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Author SHA1 Message Date
Ricardo Wurmus
bd322e08de
gnu: r-ropls: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.32.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
74591bcb64
gnu: r-multidataset: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.28.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
addd78c953
gnu: r-birewire: Update to 3.32.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.32.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
29649ada9e
gnu: r-rqc: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.34.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
8d3676e217
gnu: r-quasr: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
b8c4548ac0
gnu: r-rhisat2: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.16.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
3a2a833691
gnu: r-sgseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.34.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
e438a5c9d9
gnu: r-rbowtie: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.40.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
c91f3192bc
gnu: r-iclusterplus: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
277f476f60
gnu: r-biocfilecache: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.8.0.
[propagated-inputs]: Remove r-rappdirs.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
2ee15aee56
gnu: r-arrmnormalization: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.40.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
8f88c0243c
gnu: r-progeny: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.22.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
0bffa9d7e7
gnu: r-rbowtie2: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.6.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
5c7824bffa
gnu: r-zfpkm: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.22.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
8f89dba276
gnu: r-zinbwave: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.22.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
f8add36afb
gnu: r-webbioc: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.72.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
58a016c5b2
gnu: r-widgettools: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.78.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
f86f2584f9
gnu: r-wiggleplotr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.24.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
a8a248b0c8
gnu: r-wrench: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.18.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
1ad2255a5b
gnu: r-wppi: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.8.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
dd19f928e7
gnu: r-xcms: Update to 3.22.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.22.0.
[propagated-inputs]: Add r-multtest.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
48ad54e1c0
gnu: r-massspecwavelet: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.66.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
88acb3def5
gnu: r-roar: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.36.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
4c26b3049a
gnu: r-yarn: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.26.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
041dbd604b
gnu: r-quantro: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.34.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
48e5c920d2
gnu: r-gcrma: Update to 2.72.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.72.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
a88af8976b
gnu: r-yapsa: Update to 1.25.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.25.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ef2b8e94bf
gnu: r-somaticsignatures: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.36.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
46158e258b
gnu: r-gtrellis: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.32.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
7cbc47eadd
gnu: r-yamss: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.26.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
6f5209f1a9
gnu: r-ebimage: Update to 4.42.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.42.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ba31e05d75
gnu: r-aucell: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.22.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
bade0db654
gnu: r-allelicimbalance: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.38.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ecc70c623f
gnu: r-annotationtools: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.74.0.
 2023-04-29 20:28:02 +02:00
Ricardo Wurmus
c901ed6127
gnu: r-gofuncr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.20.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
88362fc7ff
gnu: r-atacseqqc: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.24.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
98e54bf5ca
gnu: r-genomicscores: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.12.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
46b87ee7e7
gnu: r-bionetstat: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.20.0.
[source]: Delete minified JavaScript file.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild and r-rmarkdown.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
1d91760996
gnu: r-motifstack: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.0.
[source]: Delete minified JavaScript file.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild and sources for d3.v4.js.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
dfd9bb7b1a
gnu: r-motifbreakr: Update to 2.13.7. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.13.7.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
cee1f0ae56
gnu: r-motifdb: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.42.0.
[native-inputs]: Add r-formatr, r-markdown, and r-rmarkdown.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
4d36726a8c
gnu: r-rgadem: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d4f475a68b
gnu: r-bacon: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.28.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
17f1c0e530
gnu: r-abseqr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.18.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
6fbb674db9
gnu: r-a4: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
f9f9c3f64e
gnu: r-a4base: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
775bb851d1
gnu: r-a4reporting: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
71118c1b26
gnu: r-a4preproc: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d2e98617e8
gnu: r-a4classif: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d596e1db96
gnu: r-a4core: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
ae28601ad1
gnu: r-annaffy: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.72.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
34b3010a74
gnu: r-mlinterfaces: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.80.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
46dd98333f
gnu: r-clusterexperiment: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.20.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
e2484544a5
gnu: r-clusterprofiler: Update to 4.8.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
e878a97766
gnu: r-enrichplot: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
96575cde15
gnu: r-dose: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d85403b837
gnu: r-fgsea: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.26.0.
[propagated-inputs]: Add r-scales.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
490e8a9004
gnu: r-fcscan: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.14.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
2cbb845e7d
gnu: r-anota: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.48.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
288da213c8
gnu: r-gosemsim: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.26.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
f40f9d0bb9
gnu: r-heatplus: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.8.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
2a6a1b55a1
gnu: r-varianttools: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.42.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
419e701243
gnu: r-tradeseq: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.14.0.
 2023-04-29 20:28:01 +02:00
Ricardo Wurmus
7f77509696
gnu: r-ioniser: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
0ecfa451a0
gnu: r-linnorm: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
3ae9922530
gnu: r-lumi: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.52.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ccc6ebc63f
gnu: r-methylumi: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.46.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
596dec968e
gnu: r-minfi: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.46.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
44602f4a65
gnu: r-milor: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-milor): Update to 1.8.1.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
91758952d4
gnu: r-microbiome: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.22.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
957cc37181
gnu: r-mia: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-mia): Update to 1.8.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
8d0843d3eb
gnu: r-bumphunter: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.42.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
73b17e2b61
gnu: r-siggenes: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.74.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ea03105d25
gnu: r-illuminaio: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.42.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
98da84a5a6
gnu: r-geoquery: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.68.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
0410b30ba1
gnu: r-scone: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
74aa56e71f
gnu: r-scdd: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
2e1495c9f5
gnu: r-noiseq: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.44.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
196e329b69
gnu: r-monocle: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.28.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6a313f06bf
gnu: r-mast: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.26.0.
[propagated-inputs]: Add r-matrix.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
cffec95040
gnu: r-batchelor: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.16.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
1f44f80239
gnu: r-residualmatrix: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.10.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
c8315e500c
gnu: r-icobra: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.28.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6c7f4296b9
gnu: r-ihw: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.28.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
cb5b5722bd
gnu: r-lpsymphony: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ad80b3fa5e
gnu: r-karyoploter: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.26.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ff78701399
gnu: r-ebseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.40.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
b861c08de6
gnu: r-dnacopy: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
559ed048b6
gnu: r-chipexoqual: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.24.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
1f83062449
gnu: r-savr: Update to 1.37.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.37.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
3531182e1e
gnu: r-destiny: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.14.0.
[native-inputs]: Remove r-nbconvertr.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6fd03125bf
gnu: r-biocsingular: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.16.0.
 2023-04-29 20:28:00 +02:00
Ricardo Wurmus
959fae1d39
gnu: r-metapod: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.8.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
9886b96ef8
gnu: r-ggtree: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.8.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
ea5a5623b1
gnu: r-treesummarizedexperiment: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.8.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
0a1fbf006e
gnu: r-treeio: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.0.
[propagated-inputs]: Add r-cli.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
e176812b9f
gnu: r-scaledmatrix: Update to 1.7.1. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.7.1.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
f514cc8ad7
gnu: r-biocneighbors: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.18.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
12c8b61d67
gnu: r-ruvseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.34.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
e88fa28e21
gnu: r-dnabarcodes: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.30.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
89ee68eaf2
gnu: r-inspect: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.30.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
25b2a51612
gnu: r-plgem: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.72.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
998baf7238
gnu: r-rots: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.28.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
368dd4853e
gnu: r-glmgampoi: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.0.
[propagated-inputs]: Add r-vctrs.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
d2eda77f40
gnu: r-goseq: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.52.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
330e1d4053
gnu: r-ctc: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.74.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
f19e919ff0
gnu: r-genomicinteractions: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.34.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
c163509202
gnu: r-interactionset: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
f76db3966e
gnu: r-riboprofiling: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.30.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
116c7b6aeb
gnu: r-chipcomp: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.30.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
cbf2423878
gnu: r-qdnaseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.36.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
bed7bcd8f5
gnu: r-cghcall: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.62.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
a468586541
gnu: r-cghbase: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.60.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
3c7a962f03
gnu: r-marray: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.78.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
4285416811
gnu: r-matrixgenerics: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
1e7943fe99
gnu: r-chippeakanno: Update to 3.34.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
e3732dcda4
gnu: r-pepsnmr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.18.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
54614fc9d5
gnu: r-graph: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.78.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
c0d21bfe64
gnu: r-multtest: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.56.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
e7bc7ec54f
gnu: r-mbkmeans: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.16.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus
15daabb22f
gnu: r-diffbind: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.10.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
4985c9601e
gnu: r-greylistchip: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.32.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ef2994f256
gnu: r-apeglm: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.22.0.
[native-inputs]: Add r-rmarkdown.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
df0d0504fb
gnu: r-qvalue: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.32.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
4d031b58f1
gnu: r-quantsmooth: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.66.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
45e8cd7612
gnu: r-oligo: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
eef6764047
gnu: r-oligoclasses: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.62.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
adfdd8e86e
gnu: r-geneplotter: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.78.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
e82e8329f5
gnu: r-zellkonverter: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.10.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
61b9cc9b50
gnu: r-zlibbioc: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.46.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
d9a9bcf5c6
gnu: r-xvector: Update to 0.40.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.40.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ed59644ba0
gnu: r-xmapbridge: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.58.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
753beb909f
gnu: r-xina: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-xina): Update to 1.18.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
681a784204
gnu: r-vsn: Update to 3.68.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.68.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
7a6fa454aa
gnu: r-variantannotation: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.46.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
998c7242c2
gnu: r-tximport: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.28.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ea8a5b5d01
gnu: r-topgo: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.52.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
221c9b3914
gnu: r-systempiper: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ec18aab140
gnu: r-sva: Update to 3.48.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.48.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
77e5cffb35
gnu: r-summarizedexperiment: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
028e3d5219
gnu: r-structuralvariantannotation: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.16.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
08ca51d2e0
gnu: r-stringdb: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.12.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
b54be030aa
gnu: r-stager: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-stager): Update to 1.22.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
5698bf6fed
gnu: r-slingshot: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.8.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
15caa80904
gnu: r-scds: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-scds): Update to 1.16.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
93c0b52f6a
gnu: r-trajectoryutils: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.8.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
a48cb51ed0
gnu: r-transcriptr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.28.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
b28d21fff2
gnu: r-simplifyenrichment: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.10.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
8db5bea2ba
gnu: r-shortread: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.58.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
7c53819208
gnu: r-shinymethyl: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.0.
[propagated-inputs]: Remove r-illuminahumanmethylation450kmanifest and r-matrixstats; add
r-biobase, r-htmltools, and r-matrixgenerics.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
6264a7cca0
gnu: r-seqpattern: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.32.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus
bbdb686878
gnu: r-seqlogo: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.66.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
8e9d0d590f
gnu: r-scry: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scry): Update to 1.12.0.
[propagated-inputs]: Remove r-hdf5array.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
3cd53df25a
gnu: r-scmap: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
70433802aa
gnu: r-scdblfinder: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.14.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
22f63061e3
gnu: r-scannotatr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.6.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
2521248770
gnu: r-rtracklayer: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.60.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
04a5521933
gnu: r-rsamtools: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.16.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
c2f9c0af28
gnu: r-rhdf5filters: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.0.
[arguments]: Add phase 'use-system-libraries.
[inputs]: Add bzip2, c-blosc, and zstd:lib.
[native-inputs]: Add r-biocstyle and r-rmarkdown.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
4e9e8ed194
gnu: r-rhdf5: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.44.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
cc5dc923a6
gnu: r-regioner: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
07a18fe524
gnu: r-rcas: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
bc5d14d246
gnu: r-rbgl: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.76.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
70af2c3137
gnu: r-protgenerics: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
8e08912fcd
gnu: r-pcamethods: Update to 1.92.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.92.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
fdf3453dad
gnu: r-pcaexplorer: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
e408cd70e8
gnu: r-oscope: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.30.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
18d4032d2a
gnu: r-organismdbi: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.42.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
3c31e017e2
gnu: r-organism-dplyr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.28.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
394c951ba2
gnu: r-mzr: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
3e05ea0edb
gnu: r-mzid: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.38.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
6d09227e1f
gnu: r-msnid: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.34.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
6bbb3bedb1
gnu: r-msnbase: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
5c6355ca35
gnu: r-msa: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-msa): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
ba6ed3ff40
gnu: r-mutationalpatterns: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.10.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
37e95f3c9c
gnu: r-muscat: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.14.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
da92987a4b
gnu: r-mmuphin: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.14.0.
[propagated-inputs]: Remove r-biocstyle.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
2ebeeeb438
gnu: r-methylkit: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
15efeebe53
gnu: r-metaneighbor: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.20.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
0ee6b4203d
gnu: r-metagenomeseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.42.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
380e27f153
gnu: r-maser: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-maser): Update to 1.18.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
3c8d7bd3c6
gnu: r-manor: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-manor): Update to 1.72.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus
6e5c2c48df
gnu: r-makecdfenv: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.76.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
4d1208e654
gnu: r-made4: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-made4): Update to 1.74.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
343036f151
gnu: r-maaslin2: Update to 1.13.0. 
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.13.0.
[propagated-inputs]: Remove r-mumin and r-rmarkdown.
[arguments]: Remove.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
d1da543257
gnu: r-limma: Update to 3.56.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
b962e908a0
gnu: r-keggrest: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
2c32ed3955
gnu: r-interactivedisplaybase: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.38.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
ab9cdb4082
gnu: r-impute: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
8d8a7d55e2
gnu: r-rhtslib: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.2.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
c3882920fd
gnu: r-hpar: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.42.0.
[propagated-inputs]: Add r-experimenthub.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
fdc4c55da2
gnu: r-harshlight: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.72.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
f7a3988fc7
gnu: r-gseabase: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.62.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
57e4aab4ee
gnu: r-gostats: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.66.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
96613abcc5
gnu: r-globaltest: Update to 5.54.0. 
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.54.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
5cb6453b43
gnu: r-glad: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-glad): Update to 2.64.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
a6f4e6e7fb
gnu: r-genomicranges: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.52.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
7c75371b19
gnu: r-genomicfiles: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
25ffc3d9ef
gnu: r-genomicfeatures: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
8e72841e03
gnu: r-genomicalignments: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
d87887a2ba
gnu: r-genomeinfodb: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
dac6f08730
gnu: r-genomation: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.32.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
ff563c9a60
gnu: r-geneoverlap: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
d7a10c3d52
gnu: r-genefilter: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.0.
[propagated-inputs]: Remove r-biocgenerics; add r-matrixgenerics.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
70c3d4ac37
gnu: r-gage: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.50.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
476042884c
gnu: r-fastseg: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.46.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
3ce5803cac
gnu: r-ensembldb: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
f9b6a2ad85
gnu: r-enmix: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
cbe7726d68
gnu: r-edger: Update to 3.42.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
2a1f12e3d1
gnu: r-edaseq: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.34.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
59cecee237
gnu: r-dittoseq: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.12.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus
70784f1dcf
gnu: r-dirichletmultinomial: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.42.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
876c2dcb74
gnu: r-diffcyt: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.20.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
f327d05ecc
gnu: r-dexseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.46.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
dc78185fc7
gnu: r-deseq2: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.0.
[propagated-inputs]: Remove r-geneplotter.
[native-inputs]: Add r-rmarkdown.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
176c45cb21
gnu: r-complexheatmap: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.16.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
f86ea9868a
gnu: r-chipseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.50.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
219901a7b2
gnu: r-chipseeker: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.36.0.
[propagated-inputs]: Remove r-ggvenndiagram and r-rcolorbrewer; add r-aplot, r-tibble,
and r-yulab-utils.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
6c700d8b3a
gnu: r-champ: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-champ): Update to 2.30.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
7b4443f365
gnu: r-category: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.66.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
5d526f71c8
gnu: r-bsgenome: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.68.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
9201a7728b
gnu: r-biovizbase: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.48.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
bbd90f85b9
gnu: r-biostrings: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.68.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
c9d5ec9e66
gnu: r-biocparallel: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
d0199e0c5c
gnu: r-biomart: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
766fb8a21c
gnu: r-biobase: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.60.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
b8c4b8b44f
gnu: r-bamsignals: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.32.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
968878ef27
gnu: r-aroma-light: Update to 3.30.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.30.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
83b381a95b
gnu: r-annotationhub: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.8.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
f6c878674f
gnu: r-annotationforge: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
aa97ff9c34
gnu: r-annotationfilter: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.24.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
46ff186f73
gnu: r-annotationdbi: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
d9d1b77c84
gnu: r-annotate: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.78.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
4f2c3411ec
gnu: r-affxparser: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.72.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
1b4dd53a4f
gnu: r-affyio: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.70.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
5d8d8c2256
gnu: r-affycoretools: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.72.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
a7485d9850
gnu: r-affycontam: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.58.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
b121b78bda
gnu: r-affycomp: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
6a19dd1e21
gnu: r-affy: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
21b305edbe
gnu: r-italics: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-italics): Update to 2.60.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus
669d0d17da
gnu: r-isoformswitchanalyzer: Update to 1.21.0. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.21.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
a0846151b3
gnu: r-iranges: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
116bc67509
gnu: r-infercnv: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.16.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
09260401c4
gnu: r-ideoviz: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.36.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
e057271297
gnu: r-bluster: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.10.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
0ef0e70d81
gnu: r-dss: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-dss): Update to 2.48.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
72bfb25766
gnu: r-drimseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
c901f7c4f3
gnu: r-dmrcate: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
b23aac21d5
gnu: r-derfinderhelper: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.34.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
b7b1423882
gnu: r-delayedarray: Update to 0.25.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.25.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
c179c05e35
gnu: r-deepsnv: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.46.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
57bb01b808
gnu: r-decoupler: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.6.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
28b2d8a1e3
gnu: r-deconvr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.6.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
228c0fae2b
gnu: r-decontam: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.20.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
37a7539db3
gnu: r-deconrnaseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.42.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
8ccd86a17b
gnu: r-decomptumor2sig: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.16.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
c9794ffe59
gnu: r-decipher: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus
52e738d346
gnu: r-debcam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.18.0.
[source]: Delete bundled Java archives.
[arguments]: Add phase 'build-jar; add phase 'strip-jar-timestamps; do a fake
installation and disable tests due to a regression in R 4.3.0.
[inputs]: Replace openjdk with icedtea:jdk; add java-pj.
[native-inputs]: Add zip.
 2023-04-29 20:27:17 +02:00
Ricardo Wurmus
2bf6f659c4
gnu: Add java-pj. 
* gnu/packages/java.scm (java-pj): New variable.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
4837210129
gnu: r-dearseq: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
8f93a53a4c
gnu: r-damefinder: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
01ba2a24d2
gnu: r-dama: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-dama): Update to 1.72.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
9b305554a3
gnu: r-cummerbund: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.42.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
6233b26d1d
gnu: r-coverageview: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
f869abfae3
gnu: r-cardelino: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.2.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
084e990d2f
gnu: r-breakpointr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.18.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
cb191936d8
gnu: r-biocgenerics: Update to 0.46.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.46.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
3b302bdf35
gnu: r-biocversion: Update to 3.17.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.17.1.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
ae85652e4b
gnu: r-barcodetrackr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.8.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
41bff44b32
gnu: r-banocc: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.24.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
c6d14bd6fb
gnu: r-bandits: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
7bce4cdacb
gnu: r-bambu: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
4f4d38cc4d
gnu: r-badregionfinder: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.28.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
e10c8fe41a
gnu: r-bader: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bader): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
ff5191816e
gnu: r-basespacer: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.44.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus
bc466e59b8
gnu: r-baalchip: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.26.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
14191d89a7
gnu: r-awst: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-awst): Update to 1.8.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
d12336de7d
gnu: r-awfisher: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.14.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
ed2578b585
gnu: r-attract: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-attract): Update to 1.52.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
36aa29a62f
gnu: r-atsnp: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.16.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
9f61c365a4
gnu: r-atena: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-atena): Update to 1.6.0.
[propagated-inputs]: Remove r-scales.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
7751b88692
gnu: r-asset: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-asset): Update to 2.18.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
32b0da7762
gnu: r-assessorf: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.18.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
0968cf8f55
gnu: r-aspli: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.10.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
ba469d4674
gnu: r-asics: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-asics): Update to 2.16.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
d3ae3e616e
gnu: r-asgsca: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.34.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
e1e75eec31
gnu: r-aseb: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.44.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
4a5f8cede6
gnu: r-asafe: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.26.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
5329b80aa1
gnu: r-arrayexpress: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.60.0.
[propagated-inputs]: Remove r-xml; add r-httr, r-jsonlite, and r-rlang.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
0e88aa5b07
gnu: r-antiprofiles: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.40.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
b77e71f07c
gnu: r-annmap: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.42.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
18ad546d0a
gnu: r-anf: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-anf): Update to 1.22.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
099340458b
gnu: r-aneufinder: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.28.0.
[propagated-inputs]: Remove r-reordercluster.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
8e5e97293d
gnu: r-altcdfenvs: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.62.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
55f6d75cdb
gnu: r-alpsnmr: Update to 4.2.0. 
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.2.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
dec3658f6b
gnu: r-alpine: Update to 1.25.0. 
* gnu/packages/bioconductor.scm (r-alpine): Update to 1.25.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
19636f0341
gnu: r-alphabeta: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.14.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
76ffa191be
gnu: r-alevinqc: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.16.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
769af4fda7
gnu: r-aldex2: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.32.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus
87932885ea
gnu: r-anvil: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.12.0.
 2023-04-29 20:09:32 +02:00