futurile/guix-play
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
128,865 Commits 3 Branches 0 Tags 412 MiB
25b83bd9e4
Commit Graph

117713 Commits

Author SHA1 Message Date
Liliana Marie Prikler
f410d49eb2
Merge branch 'wip-webkit' 2023-12-18 09:29:48 +01:00
Efraim Flashner
59f60f56ba
gnu: Register new files. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Register gnu/packages/elixir-xyz.scm.
* Makefile.am (MODULES): Register guix/build-system/mix.scm,
guix/build/mix-build-system.scm.

Change-Id: I69c8fbaa6b16d658d5f6a43d1d39d680dd28ffe9
 2023-12-18 08:20:18 +02:00
Efraim Flashner
39009a8b30
gnu: go-1.14: Mark i586-gnu as unsupported. 
* gnu/packages/golang.scm (go-1.14)[supported-systems]: Mark i586-gnu as
unsupported.

Change-Id: I226676e78e37047cf78ad185355dc4bff64e9d04
 2023-12-18 08:14:16 +02:00
Efraim Flashner
6e6ccef212
gnu: ci: Build tuned packages for common baselines. 
* gnu/ci.scm (%x86-64-micro-architectures): Update the list of
micro-architectures to also match the psABI levels.

Change-Id: Iee2f65376a00ad2ee5fb393c2e64c07f866d8116
 2023-12-18 08:14:16 +02:00
Efraim Flashner
502bb9681b
gnu: Remove newsboat-2.13. 
* gnu/packages/syndication.scm (newsboat-2.13): Delete variable.

Change-Id: I4453693485a45aee9ba93657624a6e7518808dc8
 2023-12-18 08:14:16 +02:00
Liliana Marie Prikler
256d5b3598
Merge branch 'master' into wip-webkit 2023-12-18 03:58:23 +01:00
antlers
1a9f267f51
gnu: emacs-embark: Update to 1.0 
* gnu/packages/emacs-xyx.scm (emacs-embark): Update to 1.0

Change-Id: I230bac996df9883a20c9f70e0b27f5bed37c91fa
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
9002b04e13
gnu: Add elixir-machete. 
* gnu/packages/elixir-xyz.scm (elixir-machete): New variable.

Change-Id: I76e0fd78aeeaeaa94a297032b3b309846510c975
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
32de15206d
gnu: Add elixir-dialyxir. 
* gnu/packages/elixir-xyz.scm (elixir-dialyxir): New variable.

Change-Id: I387062e0aaaded448022aa7534b95859b5979a06
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
43a74143ea
gnu: Add elixir-erlex. 
* gnu/packages/elixir-xyz.scm (elixir-erlex): New variable.

Change-Id: Ia518ad5fd32d3f5942b20113e61e4ef7e7895ff3
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
d3410fb284
gnu: Add elixir-credo. 
* gnu/packages/elixir-xyz.scm (elixir-credo): New variable.

Change-Id: I6df0d926e0fb96caa65d081892026b3495431c83
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
2060e3f5c8
gnu: Add elixir-excoveralls. 
* gnu/packages/elixir-xyz.scm (elixir-excoveralls): New variable.

Change-Id: Ib271d8a7393e21178806df28ab892afe99757297
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
ab74b47e92
gnu: Add elixir-castore. 
* gnu/packages/elixir-xyz.scm (elixir-castore): New variable.

Change-Id: Iea1fea8241d19ff35a183af9c3fbf2ed5198a259
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
20312bdf5b
gnu: Add elixir-inch-ex. 
* gnu/packages/elixir-xyz.scm (elixir-inch-ex): New variable.

Change-Id: I6e98424528a0264a2587d28fcf065fa74eff0f1a
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
87e3f0b9b5
gnu: Add elixir-bunt. 
* gnu/packages/elixir-xyz.scm (elixir-bunt): New variable.

Change-Id: Ib84797c31d6ab40d59b87b040993dae9391ead6b
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
e490763f27
gnu: Add elixir-file-system. 
* gnu/packages/elixir-xyz.scm (elixir-file-system): New variable.

Change-Id: I54e9c9069ddf150bb0c882775b0b2c9d5e59abd6
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
4ee644f918
gnu: Add elixir-jason. 
* gnu/packages/elixir-xyz.scm (elixir-jason): New variable.

Change-Id: Iadd816e2b5db6d146728aacb4d6b2c66aba4304c
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
be31d3f32f
gnu: Add elixir-makeup. 
* gnu/packages/elixir-xyz.scm (elixir-makeup): New variable.

Change-Id: I21fe9ffddb4c95a2c67b74340b1105c2a54d3c82
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
303b9bd163
gnu: Add elixir-nimble-parsec. 
* gnu/packages/elixir-xyz.scm (elixir-nimble-parsec): New variable.

Change-Id: I79bab8095aee3212bc295354ead55df49ef92d17
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:31 +01:00
Pierre-Henry Fröhring
612f8afac1
gnu: Add elixir-hex. 
* gnu/packages/elixir.scm (elixir-hex): New variable.

Change-Id: I957688ae4e078afd79acd439880c38083fdab83a
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:30 +01:00
Pierre-Henry Fröhring
c2ed5a7d13
gnu: elixir: Wrap binaries. 
* gnu/packages/elixir.scm (elixir)[#:phases]: Add ‘wrap-programs’.
[native-search-path]: Add “GUIX_ELIXIR_LIBS”.

Change-Id: I75bdde3aeedc1d495ea5fc2c5fc3fcdc5dc3fad2
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-12-17 22:22:30 +01:00
Liliana Marie Prikler
7b826d5734
gnu: python-renpy: Update to 8.1.3. 
* gnu/packages/game-development.scm (python-renpy): Update to 8.1.3.

Change-Id: I5e265cdc0f83eda9ae19a3627fa8cd69ef103806
 2023-12-17 22:22:30 +01:00
Liliana Marie Prikler
0cfaf5654a
gnu: python-pygame-sdl2: Update to 2.1.0+renpy8.1.3. 
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0+renpy8.1.3.

Change-Id: Ide0baef4762b2c4174d10e07ec94427916ac41af
 2023-12-17 22:22:30 +01:00
Andrew Tropin
6ab242609d
gnu: guile-ares-rs: Update to 0.9.1. 
* gnu/packages/guile-xyz.scm (guile-ares-rs): Update to 0.9.1.
 2023-12-17 10:25:08 +03:00
Leo Famulari
fe86819d8b
gnu: linux-libre 4.14: Update to 4.14.333. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.333.
(linux-libre-4.14-pristine-source): Update hash.

Change-Id: I32f32f1ccb922f845d28dc84d2389bdf6636f839
 2023-12-16 15:59:39 -05:00
Leo Famulari
15af10f69c
gnu: linux-libre 4.19: Update to 4.19.302. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.302.
(linux-libre-4.19-pristine-source): Update hash.

Change-Id: Ic8f6e5311ab9fc4c9adeb4f006fd9b2d7b501359
 2023-12-16 15:59:39 -05:00
Leo Famulari
fd109a7dbb
gnu: linux-libre 5.4: Update to 5.4.264. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.264.
(linux-libre-5.4-pristine-source): Update hash.

Change-Id: Id263ea3c098e61b25794e403a4722824b37539f1
 2023-12-16 15:59:39 -05:00
Leo Famulari
900e491fdb
gnu: linux-libre 5.10: Update to 5.10.204. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.204.
(linux-libre-5.10-pristine-source): Update hash.

Change-Id: Ibaeb98f2ea80724e95a40f6bb0478dec5b6ca3dc
 2023-12-16 15:59:39 -05:00
Leo Famulari
ea550e71f3
gnu: linux-libre 5.15: Update to 5.15.143. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.143.
(linux-libre-5.15-pristine-source): Update hash.

Change-Id: I7854728eb1cc38afa2fb1d8cfbd9463cf10ee8d8
 2023-12-16 15:59:38 -05:00
Leo Famulari
833931c96d
gnu: linux-libre 6.1: Update to 6.1.68. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.68.
(linux-libre-6.1-pristine-source): Update hash.

Change-Id: I23cb34828bc0f31333ea737e566ee68967ed965e
 2023-12-16 15:59:38 -05:00
Leo Famulari
6467384d2a
gnu: linux-libre: Update to 6.6.7. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.7.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: I72ffbc67e66f9e4330b87bb189b2a5d29abcdf0b
 2023-12-16 15:59:38 -05:00
Leo Famulari
f061bc5ba3
gnu: python-msgpack-transitional: Update code comment. 
* gnu/packages/python-xyz.scm (python-msgpack-transitional): Update comment.

Change-Id: I93afe78c40ac87c6e5147d286cf257ec9a8afd68
 2023-12-16 15:26:26 -05:00
Leo Famulari
efb4620d7c
gnu: Remove python-msgpack-1.0.2. 
This package is no longer used in Guix.

* gnu/packages/python-xyz.scm (python-msgpack-1.0.2): Remove variable.

Change-Id: I6216003e6312c5587ae3471ba9870865ee68f680
 2023-12-16 15:26:26 -05:00
Leo Famulari
61138a18d5
gnu: Borg: Update to 1.2.7. 
* gnu/packages/backup.scm (borg): Update to 1.2.7.
[inputs]: Replace python-msgpack-1.0.2 with python-msgpack.

Change-Id: I8529d737d90105f877f1c099f4b3afa9b0ed9fa8
 2023-12-16 15:26:22 -05:00
Efraim Flashner
ed9d47c6ae
gnu: fpc: Add support for aarch64-linux. 
* gnu/packages/pascal.scm (fpc-bootstrap-aarch64): New variable.
(fpc)[arguments]: Add cases for aarch64-linux.
[native-inputs]: Add case for fpc-binary for aarch64-linux.

Change-Id: I03630f9b36c10636db23c00aaf8f72b9ddf2390d
 2023-12-16 18:05:58 +02:00
Efraim Flashner
617e3dd2ae
gnu: fpc: Add support for powerpc64le-linux. 
* gnu/packages/pascal.scm (fpc-bootstrap-powerpc64le): New variable.
(fpc)[arguments]: Add cases for powerpc64le-linux.
[native-inputs]: Add case for fpc-binary for powerpc64le-linux.

Change-Id: I4f12003b35ef60764e7e25cc14aed7d243c6fe0f
 2023-12-16 18:05:58 +02:00
Efraim Flashner
2b501ed730
gnu: fpc: Add support for powerpc-linux. 
* gnu/packages/pascal.scm (fpc-bootstrap-powerpc): New variable.
(fpc)[arguments]: Add cases for powerpc-linux.
[native-inputs]: Add case for fpc-binary for powerpc-linux.

Change-Id: I0d4d9dda9d4c8f70ff20031ab94f1dc439df88e2
 2023-12-16 18:05:58 +02:00
Efraim Flashner
1954a1e33d
gnu: fpc: Patch more dynamic-linker paths. 
* gnu/packages/pascal.scm (fpc)[arguments]: Patch more paths to the
dynamic-linker in the 'configure phase.

Change-Id: I0eebf1271d24e22839db0a8fd96385408067fdbf
 2023-12-16 18:05:57 +02:00
Efraim Flashner
7b949bc318
gnu: fpc: Fix building on i686-linux. 
* gnu/packages/pascal.scm (fpc)[source]: Add patch.
* gnu/packages/patches/fpc-glibc-2.34-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I6fde62de63171d7e16754b36db460f4073b1979d
 2023-12-16 18:05:57 +02:00
Efraim Flashner
e9e08b02b5
gnu: valgrind: Mark as unsupported on i586-gnu. 
* gnu/packages/valgrind.scm (valgrind)[supported-systems]: Remove
i586-gnu from supported systems.

Change-Id: I260b9b343c30da81d0420c92431d56d22c260cc4
 2023-12-16 18:05:57 +02:00
Efraim Flashner
580a7cc5a9
gnu: valgrind: Use correct glibc. 
* gnu/packages/valgrind.scm (valgrind/interactive)[inputs]: Replace
glibc with libc-for-target.

Change-Id: If8e428a12647c8aeb36fa90f36d7c8d12055f2b9
 2023-12-16 18:05:54 +02:00
Ricardo Wurmus
d5298c5e33
gnu: r-with-tests: Update to 4.3.2. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.2.

Change-Id: Ifd949eb363582e533d629e573ea98c10edf127c3
 2023-12-16 13:06:15 +01:00
Liliana Marie Prikler
9f6210cc5c
gnu: yelp: Build with webkitgtk-for-gtk3. 
This replacement was omitted in f3da903b01:
Yelp 42 still builds with GTK+ 3, so let's use the right Webkit.

* gnu/packages/gnome.scm (yelp)[inputs]: Replace webkitgtk with
webkitgtk-for-gtk3.
 2023-12-16 02:11:07 +01:00
Liliana Marie Prikler
822befbcae
gnu: epiphany: Build with webkitgtk-for-gtk3. 
This replacement was omitted in f3da903b01:
Epiphany 42 still builds with GTK+ 3, so let's use the right Webkit.

* gnu/packages/gnome.scm (epiphany)[inputs]: Replace webkitgtk with
webkitgtk-for-gtk3.
 2023-12-12 22:07:08 +01:00
Tobias Geerinckx-Rice
38035705ed
gnu: inxi-minimal: Update to 3.3.31-2. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.31-2.

Change-Id: I6645cdc0870396ef6726bed1e24af534a4e03503
 2023-12-10 01:00:00 +01:00
Tobias Geerinckx-Rice
a4bbe113ff
gnu: mediainfo: Update to 23.11. 
* gnu/packages/video.scm (mediainfo): Update to 23.11.

Change-Id: Ife3dad58749d292c04d6b5cca8fb0eabf3a7a02a
 2023-12-10 01:00:00 +01:00
Tobias Geerinckx-Rice
ec7d33c108
gnu: libmediainfo: Update to 23.11. 
* gnu/packages/video.scm (libmediainfo): Update to 23.11.

Change-Id: Id7967fb5ed1304055ddeea73b550bd9c5e7ec6ec
 2023-12-10 01:00:00 +01:00
Tobias Geerinckx-Rice
7a7b7c176f
gnu: iperf: Update to 3.16. 
* gnu/packages/networking.scm (iperf): Update to 3.16.

Change-Id: I8463174ba4a0773ef62d3e888332a223cefad56e
 2023-12-10 01:00:00 +01:00
Ricardo Wurmus
92f179ab20
gnu: r-tximeta: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.1.

Change-Id: Id29bdc8c00f957854ed5ba38c2cbbb91e04bbf78
 2023-12-15 17:47:43 +01:00
Ricardo Wurmus
e19a7ca446
gnu: r-biomvrcns: Update to 1.42.2. 
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.42.2.

Change-Id: I956718d0ecb503546564434fbea82a886d4de9f4
 2023-12-15 17:47:43 +01:00
Ricardo Wurmus
5765ddc666
gnu: r-basilisk: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.1.

Change-Id: I7c05a536a58ca7bc7d24fdb5f39a420611bebf45
 2023-12-15 17:47:42 +01:00
Ricardo Wurmus
32cd9f9993
gnu: r-basilisk-utils: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.1.

Change-Id: Icda5e71c0a709e2de4c6303774c37224a9476d62
 2023-12-15 17:47:42 +01:00
Ricardo Wurmus
1b5ffaa960
gnu: r-gviz: Update to 1.46.1. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.1.

Change-Id: I10e68ee45be2cd2cddc217e75ee6667323c4dd57
 2023-12-15 17:47:42 +01:00
Ricardo Wurmus
280162165b
gnu: r-mscoreutils: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.1.

Change-Id: Ia978e23f1f0bf5a58ffa2c76a65c5f9982629aac
 2023-12-15 17:47:42 +01:00
Ricardo Wurmus
2f14829a7c
gnu: r-sparsearray: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.2.

Change-Id: I96f367bf5c39c973e1c5fad3b9620bfcaf88417a
 2023-12-15 17:47:41 +01:00
Ricardo Wurmus
aa3e41026a
gnu: r-scater: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.30.1.

Change-Id: I5e497b654bc4a26adc6d956f728f31ae631a239c
 2023-12-15 17:47:41 +01:00
Ricardo Wurmus
2fb96bed75
gnu: r-s4vectors: Update to 0.40.2. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.40.2.

Change-Id: I6201d17fa2a6be618feb26ad632b9249f87d86c5
 2023-12-15 17:47:41 +01:00
Ricardo Wurmus
ccf2d49837
gnu: r-ucell: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.2.

Change-Id: Ie08960a237ad1515332794b23c2bd31e94299dfe
 2023-12-15 17:47:41 +01:00
Ricardo Wurmus
be56597c9d
gnu: r-variancepartition: Update to 1.32.2. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.2.
[propagated-inputs]: Add r-matrixstats.

Change-Id: I436a1db36ad910aec0fac87150c62735f6509575
 2023-12-15 17:47:41 +01:00
Ricardo Wurmus
bb64a047b4
gnu: r-flowworkspace: Update to 4.14.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.1.

Change-Id: I2e950e77842add2eebeeffac2492ba0ef1aa6422
 2023-12-15 17:47:40 +01:00
Ricardo Wurmus
2ab52103c9
gnu: r-xcms: Update to 4.0.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.1.

Change-Id: I98dd730bb959d2483164177a3e534915d13fee44
 2023-12-15 17:47:40 +01:00
Ricardo Wurmus
e22fc284e3
gnu: r-genomicscores: Update to 2.14.2. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.2.

Change-Id: I00417ef0c2f9657ec39690baa52a1cd075fb69c6
 2023-12-15 17:47:40 +01:00
Ricardo Wurmus
0d5917604c
gnu: r-dose: Update to 3.28.2. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.2.
[propagated-inputs]: Remove r-hpo-db and r-mpo-db; add r-yulab-utils.

Change-Id: Ia29d318cac9b1e261fb89fc4d15f8b40ec3583f3
 2023-12-15 17:47:40 +01:00
Ricardo Wurmus
cff731dae5
gnu: r-lefser: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.12.1.

Change-Id: Iac94395b267e925116929d48abb3c28cff31504e
 2023-12-15 17:47:39 +01:00
Ricardo Wurmus
fcdd57e5fe
gnu: r-zellkonverter: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.12.1.

Change-Id: I0db7450b3eff32e739ea3b806dde96114caba440
 2023-12-15 17:47:39 +01:00
Ricardo Wurmus
01f345225b
gnu: r-variantannotation: Update to 1.48.1. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.1.

Change-Id: I51e6a6db61fc4782823f9a7f85345742b8c7ab72
 2023-12-15 17:47:39 +01:00
Ricardo Wurmus
69126c2b9c
gnu: r-trackviewer: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.1.

Change-Id: I3ec74e7c37830e7a0b3b12311e304cc2e4fe322e
 2023-12-15 17:47:39 +01:00
Ricardo Wurmus
5a231ed554
gnu: r-tcgautils: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.2.

Change-Id: I9c33a55076c672fa3a6ff6c97675dee16d186a39
 2023-12-15 17:47:38 +01:00
Ricardo Wurmus
27fab6cfee
gnu: r-rhdf5filters: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.1.

Change-Id: I260973b51c3a8e895339d1c4b6fbed8f66ccb50c
 2023-12-15 17:47:38 +01:00
Ricardo Wurmus
be49fe22cd
gnu: r-rhdf5: Update to 2.46.1. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.1.

Change-Id: Ia4781476ab82dd867a707e98767d8ee12d208003
 2023-12-15 17:47:38 +01:00
Ricardo Wurmus
0f499ab3b0
gnu: r-msnbase: Update to 2.28.1. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.1.

Change-Id: I25fdd2662ab60939732cdee51fc2b53916f1d705
 2023-12-15 17:47:38 +01:00
Ricardo Wurmus
5883f6d17f
gnu: r-genomeinfodb: Update to 1.38.2. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.2.

Change-Id: I17852db375cc7e833d100998c89751e68f3d4362
 2023-12-15 17:47:38 +01:00
Ricardo Wurmus
73e20717d0
gnu: r-edger: Update to 4.0.3. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.3.

Change-Id: I97d73da131092effbf2404e710389d863ba39889
 2023-12-15 17:47:37 +01:00
Ricardo Wurmus
97d988cd23
gnu: r-champ: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-champ): Update to 2.32.0.

Change-Id: I2058a0c0b086452ccfae5ef84884aa0b9cf51abb
 2023-12-15 17:47:37 +01:00
Ricardo Wurmus
b77fe732f0
gnu: r-annotationdbi: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.64.1.

Change-Id: If7f6bef70b3f4cc59c81ea68632b36c4b8449a73
 2023-12-15 17:47:37 +01:00
Ricardo Wurmus
96af9a059b
gnu: r-infercnv: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.18.1.

Change-Id: I99b0f17246ef267a58f87c1719066b1b4f198d8b
 2023-12-15 17:47:37 +01:00
Ricardo Wurmus
da79581a8f
gnu: r-dmrcate: Update to 2.16.1. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.16.1.
[propagated-inputs]: Remove r-dss.

Change-Id: I183971826201b19cc88eb2768716aa2e165aba1f
 2023-12-15 17:47:36 +01:00
Ricardo Wurmus
ae4c47571e
gnu: r-degreport: Update to 1.38.5. 
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.38.5.
[propagated-inputs]: Add r-dendextend and r-stringi.

Change-Id: I73fe47489449b46406b879dba0318d02dc3c7614
 2023-12-15 17:47:36 +01:00
Ricardo Wurmus
3dc5ddb82a
gnu: r-cellid: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.10.1.

Change-Id: I74f0e39907eb293f84a2ee9d29ef5feab15b698a
 2023-12-15 17:47:36 +01:00
Ricardo Wurmus
f5f19ac400
gnu: r-biocversion: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.18.1.

Change-Id: I844d321dc3716d2658ddd75a81d844f8b302af53
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus
71c0e7eea6
gnu: r-bandits: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.18.1.

Change-Id: Ied13d156cb7762fd6f86a5a0cccff302b684530d
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus
ea9441de8f
gnu: r-aseb: Update to 1.46.3. 
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.46.3.

Change-Id: I7fb905224840f598261fceba67207cd71e7a73d9
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus
2dc2636444
gnu: r-anvil: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.1.

Change-Id: I2ea83e4a11a1268f222201480563fe1c9ce1060b
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus
dafbf36e1f
gnu: r-agimicrorna: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.52.0.

Change-Id: I0f739590d115b5dc354833cdac2ba3c400ddd995
 2023-12-15 17:47:35 +01:00
Ricardo Wurmus
8341726732
gnu: r-rhdf5lib: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.1.
[propagated-inputs]: Add r-biocstyle and r-stringr.
[native-inputs]: Add r-rmarkdown.

Change-Id: I18c06543abee8e4a715f1ef120ce600562804225
 2023-12-15 17:27:44 +01:00
Ricardo Wurmus
c5f2535346
gnu: r-reportingtools: Update to 2.42.3. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.42.3.
[source]: Adjust snippet.
[arguments]: Use minify-build-system in 'process-javascript phase.
[native-inputs]: Remove r-knitr; add r-rmarkdown.

Change-Id: I1c00e1a1d8095f40da29b57b8e82de493fcff26e
 2023-12-15 17:25:58 +01:00
Ricardo Wurmus
9013d47d5e
gnu: r-affycoretools: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.74.0.

Change-Id: I4197d73e62477bb64182181229c8a33f3048406a
 2023-12-15 16:52:00 +01:00
Ricardo Wurmus
93597fc39c
gnu: pyscenic: Update to 0.11.2-1.5f170fd. 
* gnu/packages/bioinformatics.scm (pyscenic): Update to 0.11.2-1.5f170fd.
[build-system]: Use pyproject-build-system.
[arguments]: Patch setup.py.
[propagated-inputs]: Add python-pyarrow.

Change-Id: I3acd7c921c2c44741c0afd0bbda011f63ed14c42
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
46b1e717cf
gnu: python-ctxcore: Update to 0.2.0. 
* gnu/packages/bioinformatics.scm (python-ctxcore): Update to 0.2.0.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Replace python-pyarrow-0.16 with python-pyarrow.

Change-Id: I3f72f9872b438c0a624d23becb5d7828f1986da7
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
b2aa1d7cd0
gnu: r-readwriter: Update to 1.5.3-1.91373c4. 
* gnu/packages/bioinformatics.scm (r-readwriter): Update to 1.5.3-1.91373c4.
[propagated-inputs]: Remove r-gdata.

Change-Id: Ice16d3b07d7446ca864fd30e46110c9060b83081
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
07f85bb057
gnu: r-stringendo: Update to 0.6.0. 
* gnu/packages/bioinformatics.scm (r-stringendo): Update to 0.6.0.
[propagated-inputs]: Remove r-devtools and r-usethis; add r-clipr.

Change-Id: Iff4a841beb51558ba7d5d8e87ee56e7c3f2b2710
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
4d92caef51
gnu: r-liana: Add missing inputs. 
* gnu/packages/bioinformatics.scm (r-liana)[propagated-inputs]: Add r-basilisk
and r-basilisk-utils.

Change-Id: I5dce058a446245e6797cca1c35485f38b3da819a
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
0ec25720ab
gnu: python-vaex-core: Add missing input. 
* gnu/packages/python-science.scm (python-vaex-core)[propagated-inputs]: Add
python-click.

Change-Id: Id91e925832ed107d5b346ba513a9825dc31481f6
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
07acdb1552
gnu: r-desctools: Update to 0.99.52. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.52.
[propagated-inputs]: Remove r-bh; add r-cli.

Change-Id: Idca54e4796494b1d5635412c8f15bf639383ee0a
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
3e17f2ff9c
gnu: r-bayesfactor: Update to 0.9.12-4.6. 
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.6.

Change-Id: Iac17532bb38081a536790af3c5a36ad4791905b9
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
53082f702d
gnu: r-cairo: Update to 1.6-2. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.6-2.

Change-Id: I519f1bef619873d81c38b272251075b4c8c88c68
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
040c86f2c8
gnu: r-tclust: Update to 1.5-5. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.5-5.

Change-Id: I8526d099efd09fc458deb4feb090eb83671549ea
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
541d828f97
gnu: r-robust: Update to 0.7-3. 
* gnu/packages/statistics.scm (r-robust): Update to 0.7-3.

Change-Id: Ia4908566898547b7d8d14138f776de78f8f4a9fd
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
01c7baaf43
gnu: r-pcapp: Update to 2.0-4. 
* gnu/packages/statistics.scm (r-pcapp): Update to 2.0-4.

Change-Id: Ie0ad4cd7ddf9c649294f4ba76fc3aa6422f5e81c
 2023-12-15 16:13:14 +01:00
Ricardo Wurmus
a5df4d20ee
gnu: r-robustbase: Update to 0.99-1. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-1.

Change-Id: I01fe9d9a24471eaa93439169ad197fbaf54a8446
 2023-12-15 16:13:14 +01:00