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50319 Commits

Author SHA1 Message Date
Maxim Cournoyer
8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs. 
Icon themes and theme engines are best left for the users to select and
install themselves.

* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
 2020-04-27 00:54:30 -04:00
Brice Waegeneire
3b177a6c33
gnu: Add loadable module to wireguard-linux-compat. 
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-26 18:24:28 -04:00
Efraim Flashner
dc1182751c
gnu: vdirsyncer: Fix building man page. 
* gnu/packages/dav.scm (vdirsyncer)[arguments]: Add custom phase to
patch function retrieving the version string.
 2020-04-26 22:55:29 +03:00
Roel Janssen
1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description. 
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
 2020-04-26 21:47:19 +02:00
Roel Janssen
63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
 2020-04-26 21:34:49 +02:00
Maxim Cournoyer
b58a22e5b7
gnu: Add hackneyed-x11-cursors. 
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
 2020-04-26 15:32:10 -04:00
Roel Janssen
886125d791
gnu: Add r-motifbreakr. 
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
 2020-04-26 21:24:03 +02:00
Roel Janssen
3699bcf54a
gnu: Add r-motifdb. 
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
 2020-04-26 21:07:45 +02:00
Roel Janssen
ec20858a6a
gnu: Add r-pasilla. 
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
 2020-04-26 21:02:00 +02:00
Christopher Baines
f476238431
gnu: guile3.0-chickadee: Rename to guile3.0-chickadee. 
This avoids having to packages, both called guile-chickadee.

* gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from
guile-chickadee to guile3.0-chickadee.
 2020-04-26 19:44:33 +01:00
Lars-Dominik Braun
910bf1f7a1
gnu: Add tarsplitter. 
* gnu/packages/compression.scm (tarsplitter): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 21:07:43 +03:00
Ricardo Wurmus
d30d3e3f60
gnu: Add netdde. 
* gnu/packages/hurd.scm (netdde): New variable.
 2020-04-26 20:06:30 +02:00
Ricardo Wurmus
71b92e1abd
gnu: Add dde-sources. 
* gnu/packages/hurd.scm (dde-sources): New variable.
(hurd)[native-inputs]: Add it.
 2020-04-26 20:06:28 +02:00
Ricardo Wurmus
706b91ea8d
gnu: hurd: Build DDE libraries. 
* gnu/packages/hurd.scm (hurd)[native-inputs]: Add "dde-sources".
[inputs]: Add libpciaccess.
[arguments]: Add phase "prepare-dde".
 2020-04-26 20:06:17 +02:00
Jan (janneke) Nieuwenhuizen
a7dbb95ca5
gnu: guix: Update to 569c55bee2. 
* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.569c55bee2.
 2020-04-26 19:52:43 +02:00
Jan (janneke) Nieuwenhuizen
569c55bee2
gnu: guix: Cross-build fix: override compressors. 
* gnu/packages/package-management.scm (guix)[arguments]: When cross-compiling,
add `fixup-compressors' stage.
[inputs]: When cross-compiling, add `xz'.
 2020-04-26 19:52:20 +02:00
Jan (janneke) Nieuwenhuizen
56389433bc
gnu: guix: Cross-build workaround: Run native guile for version. 
We need to take some care here, the native guile is not necessarily always the
same version as the host guile.

* gnu/packages/package-management.scm (guix)[arguments]: Do not attempt to run
host guile for getting effective-version; resort to native guile.
 2020-04-26 19:46:27 +02:00
Jan (janneke) Nieuwenhuizen
d653e184ec
gnu: guix: Do not copy bootstrap-guile when cross-compiling. 
* gnu/packages/package-management.scm (guix)[arguments]: When cross-compiling,
skip copy-bootstrap-guile phase; needed for tests only.
 2020-04-26 19:46:27 +02:00
Leo Famulari
ca4b55882a
gnu: Add rav1e. 
* gnu/packages/video.scm (rav1e): New variable.
* gnu/packages/rust-apps.scm (rust-cbindgen-0.12, rust-cargo-c): New
variables.
* gnu/packages/crates-io.scm: Various new packages and upgrades.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 19:57:46 +03:00
Efraim Flashner
ee8de73814
gnu: python-scanpy: Update to 1.4.6. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
 2020-04-26 15:03:50 +03:00
Marius Bakke
f589cbc4dc
Merge branch 'master' into core-updates 2020-04-26 13:48:06 +02:00
Marius Bakke
2b829898c7
gnu: python-publicsuffix2: Adjust for Guile 3.0. 
* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
52bdd30407
gnu: nim: Adjust for Guile 3.0. 
* gnu/packages/nim.scm (nim)[arguments]: Provide explicit destination in calls
to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
05e3ed302f
gnu: tpacpi-bat: Adjust for Guile 3.0. 
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Provide explicit destination
in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
30d0f7fa8f
gnu: nmoldyn: Adjust for Guile 3.0. 
* gnu/packages/chemistry.scm (nmoldyn)[arguments]: Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
02de4b1da1
gnu: calcurse: Adjust for Guile 3.0. 
* gnu/packages/calcurse.scm (calcurse)[arguments]: Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:15 +02:00
Marius Bakke
f989dffd2c
gnu: thinkfan: Adjust for Guile 3.0. 
* gnu/packages/linux.scm (thinkfan)[arguments]: Provide explicit destination
in calls to FORMAT (destination is no longer optional with Guile 3).
 2020-04-26 13:31:15 +02:00
Eric Brown
660611e5f6
gnu: Add sylpheed. 
* gnu/packages/mail.scm (sylpheed): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:47:19 +02:00
Raghav Gururajan
0745e28d66
gnu: Add xarchiver. 
* gnu/packages/compression (xarchiver): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:25:59 +02:00
Giacomo Leidi
0bf66cbb72
gnu: Add python-osc. 
* gnu/packages/python-xyz.scm (python-osc): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:15:09 +02:00
Evan Straw
bb85018ceb
gnu: hugin: Update to 2019.2.0. 
* gnu/packages/photo.scm (hugin): Update to 2019.2.0.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:14:49 +02:00
Arun Isaac
018114baa7
gnu: maradns: Fix cross compilation. 
* gnu/packages/dns.scm (maradns)[arguments]: Build make_32bit_tables for the
host.
 2020-04-26 15:14:46 +05:30
Efraim Flashner
186f99f0f7
gnu: perl-glib: Update to 1.3292. 
* gnu/packages/glib.scm (perl-glib): Update to 1.3292.
 2020-04-26 10:22:14 +03:00
Leo Famulari
a17e5092bc
gnu: svt-av1: Update to 0.8.2. 
* gnu/packages/video.scm (svt-av1): Update to 0.8.2.
 2020-04-25 22:26:49 -04:00
Vagrant Cascadian
9b7e41f2d7
gnu: arm-trusted-firmware: Update to 2.3. 
* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.3.
  [source]: Remove hdcp patch.
* gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch: Remove patch.
* gnu/local.mk: Update accordingly.
 2020-04-25 17:08:52 -07:00
Oleg Pykhalov
396eb9e1a9
gnu: Add sbcl-stumpwm-globalwindows. 
* gnu/packages/wm.scm (sbcl-stumpwm-globalwindows): New variable.
 2020-04-26 01:59:33 +03:00
Raghav Gururajan
5cca16968e
gnu: pavucontrol: Fix icons. 
* gnu/packages/pulseaudio.scm (pavucontrol): Fix icons.
[build-system]: Use glib-or-gtk-build-system instead of gnu-build-system.
[inputs]: Add adwaita-icon-theme.  Re-order inputs.

Since the adwaita icon theme is hard-coded in the application, there is
no choice for the user anyway. So added adwaita-icon-theme to inputs and
changed build-system to glib-or-gtk to fix loading of icons.
 2020-04-25 23:01:29 +02:00
Boris A. Dekshteyn
3a5d1c9b6b
gnu: fontmanager: Update to 0.7.7. 
* gnu/packages/fontutils.scm (fontmanager): Update to 0.7.7.
 2020-04-25 22:54:11 +02:00
Holger Peters
b0ec8c675e
gnu: python-webob: Update to 1.8.3 
* gnu/packages/python-web.scm (python-webob): Update to 1.8.3.
 2020-04-25 22:38:11 +02:00
Holger Peters
82bd276d60
gnu: python-pastedeploy: Update to 2.1.0 
* gnu/packages/python-web.scm (python-pastedeploy): Update to 2.1.0.
[arguments]: Add test-target.
[native-inputs]: Replace python-nose with python-pytest and python-pytest-runner.
 2020-04-25 22:38:11 +02:00
Oskar Köök
731e92f0f8
gnu: elixir: Update to 1.10.3. 
* gnu/packages/elixir.scm (elixir): Update to 1.10.3.
 2020-04-25 22:26:48 +02:00
TomZ
813a88bb5a
gnu: flowee: Update to 2020.03.2 
* gnu/packages/finance.scm (flowee): Update to 2020.03.2
 2020-04-25 22:24:00 +02:00
Matthew Kraai
ba11dddbfe
gnu: texlive-latex-pdfx: Fix typo. 
* gnu/packages/tex.scm (texlive-latex-pdfx)[description]: Fix typo.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-25 22:23:20 +02:00
Efraim Flashner
e56ab46ba0
gnu: python-reportlib: Update to 3.5.42. 
* gnu/packages/pdf.scm (python-reportlib): Update to 3.5.42.
 2020-04-25 22:51:37 +03:00
Efraim Flashner
2d8270ad56
gnu: python-reportlib: Add missing libraries. 
* gnu/packages/pdf.scm (python-reportlib)[arguments]: Add
'use-system-libart' configure flag. Add custom phase to find libraries.
[inputs]: Add libart-lgpl, font-curve-files.
 2020-04-25 22:46:34 +03:00
Pierre Neidhardt
8cf6d150b4
gnu: Add osicat. 
* gnu/packages/lisp-xyz.scm (closicat, sbcl-osicat): New variables.
 2020-04-25 19:45:29 +02:00
Mark H Weaver
f84b036305
gnu: webkitgtk: Update to 2.28.2. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.2.
 2020-04-24 23:20:09 -04:00
Mark H Weaver
f2ce2d1274
gnu: linux-libre@5.6: Update deblob scripts. 
* gnu/packages/linux.scm (deblob-scripts-5.6): Update to 5.6.7.
 2020-04-24 19:06:13 -04:00
Pierre Langlois
c10e8cf75e
gnu: u-boot: Update to 2020.04. 
* gnu/packages/bootloaders (u-boot): Update to 2020.04.
  [native-inputs]: Replace sdl with sdl2.

Co-authored-by: Vagrant Cascadian <vagrant@debian.org>
 2020-04-24 15:59:44 -07:00
Arun Isaac
0d36d0baea
gnu: Add maradns. 
* gnu/packages/dns.scm (maradns): New variable.
 2020-04-25 03:43:08 +05:30
Marius Bakke
6ac6c1d28d
gnu: python-geventhttpclient: Disable test that fails with Python 3.8. 
* gnu/packages/python-web.scm (python-geventhttpclient)[arguments]: In the
check phase, add pytest flag to filter broken test.  While at it, don't
reorder the phase, as it now runs after install by default.
 2020-04-25 00:11:53 +02:00
Mark H Weaver
1317ff3259
gnu: linux-libre@4.14: Update to 4.14.177. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.177.
(linux-libre-4.14-pristine-source): Update hash.
 2020-04-24 18:07:54 -04:00
Mark H Weaver
0c8941b504
gnu: linux-libre@4.9: Update to 4.9.220. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.220.
(linux-libre-4.9-pristine-source): Update hash.
 2020-04-24 18:07:18 -04:00
Mark H Weaver
9c8b5d5e08
gnu: linux-libre@4.4: Update to 4.4.220. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.220.
(linux-libre-4.4-pristine-source): Update hash.
 2020-04-24 18:06:14 -04:00
Marius Bakke
9962b87780
gnu: python-aiohttp: Disable tests that fail with Python 3.8. 
* gnu/packages/python-web.scm (python-aiohttp)[arguments]: Delete failing tests.
 2020-04-24 23:24:33 +02:00
Jack Hill
45320ad808
gnu: pdfpc: Upgrade to 4.4.0 
* gnu/packages/pdf.scm (pdfpc): Upgrade to 4.4.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2020-04-24 23:24:23 +02:00
Marius Bakke
5e57967652
gnu: python-pytest-timeout: Update to 1.3.4. 
* gnu/packages/check.scm (python-pytest-timeout): Update to 1.3.4.
[arguments]: Override check phase.
[native-inputs]: Add PYTHON-PEXPECT.
 2020-04-24 23:24:23 +02:00
Raghav Gururajan
ddb0fef554
gnu: Add ktsuss. 
* gnu/packages/admin.scm (ktsuss): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-24 22:10:57 +02:00
Raghav Gururajan
bf37b49cdd
gnu: spacefm: Add dependencies for extra functionality. 
* gnu/packages/lxde.scm (spacefm): Add dependencies for extra functionality.

Adding these inputs and making required changes to build-system+arguments;
provides icons, privilege-management and disk-management.
 2020-04-24 22:03:09 +02:00
Marius Bakke
4affa9182d
gnu: font-gnu-freefont: Build with an older version of FontForge. 
Fixes <https://bugs.gnu.org/40819>.
Reported by Jack Hill <jackhill@jackhill.us>.

* gnu/packages/fontutils.scm (fontforge-20190801): New public variable.
* gnu/packages/fonts.scm (font-gnu-freefont)[native-inputs]: Change from
inherited FontForge variant to FONTFORGE-20190801.
 2020-04-24 18:19:02 +02:00
Marius Bakke
f568581c2b
gnu: emacs-guix: Add support for Guile 3.0. 
* gnu/packages/emacs-xyz.scm (emacs-guix)[source](modules, snippet): New fields.
 2020-04-24 17:43:38 +02:00
Marius Bakke
c57d649de3
Merge branch 'master' into core-updates 2020-04-24 17:28:11 +02:00
Marius Bakke
9b42918edd
gnu: guix: Update to 7dd0539. 
* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.7dd0539.
 2020-04-24 16:53:43 +02:00
Ludovic Courtès
40fd909e3d
gnu: biber: Downgrade to 2.11. 
Biber 2.12 is incompatible with biblatex 3.11, which is what's currently
packaged.  This is a followup to 41a010875b.

* gnu/packages/tex.scm (biber): Downgrade to 2.11.
 2020-04-24 16:22:02 +02:00
Ludovic Courtès
122b3cd68d
gnu: biber: Address test failures. 
* gnu/packages/patches/biber-sortinithash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (biber)[source]: Use it.
 2020-04-24 16:21:13 +02:00
Ludovic Courtès
2520059bdb
pack: 'guix pack -R' wrapper correctly reports exit code. 
Fixes <https://bugs.gnu.org/40816>.
Reported by Jan (janneke) Nieuwenhuizen <janneke@gnu.org>.

* gnu/packages/aux-files/run-in-namespace.c (main): In the 'default'
case, check 'WIFEXITED (status)' and exit with the corresponding code in
that case.  Exit with 255 in other cases.
* tests/guix-pack-relocatable.sh: Add test.
 2020-04-24 16:21:13 +02:00
Ludovic Courtès
193192ca77
gnu: llvm: Add 10.0.0. 
* gnu/packages/llvm.scm (llvm-10, clang-runtime-10, clang-10)
(clang-toolchain-10, llvm-9, clang-runtime-9, clang-9)
(clang-toolchain-9): New variables.
(llvm, clang, clang-runtime, clang-toolchain): Redefine as aliases to
the '-9' bindings.
* gnu/packages/patches/clang-10.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-04-24 16:21:13 +02:00
Naga Malleswari
4ac3461a80
gnu: Add r-rxnat. 
* gnu/packages/cran.scm (r-rxnat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:56:54 +02:00
Naga Malleswari
5b38f038f6
gnu: Add r-rcdd. 
* gnu/packages/cran.scm (r-rcdd): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:54:42 +02:00
Naga Malleswari
53269e6971
gnu: Add r-dcv. 
* gnu/packages/cran.scm (r-dcv): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:53:21 +02:00
Ricardo Wurmus
3a8ee5ef42
gnu: r-tea: Fix typo. 
* gnu/packages/cran.scm (r-tea)[description]: Fix typo.
 2020-04-24 15:51:52 +02:00
Naga Malleswari
26e5dab74a
gnu: Add r-stam. 
* gnu/packages/cran.scm (r-stam): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:51:39 +02:00
Naga Malleswari
d234006b38
gnu: Add r-grouped. 
* gnu/packages/cran.scm (r-grouped): New variable.
 2020-04-24 15:51:39 +02:00
Naga Malleswari
aa3fdca85c
gnu: Add r-sgloptim. 
* gnu/packages/cran.scm (r-sgloptim): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:51:39 +02:00
Naga Malleswari
ea43d299fa
gnu: Add r-aws. 
* gnu/packages/cran.scm (r-aws): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:51:38 +02:00
Naga Malleswari
fe14871edd
gnu: Add r-awsmethods. 
* gnu/packages/cran.scm (r-awsmethods): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:43:01 +02:00
Naga Malleswari
ba07c7f067
gnu: Add r-tea. 
* gnu/packages/cran.scm (r-tea): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:40:10 +02:00
Ricardo Wurmus
a1d369f139
gnu: Add texlive-csquotes. 
* gnu/packages/tex.scm (texlive-csquotes): New variable.
 2020-04-24 15:19:35 +02:00
Efraim Flashner
1e700c656a
gnu: datamash: Update to 1.7. 
* gnu/packages/datamash.scm (datamash): Update to 1.7.
 2020-04-24 14:52:32 +03:00
Efraim Flashner
2fea2b6414
gnu: java-eclipse-jetty-test-helper: Don't use unstable tarball. 
* gnu/packages/web.scm (java-eclipse-jetty-test-helper)[source]: Download
using git-fetch.
 2020-04-24 14:52:32 +03:00
Mark H Weaver
298c113134
gnu: linux-libre: Update to 5.4.35. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.35.
(linux-libre-5.4-pristine-source): Update hash.
 2020-04-23 19:57:00 -04:00
Mark H Weaver
3fdccd5ba6
gnu: linux-libre@5.6: Update to 5.6.7. 
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.7.
(linux-libre-5.6-pristine-source): Update hash.
 2020-04-23 19:56:13 -04:00
Mark H Weaver
887c61e67f
gnu: linux-libre@4.19: Update to 4.19.118. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.118.
(linux-libre-4.19-pristine-source): Update hash.
 2020-04-23 19:55:15 -04:00
Marius Bakke
23eb368cd3
gnu: Remove obsolete glibc-locales packages. 
* gnu/packages/base.scm (glibc-utf8-locales-2.27, glibc-locales-2.27): Remove
variables.
 2020-04-24 00:37:49 +02:00
Marius Bakke
8176ef86be
gnu: Update glibc locale compatibility packages for 2.29. 
* gnu/packages/base.scm (glibc-locales-2.28, glibc-utf8-locales-2.28): Rename
to ...
(glibc-locales-2.29, glibc-utf8-locales-2.29): ... this.  Update to 2.29.
 2020-04-24 00:37:07 +02:00
Guillaume Le Vaillant
5a91563221
gnu: Add wsjtx. 
* gnu/packages/radio.scm (wsjtx-hamlib): New variable.
  (wsjtx): New variable.
 2020-04-24 00:00:33 +02:00
Guillaume Le Vaillant
e6d141652c
gnu: fldigi: Add hamlib support. 
* gnu/packages/radio.scm (fldigi)[inputs]: Add hamlib and libusb.
 2020-04-24 00:00:33 +02:00
Guillaume Le Vaillant
409dfdf03d
gnu: Add hamlib. 
* gnu/packages/radio.scm (hamlib): New package.
 2020-04-24 00:00:33 +02:00
Alexandros Theodotou
b90b7f16ed
gnu: Add wolf-spectrum. 
* gnu/packages/music.scm (wolf-spectrum): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-23 23:59:23 +02:00
Alexandros Theodotou
59be2959a6
gnu: Add wolf-shaper. 
* gnu/packages/music.scm (wolf-shaper): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-23 23:59:23 +02:00
Marius Bakke
621caeb73b
gnu: GCC@8: Remove obsolete patch. 
This is no longer required since the update to 8.4.0 in 60ce496ad8.

* gnu/packages/patches/gcc-8-libsanitizer-mode-size.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/gcc.scm (gcc-8)[source](patches): Remove it.
 2020-04-23 19:32:24 +02:00
Leo Famulari
0f25feb159
gnu: Squid: Update to 4.11 [fixes CVE-2020-{11945,12519,12521}]. 
* gnu/packages/networking.scm (squid): Update to 4.11.
 2020-04-23 13:25:14 -04:00
Nicolas Goaziou
54b3d583af
gnu: grammalecte: Update to 1.9.0. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.9.0.
 2020-04-23 19:17:52 +02:00
Tobias Geerinckx-Rice
0fb2bc8392
gnu: liburcu: Update to 0.12.1. 
* gnu/packages/datastructures.scm (liburcu): Update to 0.12.1.
 2020-04-23 19:07:20 +02:00
Leo Famulari
8e2a423800
gnu: GNU FreeFont: Add a deprecated alias for "font-gnu-freefont-ttf". 
This is a followup to commit 5483a2d0a9.

* gnu/packages/fonts.scm (font-gnu-freefont-ttf): New variable.
 2020-04-23 12:35:43 -04:00
Marius Bakke
62c3fd34e4
gnu: shepherd: Remove obsolete patch. 
* gnu/packages/patches/shepherd-hurd.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/admin.scm (shepherd)[source](patches): Remove.
 2020-04-23 15:34:46 +02:00
Ricardo Wurmus
cf4a56d748
gnu: Add texlive-marginnote. 
* gnu/packages/tex.scm (texlive-marginnote): New variable.
 2020-04-23 15:04:12 +02:00
Marius Bakke
030f6f489f
Merge branch 'master' into core-updates 
Conflicts:
	etc/news.scm
	gnu/local.mk
	gnu/packages/bootloaders.scm
	gnu/packages/linphone.scm
	gnu/packages/linux.scm
	gnu/packages/tls.scm
	gnu/system.scm
 2020-04-23 13:33:09 +02:00
Mathieu Othacehe
938df0de73
Revert "gnu: u-boot: Update to 2020.04." 
This reverts commit be0ecfb178.
 2020-04-23 13:03:35 +02:00
Nicolas Goaziou
4eff273542
gnu: emacs-4clojure: Fix license. 
* gnu/packages/emacs-xyz.scm (emacs-4clojure)[license]: Use GPL3+.
 2020-04-23 10:32:06 +02:00
Jan (janneke) Nieuwenhuizen
95c14929a7
gnu: texinfo: Cross-build fix. 
* gnu/packages/texinfo.scm (texinfo)[inputs]: Add perl.  This makes the host
texi2any (makeinfo) refer to the correct perl.  To avoid triggering a rebuild,
do this while cross-compiling only.
 2020-04-23 07:32:57 +02:00
Jan (janneke) Nieuwenhuizen
d64a6d267d
gnu: automake: Support cross-build. 
Automake does not cross-built properly: it lacks the concept of
<tool>-for-build.  It runs the host `autoconf' during build.

* gnu/packages/autotools.scm (automake)[inputs]: Add autoconf, bash-minimal
and perl.  To avoid triggering a rebuild, do this while cross-compiling only.
[arguments]: When cross-building, add `patch-non-shebang-references' phase to
substitute autoconf and perl.
 2020-04-23 07:28:02 +02:00
Jan (janneke) Nieuwenhuizen
b085d43633
gnu: autoconf: Support cross-build. 
Autoconf does not cross-built properly: it lacks the concept of
<tool>-for-build.  It runs the host `autom4te' (a perl script) during build.

* gnu/packages/autotools.scm (autoconf)[inputs]: Add bash-minimal, perl, and
m4.  To avoid triggering a rebuild, do this while cross-compiling only.
[arguments]: When cross-building, add `patch-non-shebang-references' phase to
substitute the host bash, m4 and perl.
 2020-04-23 07:18:47 +02:00
Ryan Prior
c47f48d972
gnu: Add visidata. 
* gnu/packages/visidata.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-23 07:08:07 +02:00
Nicolas Goaziou
179c59c3d3
gnu: Add pyzo. 
* gnu/packages/python-xyz.scm (pyzo): New variable.
 2020-04-23 01:12:41 +02:00
Brendan Tildesley
50d31a40f1
gnu: Add piper. 
* gnu/packages/gnome.scm (piper): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-23 00:55:51 +02:00
Brendan Tildesley
2cd1de321f
gnu: Add libratbag. 
* gnu/packages/gnome.scm (libratbag): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-23 00:49:16 +02:00
Brendan Tildesley
e74b2c8e68
gnu: Add python-evdev. 
* gnu/packages/linux.scm (python-evdev): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-23 00:49:16 +02:00
Raghav Gururajan
159e9dce17
gnu: Add udevil. 
* gnu/packages/disk.scm (udevil): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-23 00:19:21 +02:00
Nicolas Goaziou
e36065c1a4
gnu: emacs-4clojure: Fix typos in description. 
* gnu/packages/emacs-xyz.scm (emacs-4clojure)[description]: Fix typos.
 2020-04-23 00:13:11 +02:00
Nicolas Goaziou
034a3eacf7
gnu: emacs-4clojure: Fix version. 
* gnu/packages/emacs-xyz.scm (emacs-4clojure)[version]: Use `git-version' as
there is no proper release.
 2020-04-23 00:10:08 +02:00
Alberto Eleuterio Flores Guerrero
4e74cef97a
gnu: Add emacs-4clojure. 
* gnu/packages/emacs-xyz.scm (emacs-4clojure): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-23 00:06:23 +02:00
Raghav Gururajan
5483a2d0a9
gnu: font-gnu-freefont: Add otf and woff font types. 
* gnu/packages/fonts.scm (font-gnu-freefont): Add otf and woff font types.
* gnu/packages/genealogy.scm (gramps)[inputs]: Replace font-gnu-freefont-tff
with font-gnu-freefont.
* doc/guix.texi: Adjust a reference to the package.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-22 17:59:44 -04:00
John Soo
9fb2b7eeab
gnu: clipmenu: Fix hash. 
* gnu/packages/xdisorg.scm (clipmenu):[origin] Update hash.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-22 23:55:33 +02:00
John Soo
541ec4d6e8
gnu: Add emacs-xclip. 
* gnu/packages/emacs-xyz.scm (emacs-xclip): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-22 23:47:59 +02:00
Efraim Flashner
2213d00fac
gnu: wget2: Add support for gnu updater. 
* gnu/packages/wget.scm (wget2)[properties]: New field. Add
ftp-directory.
 2020-04-22 23:35:54 +03:00
Efraim Flashner
c9508c4337
gnu: commoncpp: Add support for gnu updater. 
* gnu/packages/telephony.scm (commoncpp)[properties]: New field. Add
ftp-directory, upstream-name.
 2020-04-22 23:34:20 +03:00
Efraim Flashner
6ecce47180
gnu: osip: Update to 5.1.1. 
* gnu/packages/telephony.scm (osip): Update to 5.1.1.
 2020-04-22 23:16:39 +03:00
Efraim Flashner
6439c340a8
gnu: osip: Add support for gnu updater. 
* gnu/packages/telephony.scm (osip)[properties]: New field. Add
upstream-name, ftp-directory.
 2020-04-22 23:14:19 +03:00
Efraim Flashner
f13f02f8b3
gnu: gama: Update to 2.08. 
* gnu/packages/gps.scm (gama): Update to 2.08.
 2020-04-22 23:10:22 +03:00
Efraim Flashner
a9164807bd
gnu: parallel: Update to 20200422. 
* gnu/packages/parallel.scm (parallel): Update to 20200422.
 2020-04-22 23:10:22 +03:00
Efraim Flashner
eee4173ccc
gnu: guile-8sync: Add support for gnu updater. 
* gnu/packages/guile-xyz.scm (guile-8sync)[properties]: New field. Add
upstream-name.
 2020-04-22 23:10:22 +03:00
Felix Gruber
6ca2d7dae0
gnu: maths: dune-*: Update to version 2.7 
* gnu/packages/maths.scm (dune-*): Update to version 2.7.
(dune-uggrid)[source] Download from Git, as no release tarball for
version 2.7 exists.
(dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no
tags for version 2.7 exist (yet?).
(dune-istl)[source](patches) Add patch required to build version 2.7
without openmpi.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-22 19:23:58 +02:00
Raghav Gururajan
3183148992
gnu: Add blueman. 
* gnu/packages/networking.scm (blueman): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-22 19:23:57 +02:00
Andreas Enge
f916ac128a
gnu: pari-gp: Update to 2.11.4. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.11.4.
 2020-04-22 18:29:52 +02:00
Marius Bakke
8e61dbc828
gnu: ungoogled-chromium: Update to 81.0.4044.122-0.31d6e60 [security fixes]. 
This fixes CVE-2020-6459, CVE-2020-6460, and CVE-2020-6458.

* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.122.
(%ungoogled-revision): Set to 31d6e60c96481599b42072b4489e4468280198e3.
(%chromium-origin, %ungoogled-origin): Update hashes.
 2020-04-22 16:08:26 +02:00
Marius Bakke
808d12bb08
gnu: qt@4: Update source URI. 
* gnu/packages/qt.scm (qt-4)[source](uri): Adjust to current.
 2020-04-22 16:08:26 +02:00
Ricardo Wurmus
cbd2e1edc8
gnu: Remove mumimu. 
* gnu/packages/mail.scm (mumimu): Remove variable.
 2020-04-22 15:44:30 +02:00
Ricardo Wurmus
decf7f6c41
gnu: mumi: Update to 0.0.0-16.9175199. 
* gnu/packages/mail.scm (mumi): Update to 0.0.0-16.9175199.
[inputs]: Add guile-xapian; remove mumimu.
 2020-04-22 15:44:30 +02:00
Guillaume Le Vaillant
618819aa2f
gnu: Add w-scan. 
* gnu/packages/video.scm (w-scan): New variable.
 2020-04-22 11:02:43 +02:00
Arun Isaac
ed248424d8
gnu: Add font-meera-inimai. 
* gnu/packages/fonts.scm (font-meera-inimai): New variable.
 2020-04-22 09:58:38 +05:30
Arun Isaac
d2b237d0cc
gnu: Add python-google-brotli. 
* gnu/packages/compression.scm (python-google-brotli): New variable.
 2020-04-22 09:58:28 +05:30
Mark H Weaver
6e8f58fe31
gnu: linux-libre: Update to 5.4.34. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.34.
(linux-libre-5.4-pristine-source): Update hash.
 2020-04-21 18:22:09 -04:00
Mark H Weaver
5800d54bee
gnu: linux-libre@5.6: Update to 5.6.6. 
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.6.
(linux-libre-5.6-pristine-source): Update hash.
 2020-04-21 18:21:11 -04:00
Mark H Weaver
fe8b2fc24a
gnu: linux-libre@4.19: Update to 4.19.117. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.117.
(linux-libre-4.19-pristine-source): Update hash.
 2020-04-21 18:20:03 -04:00
Marius Bakke
e5109374d8
gnu: qt@4: Hide the default GCC from CPLUS_INCLUDE_PATH. 
* gnu/packages/qt.scm (qt-4)[native-inputs]: Distinguish GCC-5.
[arguments]: Add phase to hide the default GCC from CPLUS_INCLUDE_PATH to fix
conflicting headers.
 2020-04-22 00:08:26 +02:00
Marius Bakke
3994b55cd6
gnu: python-jedi: Fix test failure with Python 3.8. 
* gnu/packages/python-xyz.scm (python-jedi)[arguments]: Add phase
'adjust-test-for-python-3.8'.
 2020-04-22 00:08:26 +02:00
Marius Bakke
f9ea3b2427
gnu: python-pyrsistent: Fix build with Pytest 5. 
* gnu/packages/python-xyz.scm (python-pyrsistent)[arguments]: New field.
 2020-04-22 00:08:26 +02:00
Marius Bakke
ce784e6c28
gnu: GNOME: Only include Eye of GNOME on x86_64-linux. 
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Conditionally add EOG.
 2020-04-22 00:08:21 +02:00
Leo Famulari
0b9a117765
gnu: OpenSSL: Update to 1.1.1g [fixes CVE-2020-1967]. 
* gnu/packages/tls.scm (openssl)[replacement]: Replace with openssl-1.1.1g.
(openssl-1.1.1e): Replace variable with ...
(openssl-1.1.1g): ... this.
 2020-04-21 16:03:29 -04:00
Michael Rohleder
a1c34680b3
gnu: emacs-dired-toggle-sudo: Update to 1.0-0.13bbe52. 
* gnu/packages/emacs-xyz.scm (emacs-dired-toggle-sudo): Update to 1.0-0.13bbe52.
* gnu/packages/patches/emacs-dired-toggle-sudo-emacs-26.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-21 12:53:56 -04:00
Ludovic Courtès
7681246325
gnu: shepherd: Add Guile 2.0 variant. 
* gnu/packages/admin.scm (guile2.0-shepherd): New variable.
 2020-04-21 16:33:21 +02:00
Ludovic Courtès
e3358a831e
gnu: shepherd: Update to 0.8.0. 
* gnu/packages/admin.scm (shepherd): Update to 0.8.0.
* gnu/services/shepherd.scm (shepherd-configuration-file): Use
'default-pid-file-timeout' instead of fiddling with '%pid-file-timeout'.
 2020-04-21 16:33:21 +02:00
Ricardo Wurmus
d10e7a348c
gnu: guile-xapian: Update to 0.1.0. 
* gnu/packages/guile-xyz.scm (guile-xapian): Update to 0.1.0.
 2020-04-21 14:34:47 +02:00
Pjotr Prins
0e64f12db5
gnu: Add python-rdflib-jsonld. 
* gnu/packages/rdf.scm (python-rdflib-jsonld): New variable.
 2020-04-21 12:41:47 +03:00
Efraim Flashner
5d29808bea
gnu: rdf.scm: Use license: prefix. 
* gnu/packages/rdf.scm: Use a 'license:' prefix for package licenses
instead of only importing a select number of licenses.
 2020-04-21 12:38:19 +03:00
Vagrant Cascadian
5327b399a8
gnu: Add u-boot-pinebook-pro-rk3399. 
* gnu/packages/bootloaders (u-boot-pinebook-pro-rk3399): New variable.
* gnu/packages/patches/u-boot-DT-for-Pinebook-Pro.patch: New file.
* gnu/packages/patches/u-boot-add-boe-nv140fhmn49-display.patch: New file.
* gnu/packages/patches/u-boot-gpio-keys-binding-cons.patch: New file.
* gnu/packages/patches/u-boot-leds-common-binding-con.patch: New file.
* gnu/packages/patches/u-boot-support-Pinebook-Pro-laptop.patch: New file.
* gnu/packages/patches/u-boot-video-rockchip-fix-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add new patches.
* gnu/bootloader/u-boot.scm (install-pinebook-pro-rk3399-u-boot,
  u-boot-pinebook-pro-rk3399-bootloader): New variable.

Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org>
 2020-04-20 19:13:35 -07:00
Raghav Gururajan
41169f21e6
gnu: liblinphone: Fix icons. 
* gnu/packages/linphone.scm (liblinphone): Fix icons.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2020-04-20 21:50:27 -04:00
Vagrant Cascadian
ce5f4701d1
gnu: obs: Update to 25.0.7. 
* gnu/packages/video (obs): Update to 25.0.7.
 2020-04-20 15:10:18 -07:00
Ludovic Courtès
b6cb4aeff8
gnu: mcron: Remove now unneeded phase. 
This is a followup to a52aa7fdef.

* gnu/packages/guile-xyz.scm (mcron)[arguments]: Remove
'fix-finding-guile'.
 2020-04-21 00:06:39 +02:00
Leo Famulari
b023a8acd3
gnu: cgit: Update Git source code to 2.25.4. 
* gnu/packages/version-control.scm (cgit)[inputs]: Update git-source to 2.25.4.
 2020-04-20 16:21:08 -04:00
Leo Famulari
781af06533
gnu: Git: Update to 2.26.2 [fixes CVE-2020-11008]. 
* gnu/packages/version-control.scm (git): Update to 2.26.2.
[native-inputs]: Update git-manpages.
 2020-04-20 16:21:04 -04:00
Naga Malleswari
2eac967ab7
gnu: xfce.scm: Sort module imports. 
* gnu/packages/xfce.scm: Sort module imports.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-04-20 21:32:22 +02:00
R Veera Kumar
9b3c231e3c
gnu: libqalculate: Fix libcurl gnutls CA cert bundle file. 
* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (libqalculate)[source]: Use it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-04-20 20:05:09 +02:00
Raghav Gururajan
e71c7f6abe
gnu: Add midori. 
* gnu/packages/web-browsers.scm (midori): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-20 18:54:33 +02:00
Eric Brown
e68c8d3ef8
gnu: Add r-bridgesampling. 
* gnu/packages/cran.scm (r-bridgesampling): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-20 15:11:08 +02:00
Jan (janneke) Nieuwenhuizen
4e0059beb1
gnu: tar: Disable troublesome tests on the Hurd. 
The sparse03.at test apparently freezes the Hurd; messages
on the console:

165: listing sparse files bigger than 2^33

ext2fs: device:hd0s1: warning: bit already cleared for block 245780
ext2fs: device:hd0s1: warning: bit already cleared for block 245781
ext2fs: device:hd0s1: warning: bit already cleared for block 245782
...
ext2fs: BUG: unexpected fault on disk image ... err 0xa
ext2fs: disk-pager.c:98: fault_handler: Assertion 'err' failed.

the other tests just fail.

* gnu/packages/base.scm (tar)[arguments]: When compiling for the Hurd,
skip `sparse' and failing tests.
 2020-04-20 08:28:50 +02:00
Jan (janneke) Nieuwenhuizen
aa8db0ed0d
gnu: coreutils: Mark three more tests XFAIL on the Hurd. 
* gnu/packages/base.scm (coreutils)[arguments]: Add three more failing tests.
 2020-04-20 08:00:45 +02:00
Jan (janneke) Nieuwenhuizen
a7c3c5dcca
gnu: cmake: Remove "libuv" dependency for the Hurd. 
* gnu/packages/cmake.scm (cmake-bootstrap)[inputs]: When compiling for the
Hurd, remove "libuv".
 2020-04-20 08:00:25 +02:00
Jan (janneke) Nieuwenhuizen
2d49f17512
gnu: tls: Remove datefudge and disable tests on the Hurd. 
* gnu/packages/tls.scm (gnutls)[arguments]: When compiling for the Hurd,
disable tests.
[native-inputs]: When compiling for the Hurd, do not include datefudge.
 2020-04-20 08:00:18 +02:00
Efraim Flashner
a8f01c45c6
gnu: java-bouncycastle: Don't use unstable tarball. 
* gnu/packages/java.scm (java-bouncycastle)[source]: Download using
git-fetch. Use upstream's repo, not a mirror.
 2020-04-20 08:42:06 +03:00
Efraim Flashner
6632fc2897
gnu: java-lz4: Don't use unstable tarball. 
* gnu/packages/java.scm (java-lz4)[source]: Download using git-fetch.
[arguments]: Add phase to make files writable.
 2020-04-20 08:42:06 +03:00
Efraim Flashner
e9917c696b
gnu: java-fest-assert: Don't use unstable tarball. 
* gnu/packages/java.scm (java-fest-assert)[source]: Download using
git-fetch.
 2020-04-20 08:42:06 +03:00
Efraim Flashner
79e7400883
gnu: java-fest-test: Don't use unstable tarball. 
* gnu/packages/java.scm (java-fest-test)[source]: Download using
git-fetch.
 2020-04-20 08:42:06 +03:00
Efraim Flashner
00f3190d6b
gnu: java-fest-util: Don't use unstable tarball. 
* gnu/packages/java.scm (java-fest-util)[source]: Download using
git-fetch.
 2020-04-20 08:42:06 +03:00
Efraim Flashner
8c2a6183de
gnu: graphene: Update to 1.10.0. 
* gnu/packages/gtk.scm (graphene): Update to 1.10.0.
[build-system]: Switch to meson-build-system.
[arguments]: Update configure-flags to not install tests.
[inputs]: Remove python2. Move gobject-introspection ...
[native-inputs]: ... to here. Remove autoconf, automake, libtool, which.
 2020-04-20 08:42:05 +03:00
Efraim Flashner
6914eea01d
gnu: sparql-query: Sort inputs alphabetically. 
* gnu/packages/databases.scm (sparql-query)[inputs]: Sort alphabetically.
 2020-04-20 08:42:05 +03:00
Efraim Flashner
ce64b9d136
gnu: sparql-query: Don't use unstable tarball. 
* gnu/packages/databases.scm (sparql-query)[source]: Download using
git-fetch.
 2020-04-20 08:42:02 +03:00
Jan (janneke) Nieuwenhuizen
eaff60b35f
gnu: perl: Actually produce a host perl when cross-compiling. 
* gnu/packages/patches/perl-cross.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[native-inputs]: When cross-compiling, add
`perl-cross' input and perl-cross.patch.
[arguments]: When cross-compiling, use them to produce binary for host.
 2020-04-20 07:37:37 +02:00
Maxim Cournoyer
48acdefe2e
gnu: linphoneqt: Add the missing ring sound files. 
* gnu/packages/linphone.scm (linphoneqt)[phases]: Add an
'extend-shared-resources phase.
 2020-04-19 22:04:46 -04:00
Pierre Langlois
096a0527a1
gnu: mu: Update to 1.4. 
* gnu/packages/mail.scm (mu): Update to 1.4.
[arguments]: Remove 'fix-date-tests phase. Add 'patch-bin-sh-in-tests phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-19 18:36:27 -04:00
Julien Lepiller
4313e6ec55
gnu: php: Update to 7.4.5. 
* gnu/packages/php.scm (php): Update to 7.4.5.
 2020-04-19 22:57:16 +02:00
Danny Milosavljevic
58d5b8b44b
Revert "gnu: libxfce4util: Update to 4.15.0." 
This reverts commit c0bff513a4.
 2020-04-19 18:44:24 +02:00
Marius Bakke
7abe35febe
Merge branch 'master' into core-updates 2020-04-19 16:53:01 +02:00
Jan (janneke) Nieuwenhuizen
457ded48c5
gnu: git: Fix for cross-compiling to the Hurd. 
* gnu/packages/version-control.scm (git)[arguments]: When cross-compiling, fix
`config.mak.uname' kludge to use the host system configuration.
 2020-04-19 16:18:01 +02:00
Jan (janneke) Nieuwenhuizen
fc17900583
gnu: git: Resurrect cross-compilation. 
* gnu/packages/version-control.scm (git-cross-configure-flags): Add missing
"ac_cv_iconv_omits_bom" flag.
(git)[arguments]: Avoid modify-PATH stage when cross-compiling as it depends
on non-present "bash-for-tests".
 2020-04-19 16:18:01 +02:00
Jan (janneke) Nieuwenhuizen
1c5063af86
gnu: commencement: Build fix for python-boot0 on the Hurd. 
Unlike during a non-chroot'ed build on Debian/Hurd, there is no /usr/include.

* gnu/packages/commencement.scm (python-boot0)[arguments]: When building on
the Hurd, add `fix-regen' stage to correct a reference to "/usr".
 2020-04-19 16:18:01 +02:00
Jan (janneke) Nieuwenhuizen
189bfb555d
gnu: python: Build fix for the Hurd. 
* gnu/packages/python.scm (python-2.7)[arguments]: Add `fix-regen'
stage to correct a reference to "/usr".
(python-3.8): Remove build fix for 2.x..3.5.9 that breaks on 3.8.2.
 2020-04-19 16:18:00 +02:00
Marius Bakke
0e907e27ed
gnu: boost-static: Adjust for Python 3 migration in Boost. 
* gnu/packages/boost.scm (boost-static)[arguments]: Adjust libboost_python27.a
file name to take the Python 3 counterpart in the provide_libboost_python phase.
 2020-04-19 15:52:35 +02:00
Nicolas Goaziou
5c10d55206
gnu: emacs-org-superstar: Update to 1.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.2.1.
 2020-04-19 14:33:30 +02:00
Raghav Gururajan
a3cbcbaf8b
gnu: Add notification-daemon. 
* gnu/packages/gnome.scm (notification-daemon): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-19 13:27:07 +02:00
Martin Becze
0639a24038
gnu: Add trezord-udev-rules. 
* gnu/packages/finance.scm (trezord-udev-rules): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-19 13:27:06 +02:00
Kei Kebreau
45b320d9f8
gnu: gdm: Update patch for GDM 3.34. 
* gnu/packages/patches/gdm-default-session.patch: Update patch for new version
of GDM.
 2020-04-18 18:36:00 -04:00
Kei Kebreau
123e429e4c
gnu: libical: Enable introspection and Vala bindings. 
* gnu/packages/calendar.scm (libical)[arguments]: Enable introspection and
Vala bindings.
[native-inputs]: Add gobject-introspection and vala.

(cherry picked from commit 1538791f2003620ff3436cba316a594931a5ab72)
 2020-04-18 16:51:31 -04:00
Kei Kebreau
5b4ebb42dc
gnu: gnome-maps: Update to 3.34.2. 
* gnu/packages/geo.scm (gnome-maps): Update to 3.34.2.

(cherry picked from commit 08c5ffd3c283cd479602540cce4e0d40be4f4187)
 2020-04-18 16:51:31 -04:00
Kei Kebreau
3a7e066f71
gnu: cheese: Update to 3.34.0. 
* gnu/packages/gnome.scm (cheese): Update to 3.34.0.
[build-system]: Use meson-build-system.
[arguments]: Set #:glib-or-gtk? flag.  Adjust 'skip-gtk-update-icon-cache'
phase and run it after the 'unpack' phase.
[native-inputs]: Add docbook-xsl, gtk-doc, and libxslt.

(cherry picked from commit e96f871c3603da785e31a3c130ae1d1a64827a93)
 2020-04-18 16:51:31 -04:00
Kei Kebreau
30e76da115
gnu: orca: Update to 3.34.1. 
* gnu/packages/gnome.scm (orca): Update to 3.34.1.

(cherry picked from commit f6342be942f03c8e63f6fbe863597c0e5f8ffc83)
 2020-04-18 16:51:30 -04:00
Kei Kebreau
c73054669b
gnu: gnome-shell-extensions: Update to 3.34.2. 
* gnu/packages/gnome.scm (gnome-shell-extensions): Update to 3.34.2.

(cherry picked from commit c7587d3ef346554468475202c4ec436ad4ef3b65)
 2020-04-18 16:51:30 -04:00
Kei Kebreau
4add1bae4b
gnu: gnome-tweaks: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-tweaks): Update to 3.34.0.
[arguments]: Add phase to skip gtk-update-icon-cache.
[native-inputs]: Remove gtk+:bin.
[inputs]: Add libhandy.

(cherry picked from commit 097da4b45a2e7d39d586e4a36973b1eaea9df9e8)
 2020-04-18 16:51:30 -04:00
Kei Kebreau
27dd1d76b2
gnu: gnome-calendar: Update to 3.34.2. 
* gnu/packages/gnome.scm (gnome-calendar): Update to 3.34.2.
[arguments]: Add phase to skip gtk-update-icon-cache.
[native-inputs]: Remove gtk+:bin.

(cherry picked from commit 2f7f0be50c267a55624ac27b44542aebfffdad5e)
 2020-04-18 16:51:30 -04:00
Kei Kebreau
feee5ff5e8
gnu: gnome-clocks: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-clocks): Update to 3.34.0.
[arguments]: Add phase to skip gtk-update-icon-cache.
[native-inputs]: Remove gtk+:bin.

(cherry picked from commit 0293a06e5524ca9e894f111f68c1c9e7b6263810)
 2020-04-18 16:51:30 -04:00
Kei Kebreau
18364fbc30
gnu: gnome-klotski: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-klotski): Update to 3.34.0.

(cherry picked from commit d2fce9c85e92cd7b1ebcd69ef130fb31f9d51bc9)
 2020-04-18 16:51:29 -04:00
Kei Kebreau
8ae23a1d16
gnu: devhelp: Update to 3.34.0. 
* gnu/packages/gnome.scm (devhelp): Update to 3.34.0.

(cherry picked from commit df8dfba27d09cb19c94f81b666bc7ad91c65fb79)
 2020-04-18 16:51:29 -04:00
Kei Kebreau
857eb19088
gnu: gnome-sudoku: Update to 3.34.1. 
* gnu/packages/gnome.scm (gnome-sudoku): Update to 3.34.1.

(cherry picked from commit d82cdcd537040e53e1c423a7994c0c773f2c71d6)
 2020-04-18 16:51:29 -04:00
Kei Kebreau
d79e9b1bb6
gnu: gnome-mines: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-mines): Update to 3.34.0.

(cherry picked from commit 92a7370c01161ea6aafb71460f74f469cb400394)
 2020-04-18 16:51:29 -04:00
Kei Kebreau
1efcf72293
gnu: seahorse: Update to 3.34. 
* gnu/packages/gnome.scm (seahorse): Update to 3.34.
[source]: Remove obsolete patch.
* gnu/packages/patches/seahorse-gtk-use-0-on-empty-flags.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

(cherry picked from commit df3e812fe42a13325ca5b223a115fb2d3dbfd446)
 2020-04-18 16:51:29 -04:00
Kei Kebreau
28457ae6fe
gnu: gnome-shell: Update to 3.34.2. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.34.2.
[source]: Add patch.
[native-inputs]: Add asciidoc.
[inputs]: Add gnome-autoar.
* gnu/packages/patches/gnome-shell-theme.patch: Adjust patch accordingly.
* gnu/packages/patches/gnome-shell-disable-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

(cherry picked from commit 4ac325aa9bf8dd237f5b5be7a1523d957be0067f)
 2020-04-18 16:51:29 -04:00
Kei Kebreau
76e1830c03
gnu: gjs: Update to 1.58.3. 
* gnu/packages/gnome.scm (gjs): Update to 1.58.3.
[native-inputs]: Add dconf.

(cherry picked from commit be62a1b5a5d0d2c237beae6ddafebe9c6ef887fa)
 2020-04-18 16:51:28 -04:00
Kei Kebreau
9064cde1a9
gnu: telepathy-glib: Disable failing tests. 
* gnu/packages/glib.scm (telepathy-glib)[arguments]: Add phase to disable
failing tests.

(cherry picked from commit 9049e4d808f241dd88ddcb6a0f74b0766624fb08)
 2020-04-18 16:51:28 -04:00
Kei Kebreau
0fda99c572
gnu: gdm: Update to 3.34.1. 
* gnu/packages/gnome.scm (gdm): Update to 3.34.1.
[arguments]: Adjust 'pre-configure' phase accordingly.

(cherry picked from commit b989db762e17b7bdb64b1f0e3156bc92a2f2dc32)
 2020-04-18 16:51:21 -04:00
Kei Kebreau
ec3ceabd6e
gnu: mutter: Update to 3.34.2. 
* gnu/packages/gnome.scm (mutter): Update to 3.34.2.
[arguments]: Add configure flag to disable profiling.  Update configure flag
that adds to the RUNPATH.  Remove obsolete 'disable-werror' and 'use-elogind'
phases.
[native-inputs]: Add desktop-file-utils.

(cherry picked from commit b9686aea5170e528893433de4f563dd9b1a68cc0)
 2020-04-18 16:49:57 -04:00
Kei Kebreau
961dc62d19
gnu: totem: Update to 3.34.1. 
* gnu/packages/gnome.scm (totem): Update to 3.34.1.

(cherry picked from commit 513a19c38116795c811e6421004ac8f7d83525fa)
 2020-04-18 16:49:57 -04:00
Kei Kebreau
8069ff0bc4
gnu: nautilus: Update to 3.34.2. 
* gnu/packages/gnome.scm (nautilus): Update to 3.34.2.
[arguments]: Add 'skip-gtk-update-icon-cache' phase.
[native-inputs]: Remove gtk+:bin.

(cherry picked from commit ba1d88e83aeb2e6b3ec4006c901f687235cd63c0)
 2020-04-18 16:49:57 -04:00
Kei Kebreau
80f6f9d86e
gnu: gnome-terminal: Update to 3.34.2. 
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.34.2.

(cherry picked from commit c09d94546b75ecdd334494ed1730d44de551f29b)
 2020-04-18 16:49:57 -04:00
Kei Kebreau
d5101dab53
gnu: gnome-screenshot: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-screenshot): Update to 3.34.0.
[arguments]: Add 'skip-gtk-update-icon-cache' phase.
[native-inputs]: Remove gtk+:bin.

(cherry picked from commit e822ab3c7b6072c053b25a175ba802b515edff44)
 2020-04-18 16:49:56 -04:00
Kei Kebreau
14faeadd9e
gnu: gnome-keyring: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.34.0.

(cherry picked from commit 44f210ab90566446c8ccf0a53c663a3d555bad9e)
 2020-04-18 16:49:56 -04:00
Kei Kebreau
262e660ef4
gnu: gnome-disk-utility: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.34.0.
[arguments]: Add configure flag to enable elogind support.
[inputs]: Add elogind.

(cherry picked from commit 586eb32f09e8a654272040b578bf6a99876c9f7d)
 2020-04-18 16:49:56 -04:00
Kei Kebreau
c576328d77
gnu: gnome-control-center: Update to 3.34.2. 
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.34.2.
[arguments]: Add 'skip-gtk-update-icon-cache' phase.
[native-inputs]: Remove gtk+:bin.

(cherry picked from commit 093ab99e4f2d5b10ea604cfb469e47f19b187401)
 2020-04-18 16:49:56 -04:00
Kei Kebreau
201547590d
gnu: gnome-settings-daemon: Update to 3.34.1. 
* gnu/packages/gnome.scm (gnome-settings-daemon): Update to 3.34.1.
[arguments]: Add configure flag to build without systemd.
[inputs]: Add gcr and modem-manager.

(cherry picked from commit 048875f365d1591ad45853e76bda180d32f2bef7)
 2020-04-18 16:49:56 -04:00
Kei Kebreau
f67ce0069a
gnu: gnome-session: Update to 3.34.2. 
* gnu/packages/gnome.scm (gnome-session): Update to 3.34.2.

(cherry picked from commit 12a88070138ca2f11ebecf0aa0c7ae3b71b0032e)
 2020-04-18 16:49:55 -04:00
Kei Kebreau
b3492e39d7
gnu: gnome-contacts: Update to 3.34. 
* gnu/packages/gnome.scm (gnome-contacts): Update to 3.34.
[arguments]: Add 'skip-gtk-update-icon-cache' phase.
[native-inputs]: Remove gtk+:bin.

(cherry picked from commit c8be9392f03522f7a98ca787d31aa2372635a762)
 2020-04-18 16:49:55 -04:00
Kei Kebreau
fd11f6f304
gnu: folks: Update to 0.13.1. 
* gnu/packages/gnome.scm (folks): Update to 0.13.1.
[build-system]: Use meson-build-system.
[arguments]: Add 'skip-gtk-update-icon-cache' phase.
[inputs]: Add readline.
[native-inputs]: Add glib:bin.

(cherry picked from commit e4e7160c93baceb39686ce6bd1efe833ec5593c7)
 2020-04-18 16:49:55 -04:00
Kei Kebreau
a645a5a3bd
gnu: dbus-glib: Update to 0.110. 
* gnu/packages/glib.scm (dbus-glib): Update to 0.110.

(cherry picked from commit cff7f2f521a662d0dc01a07b5d7c2c61a7b47072)
 2020-04-18 16:49:55 -04:00
Kei Kebreau
0662fe86d2
gnu: evolution: Update to 3.34.2. 
* gnu/packages/gnome.scm (evolution): Update to 3.34.2.
[inputs]: Replace gtkspell3 with gspell.  Remove evolution-data-server
duplicate.

(cherry picked from commit aace96f48804f43b07369408ffe7ed5c074437c0)
 2020-04-18 16:49:55 -04:00
Kei Kebreau
1796994019
gnu: gnome-autoar: Update to 0.2.4. 
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.2.4.
[native-inputs]: Remove gnome-common.

(cherry picked from commit 46d713ce690235450740616249f800b288bf0a51)
 2020-04-18 16:49:55 -04:00
Kei Kebreau
162048be3b
gnu: evolution-data-server: Update to 3.34.2. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.34.2.
[arguments]: Adjust 'disable-failing-tests' phase.
* gnu/packages/patches/evolution-data-server-libical-compat.patch: Update patch.

(cherry picked from commit 3febbdc80004c907507dbf4162bf6e7bfde74d28)
 2020-04-18 16:49:54 -04:00
Kei Kebreau
462d3416a8
gnu: libgweather: Update to 3.34.0. 
* gnu/packages/gnome.scm (libgweather): Update to 3.34.0.

(cherry picked from commit fea74bf26d1a77129da919f2eb7473c94a947200)
 2020-04-18 16:49:54 -04:00
Kei Kebreau
e8f4bf6b42
gnu: gnome-bluetooth: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-bluetooth): Update to 3.34.0.

(cherry picked from commit 9d875e791fcca55807cdce623842b80eac0bf345)
 2020-04-18 16:49:54 -04:00
Kei Kebreau
ea9f74b032
gnu: glib-networking: Update to 2.62.2. 
* gnu/packages/gnome.scm (glib-networking): Update to 2.62.2.

(cherry picked from commit 48d8c3b28f4edb2607e84334ffdf064850642318)
 2020-04-18 16:49:54 -04:00
Kei Kebreau
edec7128df
gnu: gedit: Update to 3.34.1. 
* gnu/packages/gnome.scm (gedit): Update to 3.34.1.

(cherry picked from commit 49c537dab1cd4ff7aa154c5817e0c83c2ee02197)
 2020-04-18 16:49:54 -04:00
Kei Kebreau
5a30f67fdb
gnu: epiphany: Update to 3.34.2. 
* gnu/packages/gnome.scm (epiphany): Update to 3.34.2.

(cherry picked from commit 7c4411701354e84d877816e095f01c1075cbff9d)
 2020-04-18 16:49:54 -04:00
Kei Kebreau
c94db354c3
gnu: libdazzle: Update to 3.34.1. 
* gnu/packages/gnome.scm (libdazzle): Update to 3.34.1.

(cherry picked from commit 781da7d80b6b3a8e48b922acb754a5ba47f1d98b)
 2020-04-18 16:49:53 -04:00
Kei Kebreau
8468117e45
gnu: gsettings-desktop-schemas: Update to 3.34.0. 
* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 3.34.0.

(cherry picked from commit fdfaefaaf4ee56a34276cbf6d431bf388518dd6a)
 2020-04-18 16:49:53 -04:00
Kei Kebreau
0856b0d976
gnu: gnome-backgrounds: Update to 3.34.0. 
* gnu/packages/gnome.scm (gnome-backgrounds): Update to 3.34.0.

(cherry picked from commit 873082931dd5e25320cc77c7ba2bec1e36520f46)
 2020-04-18 16:49:53 -04:00
Kei Kebreau
8a7afc8159
gnu: gnome-desktop: Update to 3.34.2. 
* gnu/packages/gnome.scm (gnome-desktop): Update to 3.34.2.

(cherry picked from commit 8ff022afb1da6ae4eb345e0f9836e285c137b9c2)
 2020-04-18 16:49:53 -04:00
Kei Kebreau
0c9031fa1b
gnu: eog: Update to 3.34.1. 
* gnu/packages/gnome.scm (eog): Update to 3.34.1.
[inputs]: Replace librsvg with librsvg-next.

(cherry picked from commit 904227e94edbe97f4c28871a9d2e899936c08692)
 2020-04-18 16:49:53 -04:00
Kei Kebreau
720aa20f35
gnu: dconf-editor: Update to 3.34.2. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.34.2.
[arguments]: Remove obsolete 'set-glib-minimum-version' phase.
[home-page]: Follow permanent redirect.

(cherry picked from commit 929ad4f3f3e33add34bd9eebebdd08e9476063b6)
 2020-04-18 16:49:53 -04:00
Kei Kebreau
7f4d075d3e
gnu: dconf: Update to 3.34.0. 
* gnu/packages/gnome.scm (dconf): Update to 3.34.0.

(cherry picked from commit a720afbc4e0b7366261e5c4784fc9bb807bd4f87)
 2020-04-18 16:49:52 -04:00
Kei Kebreau
e21788f2cc
gnu: adwaita-icon-theme: Update to 3.34.3. 
* gnu/packages/gnome.scm (adwaita-icon-theme): Update to 3.34.3.

(cherry picked from commit e8cccae4e1964df5bbe63c37bc5b23dea5e19709)
 2020-04-18 16:48:31 -04:00
Efraim Flashner
de5200ada9
gnu: python-cython: Update to 0.29.16. 
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.16.
 2020-04-18 22:50:59 +03:00
Efraim Flashner
cac674d99d
gnu: qrcodegen-cpp: Update to 1.6.0. 
* gnu/packages/aidc.scm (qrcodegen-cpp): Update to 1.6.0.
 2020-04-18 22:23:51 +03:00
Efraim Flashner
0144f8def8
gnu: vim-asyncrun: Update to 2.7.5. 
* gnu/packages/vim.scm (vim-asyncrun): Update to 2.7.5.
 2020-04-18 22:23:48 +03:00
Leo Famulari
d7041a69ed
gnu: libavif: Update to 0.7.1. 
* gnu/packages/image.scm (libavif): Update to 0.7.1.
[arguments]: Run the test suite.
 2020-04-18 15:08:36 -04:00
Giacomo Leidi
190f460f98
gnu: Add node-semver. 
* gnu/packages/node-xyz.scm (node-semver): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-18 21:36:26 +03:00
Efraim Flashner
6a825d8c0d
gnu: chess: Update to 6.2.6. 
* gnu/packages/games.scm (chess): Update to 6.2.6.
 2020-04-18 21:01:52 +03:00
Efraim Flashner
dc9b1835d2
gnu: chess: Set upstream name and ftp-directory. 
* gnu/packages/games.scm (chess)[properties]: New field. Add
upstream-name and ftp-directory.
 2020-04-18 20:57:15 +03:00
Christopher Baines
cef392f393
guix: self: Use guile with libgc-7. 
Rather than libgc version 8. This should avoid crashes that can occur,
particularly when loading data in to the Guix Data Service [1].

1: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=40525

* gnu/packages/guile.scm (guile-3.0/libgc-7): New variable.
* guix/self.scm (specification->package): Use guile-3.0/libgc-7 for guile.
 2020-04-18 15:49:44 +01:00
Raghav Gururajan
45fd28f764
gnu: linphoneqt: Fix crashes. 
The application was crashing when clicking on the Preferences menu or the
conference icon.

* gnu/packages/patches/linphoneqt-tabbutton.patch: Add file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linphone.scm (linphoneqt)[source]: Use it.
[inputs]: Add qtquickcontrols.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2020-04-18 01:31:41 -04:00
Leo Famulari
5a8ef3c127
gnu: Use the test-only time zone database where appropriate. 
* gnu/packages/backup.scm (duplicity)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-for-tests.
* gnu/packages/finance.scm (ledger): Likewise.
* gnu/packages/compression.scm (lhasa)[native-inputs]: Use tzdata-for-tests.
* gnu/packages/cran.scm (r-rstan)[native-inputs]: Likewise.
* gnu/packages/databases.scm (mongodb)[native-inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (kdelibs4support)[native-inputs]: Likewise.
 2020-04-17 17:26:56 -04:00
Martin Becze
abb37b3c62
gnu: trezord: Update to 2.0.29. 
* gnu/packages/finance.scm (trezord): Update to 2.0.29.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-17 23:18:32 +02:00
TomZ
4e3314a4c5
gnu: fulcrum: Update to 1.1.0 
* gnu/packages/finance.scm (fulcrum): Update to 1.1.0

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-17 23:18:32 +02:00
Mark H Weaver
f0da92cb42
gnu: linux-libre: Update to 5.4.33. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.33.
(linux-libre-5.4-pristine-source): Update hash.
 2020-04-17 15:02:04 -04:00
Mark H Weaver
4298fbe2ce
gnu: linux-libre@5.6: Update to 5.6.5. 
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.5.
(linux-libre-5.6-pristine-source): Update hash.
 2020-04-17 15:01:25 -04:00
Mark H Weaver
e419e972bc
gnu: linux-libre@4.19: Update to 4.19.116. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.116.
(linux-libre-4.19-pristine-source): Update hash.
 2020-04-17 15:00:19 -04:00
Marius Bakke
a7dbd38859
gnu: ungoogled-chromium: Update to 81.0.4044.113-0.b484ad4 [fixes CVE-2020-6457]. 
* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.113.
(%chromium-origin): Update hash.
 2020-04-17 17:03:20 +02:00
Ricardo Wurmus
974bf81776
gnu: python-pygenometracks: Update to 3.3. 
* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3.
[arguments]: Add phase "relax-requirements"; disable tests.
[propagated-inputs]: Remove python-configparser and python-hicexplorer; add
python-gffutils, python-pysam, and python-tqdm.
 2020-04-17 15:53:03 +02:00
Ricardo Wurmus
d8fce2362b
gnu: Add python-hicmatrix. 
* gnu/packages/bioinformatics.scm (python-hicmatrix): New variable.
 2020-04-17 15:53:03 +02:00
Ricardo Wurmus
c55beaecd8
gnu: python-cooler: Update to 0.8.7. 
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7.
[propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and
python-simplejson.
[native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add
python-pytest.
 2020-04-17 15:53:03 +02:00
Ricardo Wurmus
4a085ffc16
gnu: python-pybigwig: Update to 0.3.17. 
* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.17.
 2020-04-17 15:53:03 +02:00
Ricardo Wurmus
d3f292b8dc
gnu: python-tables: Update to 3.6.1. 
* gnu/packages/python-xyz.scm (python-tables): Update to 3.6.1.
[arguments]: Adjust use-gcc phase.
 2020-04-17 15:53:03 +02:00