Florian Pelz
cc4cb24ed5
teams: Remove Matt from their team due to inactivity.
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* etc/teams.scm (Matthew Trzcinski): Remove from the DOCUMENTATION team.
Change-Id: I6ab1f35086a2a1abc7c0436013efe223b44c7867
2024-08-26 19:11:43 +02:00
Florian Pelz
4aaa0ea06f
doc: Remove duplicate search paths instructions.
...
* doc/guix.texi (Invoking guix pull): Remove instructions
obsoleted by Binary Installation instructions.
Change-Id: I18274aa8bacd11de8ee72bd83c817f945468cc13
2024-08-26 18:40:30 +02:00
jgart
4b011ee4ab
gnu: trealla: Update to 2.55.26.
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* gnu/packages/prolog.scm (trealla): Update to 2.55.26.
Change-Id: I2a2652d2415d007fabf8974212cd35686336905f
2024-08-26 10:33:28 -05:00
jgart
714cbc84cf
gnu: trealla: Update to 2.55.25.
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* gnu/packages/prolog.scm (trealla): Update to 2.55.25.
Change-Id: I3c00edc6292c9e351ff514d3ca835236aa6c1d7e
2024-08-26 10:33:28 -05:00
Ricardo Wurmus
e6e3f185ac
gnu: r-hmmcopy: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-hmmcopy): Update to 1.46.0.
Change-Id: I26c091fe4af549b01c98aac0a1fcdb058ff4ea71
2024-08-26 14:14:07 +02:00
Spencer King
257375d36b
gnu: Add r-hmmcopy.
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* gnu/packages/bioconductor.scm (r-hmmcopy): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Iface547e865609427c356277edc904f3aec386d8
2024-08-26 14:13:56 +02:00
Spencer King
7578bf8457
gnu: Add r-fuzzyjoin.
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* gnu/pacakges/cran.scm (r-fuzzyjoin): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I47fd35ac4759c8c9cceaac32a5b78c2306404903
2024-08-26 12:24:59 +02:00
Ricardo Wurmus
b70de89f21
gnu: r-omnipathr: Update to 3.12.3.
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* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.12.3.
Change-Id: I8ecd13d0d28003bb4ceb54b2c011fe6e8162df66
2024-08-26 12:17:03 +02:00
Ricardo Wurmus
a7b2b67fbc
gnu: r-bgeedb: Update to 2.30.1.
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* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.30.1.
Change-Id: I31f54552b1e12315657f5bd9b8dbef32f3a20066
2024-08-26 12:17:03 +02:00
Ricardo Wurmus
77d37e4d9f
gnu: r-universalmotif: Update to 1.22.2.
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* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.22.2.
Change-Id: I71e3f29a2ec4b15fb6758b4b972d17b5d1f502c8
2024-08-26 12:17:03 +02:00
Ricardo Wurmus
a6d670f289
gnu: r-gdsfmt: Update to 1.40.1.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.40.1.
Change-Id: Ib9f585e2e2ad6ebc883a626da2138caffc909613
2024-08-26 12:17:03 +02:00
Ricardo Wurmus
2474e1e1d7
gnu: r-xcms: Update to 4.2.3.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.3.
Change-Id: I17355573c0af40aa8b021da3e46a99a9709b411b
2024-08-26 12:17:02 +02:00
Ricardo Wurmus
0c051d6520
gnu: r-clusterprofiler: Update to 4.12.5.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.5.
Change-Id: I05468212919db2e385cd4bd604891b7deca4110f
2024-08-26 12:17:02 +02:00
Ricardo Wurmus
af299323fc
gnu: r-dose: Update to 3.30.4.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.4.
[propagated-inputs]: Remove r-hdo-db and r-yulab-utils.
Change-Id: Ia8ed1de853bd80ad4c482667c1b3547b113410ae
2024-08-26 12:17:02 +02:00
Ricardo Wurmus
bd8e53d39e
gnu: r-gosemsim: Update to 2.30.2.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.30.2.
[propagated-inputs]: Add r-dbi, r-digest, r-httr2, and r-r-utils.
Change-Id: Idb915ec70b79f7464011e94256f68e940d63764f
2024-08-26 12:17:02 +02:00
Ricardo Wurmus
66904a4109
gnu: r-ensembldb: Update to 2.28.1.
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* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.28.1.
Change-Id: I8d03eb64092c04e5a05f5371e1d3589a2efcd4f1
2024-08-26 12:17:02 +02:00
Ricardo Wurmus
018aa1323a
gnu: r-dmrcate: Update to 3.0.8.
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* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.8.
Change-Id: I62421e4df317cf33c08bdd4f65221c255d4c2dc7
2024-08-26 12:17:02 +02:00
King, Spencer
8059adada5
gnu: Add r-shinydisconnect.
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* gnu/packages/cran.scm (r-shinydisconnect): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Ibf90c8902b6e6e6c45b7bdb921f310f14ac6b803
2024-08-26 11:39:39 +02:00
Ricardo Wurmus
a7db59b3fd
committer: Avoid // in xpath.
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When using // we assume that the package definition's S-expression is a
nesting of proper lists. This is not guaranteed to be true, because a package
definition may contain alists. By using an explicit path to the field of
interest we avoid recursion through all child nodes, thus avoiding child nodes
that are more likely to contain improper lists.
* etc/committer.scm.in (change-commit-message): Replace // with a path for the
PACKAGE symbol.
Change-Id: Idefaec9f5c3538484432e15a5865a68fc16e7369
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
a2e10e2878
gnu: r-desctools: Update to 0.99.56.
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* gnu/packages/statistics.scm (r-desctools): Update to 0.99.56.
Change-Id: I00956252d699c06408818cced7c0d04e409c61c7
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
5af4d1537b
gnu: r-fdrtool: Update to 1.2.18.
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* gnu/packages/statistics.scm (r-fdrtool): Update to 1.2.18.
Change-Id: I199c8f82b86c1b8cc40f5dffd6c55f1ff4b727e0
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
304c1f8a93
gnu: r-rcppeigen: Update to 0.3.4.0.2.
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* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.4.0.2.
Change-Id: I3f9ddfdeb14da7bd42bd6e46389da2ec11dc9940
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
ef2e52a922
gnu: r-minqa: Update to 1.2.8.
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* gnu/packages/statistics.scm (r-minqa): Update to 1.2.8.
Change-Id: Ibdf083085acf888be22d807ea77f2b4caf28de44
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
701ef945df
gnu: r-robust: Update to 0.7-5.
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* gnu/packages/statistics.scm (r-robust): Update to 0.7-5.
Change-Id: I14ceb59373e95295b2bb90712258571226f76205
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
803f295249
gnu: r-rrcov: Update to 1.7-6.
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* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-6.
Change-Id: I21b0a480e840999d554dfce503a1e2e9137ea455
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
5efce1833e
gnu: r-pcapp: Update to 2.0-5.
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* gnu/packages/statistics.scm (r-pcapp): Update to 2.0-5.
Change-Id: I4b4ee28b6777e41fc200e8bad748444b7a34f0e8
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
5faeac1abb
gnu: r-robustbase: Update to 0.99-4.
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* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-4.
Change-Id: I98104ac5700de8e50fcd8dcbcf0745845c809a9e
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
0c41f19ef6
gnu: r-fastica: Update to 1.2-5.1.
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* gnu/packages/statistics.scm (r-fastica): Update to 1.2-5.1.
Change-Id: I379e9cb4f704e4c8187152762d65f034fd42bf5a
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
4c60a9d5c2
gnu: r-rann: Update to 2.6.2.
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* gnu/packages/statistics.scm (r-rann): Update to 2.6.2.
Change-Id: I4be5c6a4f63f5bd572d8b35637ee68c65c89a428
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
09a6994e38
gnu: r-sfsmisc: Update to 1.1-19.
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* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-19.
Change-Id: Ie8c3682f4b0bf2cc98de7753b0cbed82f6303b48
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
01e18de27d
gnu: r-mvtnorm: Update to 1.2-6.
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* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-6.
Change-Id: I49def37b078afadc47aaba571fd6ee6a2399f09c
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
bc99d00db3
gnu: r-rmarkdown: Update to 2.28.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.28.
Change-Id: Id76c14ee9db4e49ecafe5fe0f5e45c0212ad1333
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
1f312e5275
gnu: r-digest: Update to 0.6.37.
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* gnu/packages/statistics.scm (r-digest): Update to 0.6.37.
Change-Id: I9445786cc703d704c36cf6c56d06cb53f23505cc
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
0449398eb6
gnu: r-paws-common: Update to 0.7.5.
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* gnu/packages/cran.scm (r-paws-common): Update to 0.7.5.
Change-Id: I074d17393bd5ec5bf4ecd860ac0ab0f08bfada04
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
3e22e504d2
gnu: r-opencpu: Update to 2.2.13.
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* gnu/packages/cran.scm (r-opencpu): Update to 2.2.13.
Change-Id: Ia783a7a278852a5bc0136f015624b1c0283a3ac3
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
e07bd70350
gnu: r-webutils: Update to 1.2.1.
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* gnu/packages/cran.scm (r-webutils): Update to 1.2.1.
Change-Id: I680a8ecb149289581ef3cf53fab575b5036191b2
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
d8d3141b9b
gnu: r-intervals: Update to 0.15.5.
...
* gnu/packages/cran.scm (r-intervals): Update to 0.15.5.
Change-Id: I587ce6595d3d06177a05f7c719996a6977e09aed
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
44dc561376
gnu: r-maldiquant: Update to 1.22.3.
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* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.3.
Change-Id: I4a08996f8df6d0c746636cfbdbe9fcbaf234749d
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
99897a70e3
gnu: r-qtl: Update to 1.70.
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* gnu/packages/cran.scm (r-qtl): Update to 1.70.
Change-Id: Ic181aaa70c5396e3057ef838a235d36ed19bc31e
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
fddaaba285
gnu: r-hunspell: Update to 3.0.4.
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* gnu/packages/cran.scm (r-hunspell): Update to 3.0.4.
Change-Id: Id818aece69eae53bc83b1a14a881a028bb4b5951
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
230df70376
gnu: r-flexsurv: Update to 2.3.2.
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* gnu/packages/cran.scm (r-flexsurv): Update to 2.3.2.
Change-Id: Ia38e29f6fbdafa6e0834bc9d46f7a99e0491c65d
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
1aa52a00ff
gnu: r-spatstat-utils: Update to 3.1-0.
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* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.1-0.
Change-Id: I2a363b32aee2fa9fc21af493ce6758144833f8bd
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
133ec75cd3
gnu: r-spatstat-explore: Update to 3.3-2.
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* gnu/packages/cran.scm (r-spatstat-explore): Update to 3.3-2.
Change-Id: Ied82693302bf66b32e24becc71521a4886408118
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
0f925a2c71
gnu: r-bdgraph: Update to 2.73.
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* gnu/packages/cran.scm (r-bdgraph): Update to 2.73.
Change-Id: I79671b10863b7f24953a7cd410f237297c623f7f
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
975fde0174
gnu: r-openmx: Update to 2.21.12.
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* gnu/packages/cran.scm (r-openmx): Update to 2.21.12.
Change-Id: I7aee12e733193f4b63fce6149c055dd308a5d920
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
99cc35df8b
gnu: r-poibin: Update to 1.6.
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* gnu/packages/cran.scm (r-poibin): Update to 1.6.
Change-Id: I697841e0d5baf8ef175316f32261438547186467
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
f716ce267a
gnu: r-caretensemble: Update to 4.0.0.
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* gnu/packages/cran.scm (r-caretensemble): Update to 4.0.0.
[propagated-inputs]: Remove r-digest, r-gridextra, and r-plyr; add r-patchwork and r-rlang.
Change-Id: I3eccdbc246084030d767451996d9ef70276247e8
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
69efbb87ed
gnu: r-yulab-utils: Update to 0.1.6.
...
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.6.
[propagated-inputs]: Remove r-memoise; add r-httr2.
Change-Id: Id3b1958a6eddd3ea2dbc6f5f3e844388220b06d5
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
722dbab7ba
gnu: r-rms: Update to 6.8-2.
...
* gnu/packages/cran.scm (r-rms): Update to 6.8-2.
Change-Id: I75e83272049235815680e32cc0a05efccd1b417f
2024-08-26 11:39:38 +02:00
Ricardo Wurmus
f5986798fb
gnu: r-gmp: Update to 0.7-5.
...
* gnu/packages/cran.scm (r-gmp): Update to 0.7-5.
Change-Id: I874e46d94cfb9ec9c0d9a12a17dd70e488a91b2b
2024-08-26 11:39:38 +02:00
