Commit Graph

3455 Commits

Author SHA1 Message Date
Mădălin Ionel Patrașcu
ac32f93df3
gnu: Add r-anvil.
* gnu/packages/bioconductor.scm (r-anvil): New variable.
2023-01-22 09:16:18 +01:00
Ricardo Wurmus
9fc3e4fb26
gnu: r-speaq: Fix description.
* gnu/packages/bioconductor.scm (r-speaq)[description]: Reword.
2023-01-22 09:12:50 +01:00
Mădălin Ionel Patrașcu
3d9516344e
gnu: Add r-alpsnmr.
* gnu/packages/bioconductor.scm (r-alpsnmr): New variable.
2023-01-22 08:56:51 +01:00
Mădălin Ionel Patrașcu
b374a45eb0
gnu: Add r-speaq.
* gnu/packages/bioconductor.scm (r-speaq): New variable.
2023-01-22 08:56:51 +01:00
Navid Afkhami
072f605c12
gnu: Add r-scds.
* gnu/packages/bioconductor.scm (r-scds): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-01-20 11:01:31 +01:00
Simon Tournier
c31d8adcb0
gnu: Add r-numbat.
* gnu/packages/bioconductor.scm (r-numbat): New variable.
2023-01-20 10:44:28 +01:00
Simon Tournier
f145afd16f
gnu: Add r-scistreer.
* gnu/packages/bioconductor.scm (r-scistreer): New variable.
2023-01-20 10:44:27 +01:00
Mădălin Ionel Patrașcu
fda2d75d8d
gnu: Add r-breakpointr.
* gnu/packages/bioconductor.scm (r-breakpointr): New variable.
2023-01-18 22:43:58 +01:00
Mădălin Ionel Patrașcu
4f7ef3f528
gnu: Add r-breakpointrdata.
* gnu/packages/bioconductor.scm (r-breakpointrdata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-01-18 22:43:58 +01:00
Mădălin Ionel Patrașcu
3e1c85b7ec
gnu: Add r-maser.
* gnu/packages/bioconductor.scm (r-maser): New variable.
2023-01-14 08:13:54 +01:00
Ricardo Wurmus
8423ca9da8
gnu: r-biocset: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.12.1.
2023-01-09 23:08:36 +01:00
Ricardo Wurmus
8ee7f8df76
gnu: r-biocviews: Update to 1.66.2.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.2.
2023-01-09 23:08:36 +01:00
Ricardo Wurmus
d41e85678a
gnu: r-variancepartition: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.1.
[propagated-inputs]: Add r-remacor.
2023-01-09 23:08:36 +01:00
Ricardo Wurmus
850638df5a
gnu: r-flowworkspace: Update to 4.10.1.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.10.1.
[propagated-inputs]: Remove r-aws-s3, r-aws-signature, r-digest, r-lattice,
r-latticeextra, r-rcpp, r-rcpparmadillo, and r-rcppparallel; add
r-cpp11.
2023-01-09 23:08:36 +01:00
Ricardo Wurmus
3ac0f4e62c
gnu: r-batchelor: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.14.1.
2023-01-09 23:08:35 +01:00
Ricardo Wurmus
aca59da931
gnu: r-msnbase: Update to 2.24.2.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.24.2.
2023-01-09 23:08:35 +01:00
Ricardo Wurmus
f5629558b1
gnu: r-genomeinfodb: Update to 1.34.6.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.6.
2023-01-09 23:08:35 +01:00
Ricardo Wurmus
b37a9bfba6
gnu: r-bsgenome: Update to 1.66.2.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.2.
2023-01-09 23:08:35 +01:00
Ricardo Wurmus
3072990b03
gnu: r-biocparallel: Update to 1.32.5.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.5.
2023-01-09 23:07:58 +01:00
Ricardo Wurmus
fd4ca4a266
gnu: r-kegggraph: Update to 1.58.3.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.58.3.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
cfa8d448bc
gnu: r-scran: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.26.1.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
71c115fd94
gnu: r-scuttle: Update to 1.8.3.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.3.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
c4cbfa40d8
gnu: r-chromvar: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.1.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
68701917b8
gnu: r-s4vectors: Update to 0.36.1.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.1.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
e895da0406
gnu: r-preprocesscore: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.60.1.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
18468f775e
gnu: r-biocviews: Update to 1.66.1.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.1.
[native-inputs]: Add r-knitr.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
fc617e70e6
gnu: r-rcistarget: Update to 1.18.2.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.18.2.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
031dbcbd0e
gnu: r-opencyto: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.10.1.
[propagated-inputs]: Remove r-clue, r-flowstats, r-gtools, r-ks, r-lattice, r-mass,
r-plyr, r-r-utils, r-rcpp, and r-rrcov; add r-bh and r-cpp11.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
7edcbf84bf
gnu: r-ggcyto: Update to 1.26.4.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.26.4.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
5ac36a82e8
gnu: r-rsubread: Update to 2.12.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
90b10b37e8
gnu: r-iclusterplus: Update to 1.34.2.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
7f45db2df8
gnu: r-aucell: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.20.2.
[propagated-inputs]: Add r-matrix.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
da24c1c949
gnu: r-clusterexperiment: Update to 2.18.1.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
2e10df101f
gnu: r-enrichplot: Update to 1.18.3.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.3.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
7205384533
gnu: r-sigpathway: Update to 1.66.1.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
ceffbc313f
gnu: r-linnorm: Update to 2.22.1.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
2eb81c0888
gnu: r-lpsymphony: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.26.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
b51001141b
gnu: r-dnacopy: Update to 1.72.2.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.72.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
96508fa43a
gnu: r-glmgampoi: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
c47fd0c47c
gnu: r-diffbind: Update to 3.8.3.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.3.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
a13f5a52d0
gnu: r-oligo: Update to 1.62.1.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.62.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
9e18e3a372
gnu: r-tximport: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.26.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
dc6f9ab3ab
gnu: r-scmap: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
5fc338637b
gnu: r-lfa: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
53fb765c85
gnu: r-impute: Update to 1.72.2.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.72.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
b035f07cc2
gnu: r-genomicranges: Update to 1.50.2.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.50.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
a4362f4599
gnu: r-genomicfeatures: Update to 1.50.3.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.50.3.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
86fcb20aa8
gnu: r-genomeinfodb: Update to 1.34.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.4.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
a71a89ac39
gnu: r-genefilter: Update to 1.80.2.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.80.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
6af97fcc0e
gnu: r-edger: Update to 3.40.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.40.1.
2022-12-20 12:09:32 +01:00