528c
gnu: spice-protocol: Update to 0.14.1. 
* gnu/packages/spice.scm (spice-protocol): Update to 0.14.1.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
e4e44f24bd
gnu: perl-timedate: Update to 2.32. 
* gnu/packages/perl.scm (perl-timedate): Update to 2.32.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
0e591daa81
gnu: perl-xs-object-magic: Update to 0.05. 
* gnu/packages/perl.scm (perl-xs-object-magic): Update to 0.05.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
2317f330e8
gnu: perl-datetime-format-strptime: Update to 1.77. 
* gnu/packages/perl.scm (perl-datetime-format-strptime): Update to 1.77.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
940f9c75a6
gnu: perl-datetime: Update to 1.52. 
* gnu/packages/perl.scm (perl-datetime): Update to 1.52.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
3a83862db0
gnu: man-db: Update to 2.9.1. 
* gnu/packages/man.scm (man-db): Update to 2.9.1.
 2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice
c3bde0b7af
gnu: libseccomp: Update to 2.4.3. 
* gnu/packages/linux.scm (libseccomp): Update to 2.4.3.
[source]: Remove upstreamed patch.
* gnu/packages/patches/libseccomp-open-aarch64.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
1fad0b8674
gnu: libinput: Update to 1.15.3. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.15.3.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
4227a73189
gnu: libostree: Update to 2020.2. 
* gnu/packages/package-management.scm (libostree): Update to 2020.2.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
cf566106b6
gnu: tcsh: Use HTTPS home page. 
* gnu/packages/shells.scm (tcsh)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
a0087cf58d
gnu: mit-krb5: Use HTTPS home page. 
* gnu/packages/kerberos.scm (mit-krb5)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
80fafdba1c
gnu: speedcrunch: Use HTTPS home page. 
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
ef752646aa
gnu: ding: Use HTTPS home page. 
* gnu/packages/dictionaries.scm (ding)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
b3851745f1
gnu: plotutils: Use HTTPS home page. 
* gnu/packages/plotutils.scm (plotutils)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
17dea2e279
gnu: idris: Use HTTPS home page. 
* gnu/packages/idris.scm (idris)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
8a34536f00
gnu: xfce4-power-manager: Update to 1.7.0. 
* gnu/packages/xfce.scm (xfce4-power-manager): Update to 1.7.0.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
0babcd9d83
gnu: xfce4-power-manager: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (xfce4-power-manager)[source]: Hard-code NAME.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
d4e8859ba5
gnu: xfburn: Update to 0.6.2. 
* gnu/packages/xfce.scm (xfburn): Update to 0.6.2.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
7ae397ac14
gnu: claws-mail: Update to 3.17.5. 
* gnu/packages/mail.scm (claws-mail): Update to 3.17.5.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
633c32fbd9
gnu: s6: Update to 2.9.0.1. 
* gnu/packages/skarnet.scm (s6): Update to 2.9.0.1.
 2020-03-09 16:01:17 +01:00
Tobias Geerinckx-Rice
bead506555
gnu: s6-linux-init: Update to 1.0.4.0. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.4.0.
 2020-03-09 16:01:17 +01:00
Guillaume Le Vaillant
0ccc138517
gnu: Add spatialite-tools. 
* gnu/packages/geo.scm (spatialite-tools): New variable.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
133de9ab38
gnu: Add readosm. 
* gnu/packages/geo.scm (readosm): New variable.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
e8906d86ee
gnu: spatialite-gui: Add missing input. 
* gnu/packages/geo.scm (spatialite-gui)[inputs]: Add libjpeg-turbo.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
3cf0a5dc53
gnu: gdal: Update to 3.0.4. 
* gnu/packages/geo.scm (gdal): Update to 3.0.4.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
9147d1216e
gnu: proj: Update to 6.3.1. 
* gnu/packages/geo.scm (proj): Update to 6.3.1.
 2020-03-09 15:21:45 +01:00
Roel Janssen
4960c03d1d
gnu: Add perl-math-vecstat. 
* gnu/packages/perl.scm (perl-math-vecstat): New variable.
 2020-03-09 15:18:13 +01:00
Roel Janssen
b4e1ca0675
gnu: python-semver: Fix build. 
* gnu/packages/python-xyz.scm: Add python-appdirs, python-distlib,
  python-importlib-metadata, python-filelock, and python-six to native-inputs
  in order to run the test suite.
 2020-03-09 14:50:35 +01:00
Roel Janssen
c0f6446579
gnu: Fix build of python-velocyto. 
* gnu/packages/bioinformatics.scm (python-velocyto): Add python-joblib to
  native-inputs to make the test suite run succesfully.
 2020-03-09 14:34:41 +01:00
Efraim Flashner
fb29d7d70c
gnu: Add vim-asyncrun. 
* gnu/packages/vim.scm (vim-asyncrun): New variable.
 2020-03-09 14:45:38 +02:00
Efraim Flashner
61daf2dbc9
gnu: Add nyancat. 
* gnu/packages/toys.scm (nyancat): New variable.
 2020-03-09 14:31:25 +02:00
Roel Janssen
b6574660e3
gnu: Update python-statsmodels to 0.11.1. 
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1.
 2020-03-09 13:01:27 +01:00
Pierre Neidhardt
6dfc981a98
gnu: Add sycamore. 
* gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables.
 2020-03-09 10:55:46 +01:00
Pierre Neidhardt
698a34482a
gnu: emacs-sly: Update to 20200228. 
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228.
 2020-03-09 09:42:04 +01:00
Ricardo Wurmus
c3b6d61df3
gnu: r-desolve: Update to 1.28. 
* gnu/packages/cran.scm (r-desolve): Update to 1.28.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
103de43c67
gnu: r-umap: Update to 0.2.5.0. 
* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0.
[native-inputs]: Add r-knitr.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
ea20989d87
gnu: r-rcppannoy: Update to 0.0.16. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16.
[native-inputs]: Remove r-knitr.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
207ba868a3
gnu: r-quantmod: Update to 0.4-16. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
bcbcd17d45
gnu: r-vcd: Update to 1.4-6. 
* gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
fec7f576b4
gnu: r-ggrepel: Update to 0.8.2. 
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
 2020-03-09 08:51:36 +01:00
Christopher Baines
af96c1e0e4
services: cuirass: Allow passing extra command line options. 
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.

* gnu/services/cuirass.scm (<cuirass-configuration>): Add an extra-options
field.
(cuirass-shepherd-service): Pass the extra options to the shepherd servvices.
* doc/guix.texi (Continuous Integration): Document it.
 2020-03-08 23:46:11 +00:00
Christopher Baines
d8ab68b929
services: guix-data-service: Allow passing extra options. 
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.

* gnu/services/guix.scm (<guix-data-service-configuration>): Add extra-options
and extra-process-jobs-options to the record type.
(guix-data-service-shepherd-services): Handle these new configuration record
fields.
* doc/guix.texi (Guix Data Service): Document these new options.
 2020-03-08 23:35:03 +00:00
Christopher Baines
67d21e2b08
gnu: guix-data-service: Update to 0.0.1-18.18eb9df. 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df.
(inputs, native-inputs): Switch to using the Guile 3 package variants where
applicable.
 2020-03-08 23:35:00 +00:00
Jakub Kądziołka
94d57ba339
gnu: python-virtualenv: Update to 20.0.8. 
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8.
  [arguments]: Remove the now-redundant 'disable-failing-test phase.
  [native-inputs]: Add python-setuptools and python-setuptools-scm.
  [inputs]: Add python-{appdirs, distlib, filelock, six,
  importlib-metadata}.
 2020-03-09 00:20:49 +01:00
Jakub Kądziołka
6e79208954
gnu: python-xyz: Add python-filelock. 
* gnu/packages/python-xyz.scm (python-filelock): New variable.
 2020-03-09 00:20:47 +01:00
Jakub Kądziołka
f2a6483084
gnu: python-xyz: Add python-distlib. 
* gnu/packages/python-xyz.scm (python-distlib): New variable.
 2020-03-09 00:20:46 +01:00
Ricardo Wurmus
830eac9c27
gnu: ngless: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
 2020-03-08 23:37:09 +01:00
Ricardo Wurmus
3f68f76eaf
gnu: Add jack-select. 
* gnu/packages/music.scm (jack-select): New variable.
 2020-03-08 23:13:11 +01:00
Ricardo Wurmus
46a864e7c1
gnu: taxtastic: Update to 0.8.11. 
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11.
[source]: Fetch from Github.
[arguments]: Build with default Python; add phases 'prepare-directory,
'python37-compatibility, and update 'check phase.
[propagated-inputs]: Replace Python 2 variants with Python 3 variants.
 2020-03-08 22:50:16 +01:00
Ludovic Courtès
d6d0e10b3d
gnu: guile-next: Revert to 3.0.0. 
Guile 3.0.1 segfaults while building guix-system-tests.drv on
and "guile3.0-guix" on x86_64-linux.

* gnu/packages/guile.scm (guile-next): Revert to 3.0.0.
(guile-3.0):
 2020-03-08 22:15:54 +01:00
Roel Janssen
3d33ca27b2
gnu: Add perl-config-inifiles. 
* gnu/packages/perl.scm (perl-config-inifiles): New variable.
 2020-03-08 21:50:44 +01:00
Roel Janssen
d0ca79e53d
gnu: Add perl-attribute-util. 
* gnu/packages/perl.scm (perl-attribute-util): New variable.
 2020-03-08 21:50:32 +01:00
Efraim Flashner
30acf2f959
gnu: Add font-opendyslexic. 
* gnu/packages/fonts.scm (font-opendyslexic): New variable.
(font-open-dyslexic): Mark as deprecated package.
 2020-03-08 22:42:33 +02:00
Ludovic Courtès
e5059c95aa
gnu: beep: Remove dependency on GCC 8. 
* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
 2020-03-08 21:21:57 +01:00
Vincent Legoll
1d91680c84
gnu: beep: Update to 1.4.9. 
* gnu/packages/terminals.scm (beep): Update to 1.4.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Jack Hill
f6713b55a1
services: certbot: Add server option. 
* gnu/services/certbot.scm (certbot-configuration): Add server option.
(certbot-command): Use server option.
(certbot-actication): Use server option.
(certbot-nginx-server-configurations): Use server option.
* doc/guix.texi (Certificate Services): Document server option.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Brice Waegeneire
9ef37e81d6
system: Export 'operating-system' missing fields. 
* gnu/system.scm: Export 'operating-system-firmware',
'operating-system-keyboard-layout',
'operating-system-name-service-switch', 'operating-system-pam-services',
'operating-system-setuid-programs', 'operating-system-skeletons',
'operating-system-sudoers-file', 'operating-system-swap-devices'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Ludovic Courtès
1a30351bf3
gnu: guile-next: Update to 3.0.1. 
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1.  Use "mirror://" URL.
 2020-03-08 21:21:57 +01:00
Ricardo Wurmus
c32897b6e4
gnu: r-robust: Update to 0.5-0.0. 
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus
7b2acf1508
gnu: r-rapidjsonr: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus
dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
 2020-03-08 16:02:04 +01:00
Hartmut Goebel
6434f9b634
gnu: Reword and extend descriptions for some KDE packages. 
* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
  kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
  kontactinterface, kpimtextedit)[description]: Reword and extend.
  (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
  (kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
 2020-03-08 14:06:00 +01:00
Martin Becze
1eb3b2b666
gnu: Add emacs-org-journal. 
* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
 2020-03-08 11:19:16 +01:00
Roel Janssen
e2ca10a46f
gnu: python-umap-learn: Fix build. 
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
  run the test suite.
 2020-03-08 10:20:22 +01:00
Maxim Cournoyer
5fdc5b2d57
services: nfs: Run rpc.mountd in foreground. 
Fixes <https://bugs.gnu.org/39708>.

Shepherd doesn't keep track of processes that fork themselves and would
disable the process after restarting it a couple times.

* gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the
'--foreground' option.
 2020-03-08 00:26:02 -05:00
Leo Famulari
be3908fa14
gnu: QEMU: Fix CVE-2020-8608. 
* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
 2020-03-07 16:37:25 -05:00
Lars-Dominik Braun
83ac7cb42b
gnu: brotli: Remove package 
Same package is provided by google-brotli.

* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Lars-Dominik Braun
d9476a3700
gnu: woff2: Update to 1.0.2 
* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake
* gnu/packages/patches/woff2-libbrotli.patch: Remove
* gnu/local.mk (dist_patch_DATA): Remove patch

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Vincent Legoll
74ff08e6b8
gnu: ccache: Fix indentation 
* gnu/packages/ccache.scm (ccache): Fix indentation

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Vincent Legoll
9eb456b8c7
gnu: ccache: Update to 3.7.7. 
gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage
to ccache.dev, get source code from github, remove fortran 77 from
description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Ludovic Courtès
24a4a635fd
gnu: eudev: Add variant with corrected Btrfs rules. 
Discussed at <https://bugs.gnu.org/39926>.

* gnu/packages/linux.scm (eudev/btrfs-fix): New variable.
* gnu/services/base.scm (<udev-configuration>)[udev]: Default to it.
(udev-service): Likewise for #:udev.
 2020-03-07 22:30:00 +01:00
Ludovic Courtès
8ab060b68b
gnu: guile: Add 2.2.7. 
* gnu/packages/guile.scm (guile-2.2.7): New variable.
(guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7.
* gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7.
* gnu/packages/patches/guile-finalization-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-07 22:29:44 +01:00
Nicolas Goaziou
2519e4cba8
gnu: emacs-xr: Update to 1.17. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17.
 2020-03-07 21:42:45 +01:00
Nicolas Goaziou
f61b980f5d
gnu: emacs-relint: Update to 1.15. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15.
 2020-03-07 21:41:06 +01:00
Ricardo Wurmus
1c9e3e9f36
gnu: r-dplyr: Update to 0.8.5. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:55 +01:00
Ricardo Wurmus
667f799641
gnu: r-survival: Update to 3.1-11. 
* gnu/packages/statistics.scm (r-survival): Update to 3.1-11.
 2020-03-07 20:03:43 +01:00
Ricardo Wurmus
d8545835bd
gnu: r-lifecycle: Update to 0.2.0. 
* gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:32 +01:00
Ricardo Wurmus
a97c648c61
gnu: r-covr: Update to 3.5.0. 
* gnu/packages/cran.scm (r-covr): Update to 3.5.0.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:21 +01:00
Ricardo Wurmus
4882fcd292
gnu: r-pscl: Update to 1.5.5. 
* gnu/packages/cran.scm (r-pscl): Update to 1.5.5.
 2020-03-07 20:03:11 +01:00
Ricardo Wurmus
15d3ac75ce
gnu: r-mosaic: Add r-knitr. 
* gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:52 +01:00
Ricardo Wurmus
c68c7e2fbf
gnu: r-insight: Update to 0.8.2. 
* gnu/packages/cran.scm (r-insight): Update to 0.8.2.
[native-inputs]: Add r-knitr.
 2020-03-07 20:02:35 +01:00
Ricardo Wurmus
491ce4f083
gnu: r-heatmaply: Add r-knitr. 
* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:14 +01:00
Ricardo Wurmus
d56553edc3
gnu: r-methylkit: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr.
 2020-03-07 19:42:34 +01:00
Ricardo Wurmus
06fc1882f2
gnu: r-ggrepel: Add r-knitr. 
* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr.
 2020-03-07 19:38:31 +01:00
Ricardo Wurmus
67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
bf3722f9db
gnu: r-depecher: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
a2512e436b
gnu: r-xcms: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
f0aaa4482a
gnu: r-yamss: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
56bf00b94e
gnu: r-viridis: Add r-knitr. 
* gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Ricardo Wurmus
3b7c644569
gnu: r-vsn: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-vsn)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Michael Rohleder
9eed0a74f9
fd: Install bash completion properly. 
* gnu/packages/rust-apps.scm (fd)[arguments]: Replace
  the dash in "bash-completion.d" with an underscore.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 18:32:27 +01:00
Robert Smith
880a316591
gnu: anki: Fix mpv audio playback 
* gnu/packages/patches/anki-mpv-args.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/education.scm (anki): Adjust accordingly, wrap anki's
  PATH to include mpv executable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 17:29:34 +01:00
Pierre Neidhardt
262d6ed465
gnu: next: Fix build with SBCL 2.0.2. 
* gnu/packages/web-browsers.scm (next)[arguments]: Fix lambda-list type error
  on SBCL 2.0.2.
 2020-03-07 17:12:35 +01:00
Tobias Geerinckx-Rice
322ea25c56
gnu: s6-rc: Update to 0.5.1.2. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
072102f651
gnu: s6-portable-utils: Update to 2.2.2.2. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.2.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
82853fbf8c
gnu: s6-networking: Update to 2.3.1.2. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
5cecf3f4e2
gnu: s6-linux-utils: Update to 2.5.1.2. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
1d57075049
gnu: scm: Update to 5f3. 
* gnu/packages/scheme.scm (scm): Update to 5f3.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
db34ab7350
gnu: ntp: Update to 4.2.8p14 [fixes Sec 3610, Sec 3596, Sec 3592]. 
https://support.ntp.org/bin/view/Main/SecurityNotice#Recent_Vulnerabilities

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p14.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
e4a9f135f7
gnu: ntp: Use HTTPS in metadata URIs 
* gnu/packages/ntp.scm (ntp)[home-page, license]: Use HTTPS.
 2020-03-07 16:04:20 +01:00
Vincent Legoll
e7ba60ddce
gnu: unbound: Update to 1.10.0. 
* gnu/packages/dns.scm (unbound): Update to 1.10.0.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 14:51:37 +01:00
Vincent Legoll
4c8b874f95
gnu: ppp: Update to 2.4.8-1.8d45443 [fixes CVE-2020-8597]. 
* gnu/packages/samba.scm (ppp): Update to 2.4.8-1.8d45443.
Use GIT-FETCH and GIT-FILE-NAME.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-03-07 14:27:06 +01:00
Tobias Geerinckx-Rice
4f236f84a9
gnu: Use HTTPS for commons.apache.org home pages. 
* gnu/packages/java.scm (java-commons-io, java-commons-logging-minimal)
(java-commons-math3, java-commons-jxpath, java-commons-daemon)
(java-commons-net, java-commons-vfs, java-commons-beanutils)
(java-commons-lang, java-commons-lang3)[home-page]:Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
c82ddf3360
gnu: java-joda-convert: Use HTTPS home page. 
* gnu/packages/java.scm (java-joda-convert)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
4d1ddb5156
gnu: java-log4j-1.2-api: Use HTTPS home page. 
* gnu/packages/java.scm (java-log4j-1.2-api)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
c901060547
gnu: java-testng: Use HTTPS home page. 
* gnu/packages/java.scm (java-testng)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
b93a0c1e6d
gnu: java-junit: Use HTTPS home page. 
* gnu/packages/java.scm (java-junit)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
a809d63252
gnu: java-openchart2: Use HTTPS home page. 
* gnu/packages/java.scm (java-openchart2)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
a15b45290d
gnu: raincat: Update home page. 
* gnu/packages/haskell-apps.scm (raincat)[home-page]: Update.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
f23365fa2c
gnu: instantmusic: Update home page. 
* gnu/packages/music.scm (instantmusic)[home-page]: Update.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
5969598149
gnu: openblas: Use HTTPS home page. 
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
14a5146f3a
gnu: python-execnet: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-execnet)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
cc31d17263
gnu: emacs-ffap-rfc-space: Use HTTPS home page. 
* gnu/packages/emacs-xyz.scm (emacs-ffap-rfc-space)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
6a0d1bd390
gnu: librecad: Use HTTPS home page. 
* gnu/packages/engineering.scm (librecad)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
c0dc417909
gnu: spice: Update to 0.14.3. 
* gnu/packages/spice.scm (spice): Update to 0.14.3.
[source]: Remove obsolete patch.
* gnu/packages/patches/spice-fix-test-armhf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
beecf815db
gnu: xfce4-weather-plugin: Update to 0.10.1. 
* gnu/packages/xfce.scm (xfce4-weather-plugin): Update to 0.10.1.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
3a5557a4d2
gnu: xfce4-clipman-plugin: Update to 1.4.4. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin): Update to 1.4.4.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
0bbf14ce93
gnu: xfce4-clipman-plugin: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin)[source]: Hard-code NAME.
 2020-03-07 12:48:17 +01:00
Pierre Neidhardt
ece22a25b6
gnu: fmt: Switch back to url-fetch. 
* gnu/packages/pretty-print.scm (fmt)[source]: Use url-fetch instead of
  git-fetch since upstream uploads releases.  Both approaches produce the
  same package, but git-fetch requires more bandwidth.
 2020-03-07 12:37:14 +01:00
Pierre Neidhardt
0bc557fd70
gnu: cl-dbus: Remove unneeded inputs. 
* gnu/packages/lisp-xyz.scm (cl-dbus)[propagated-inputs]: Remove iolib
  subpackages now that iolib properly references them.
 2020-03-07 11:30:11 +01:00
Pierre Neidhardt
af5c4efff6
gnu: sbcl-iolib: Fix build to refer to its subpackages properly. 
* gnu/packages/lisp-xyz.scm (sbcl-iolib): Inherit from its subpackages instead
  of the other way around, so that they are automatically referenced in the
  generated .asd.
 2020-03-07 11:28:32 +01:00
Vagrant Cascadian
5fb3c00256
gnu: go-golang.org-x-sync-errgroup: Fix spelling of "cancellation". 
* gnu/packages/golang (go-golang.org-x-sync-errgroup)[synopsis]: Fix typo.
 2020-03-06 20:13:30 -08:00