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Author SHA1 Message Date
pukkamustard
c168dc5ad1
gnu: Update coq-interval to 4.8.0. 
* gnu/packages/coq.scm (coq-interval): Update to 4.8.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I17e2426aacd84289eff538a195b79683eb98fe9f
 2024-02-08 23:15:41 +01:00
pukkamustard
e154a7f43a
gnu: Update coq-stdpp to 1.8.0. 
* gnu/packages/coq.scm (coq-stdpp): Update to 1.8.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: Id44b29296fa6de706b0a3eac90616ba0de126f87
 2024-02-08 23:15:37 +01:00
pukkamustard
3f9d44b0bd
gnu: Update coq-autosubst to 1.8. 
* gnu/packages/coq.scm (coq-autosubst): Update to 1.8.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I36b226afd3ed043977c6188dcb6bdeaf2e402de8
 2024-02-08 23:15:25 +01:00
pukkamustard
9ae0ff50ac
gnu: Update coq-mathcomp to 1.17.0. 
* gnu/packages/coq.scm (coq-mathcomp): Update to 1.17.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: Ia8397f94b7158128e6473811355a2c596c98970b
 2024-02-08 23:15:23 +01:00
pukkamustard
db7c87e070
gnu: Update coq-coquelicot to 3.4.0. 
* gnu/packages/coq.scm (coq-coquelicot): Update to 3.4.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I14c18abdbb7bebea75ac26be9c4c1954778cef22
 2024-02-08 23:15:20 +01:00
pukkamustard
4b7cc09c8b
gnu: Update coq-gappa to 1.5.3. 
* gnu/packages/coq.scm (coq-gappa): Update to 1.5.3.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: Icc124d8a2d7a55717651d135d6817871b5bc6321
 2024-02-08 23:15:18 +01:00
pukkamustard
95c30e0334
gnu: Update coq-flocq to 4.1.1. 
* gnu/packages/coq.scm (coq-flocq): Update to 4.1.1.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: Ib2d8fb4701d03a5e796736ab5b2a30dc6897dc22
 2024-02-08 23:15:15 +01:00
pukkamustard
fe0c13b1f9
gnu: ocaml: Update to 4.14.1. 
* gnu/packages/ocaml.scm (ocaml): Update to 4.14.1.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I46de8b8bfac9250420175d0d16473c6cc8ee4198
 2024-02-08 23:14:54 +01:00
Sharlatan Hellseher
90fe823638
gnu: nats-server: Update to 2.10.10. 
* gnu/packages/high-availability.scm (nats-server): Update to 2.10.10.

Change-Id: Ic34d8a4672b188c8d3d10141f9227cab4075fd5b
 2024-02-08 21:46:23 +00:00
Sharlatan Hellseher
34cff59d8b
gnu: go-github-com-nats-io-nats-go: Update to 1.32.0. 
* gnu/packages/golang-xyz.scm (go-github-com-nats-io-nats-go): Update to 1.32.0.

Change-Id: I094dffb0757672067d29b102d12a268264758ea5
 2024-02-08 21:46:23 +00:00
Sharlatan Hellseher
312cacf29a
gnu: go-github-com-nats-io-nkeys: Update to 0.4.7. 
* gnu/packages/golang-crypto.scm (go-github-com-nats-io-nkeys): Update to 0.4.7.

Change-Id: I75ab528c844ab5d046f297bdf9009d30c86eb90a
 2024-02-08 21:46:23 +00:00
Benjamin
2d084f23a2
gnu: Add nats-server. 
* gnu/packages/messaging.scm (nats-server): New variable.

Change-Id: Idb05684fae798b37d396279f136f11fce85e2e02
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-08 21:46:23 +00:00
Benjamin
e3146f55e8
gnu: Add go-github-com-nats-io-nats-go. 
* gnu/packages/golang-xyz.scm (go-github-com-nats-io-nats-go): New variable.

Change-Id: Ic2897e20fdcd8d68505f8a96281071fe3de224c9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-08 21:46:22 +00:00
Benjamin
99c5d31e8b
gnu: Add go-github-com-nats-io-jwt-v2. 
* gnu/packages/golang-crypto.scm (go-github-com-nats-io-jwt-v2): New variable.

Change-Id: I5253db9ceb1aa118cfc15e89823903f3f5b2b75c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-08 21:46:22 +00:00
Benjamin
dddc3b20bd
gnu: Add go-github-com-nats-io-nkeys. 
* gnu/packages/golang-crypto.scm (go-github-com-nats-io-nkeys): New variable.

Change-Id: Id82a9afd15f110426fd7a16b286b5af5cae45c6a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-08 21:46:22 +00:00
Benjamin
870f604aa6
gnu: Add go-github-com-nats-io-nuid. 
* gnu/packages/golang-xyz.scm (go-github-com-nats-io-nuid): New variable.

Change-Id: I71ef84703b6971cabacafcba09d1447544fb48bf
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-08 21:46:22 +00:00
Benjamin
98f8a2a34e
gnu: Add go-go-uber-org-automaxprocs. 
* gnu/packages/golang-xyz.scm (go-go-uber-org-automaxprocs): New variable.

Change-Id: I06abcaf3f3b74e23e5808d4ff37a93a0dc45b137
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-08 21:46:22 +00:00
Benjamin
d6866b6cbe
gnu: Add go-github-com-prashantv-gostub. 
* gnu/packages/golang-check.scm (go-github-com-prashantv-gostub): New variable.

Change-Id: I2ffde6cb83e4c7f6b2e412b38341add952803719
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-08 21:46:22 +00:00
Benjamin
ff61ca41d9
gnu: Add go-github-com-minio-highwayhash. 
* gnu/packages/golang-crypto.scm (go-github-com-minio-highwayhash): New variable.

Change-Id: Ib6aa8a38946841e840b17848b07434487f0435ef
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-08 21:46:22 +00:00
Liliana Marie Prikler
8798f940ad
Revert update to Renpy 8.2. 
This reverts commits 9d53c236a6,
2bfe8e95ef, and
08ed3ec64e as a temporary fix to
<https://bugs.gnu.org/68982>.
 2024-02-08 22:05:09 +01:00
Ricardo Wurmus
24e87f64cf
gnu: Add python-geoip2fast. 
* gnu/packages/geo.scm (python-geoip2fast): New variable.

Change-Id: Ia1ca57ac281c487db65ad3474940e8326082b7a1
 2024-02-08 19:20:25 +01:00
Andrew Tropin
a903558577
gnu: elixir: Remove wrap for mix. 
* gnu/packages/elixir.scm (elixir)[#:phases]: Instead of wrapping mix into
shell script, which sets environment variables, we patch mix itself and set
environmnet variables via elixir code.

Change-Id: Ia4643e18fe927491242a0541938b7570bd56fca1

Co-authored-by: Ivan Sokolov <ivan-p-sokolov@ya.ru>
Change-Id: I29d2c61299a8a54125f0e15190c526a860d501da
 2024-02-08 12:07:53 +03:00
unwox
5d2302a195
gnu: janet: Update to 1.33.0 
* gnu/packages/lisp.scm (janet): Update to 1.33.0.

Change-Id: Ic5dd8b0c7042fe965c940d291331803f7f28e3f2
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 16:31:26 +01:00
Felix Gruber
d7c34bc099
gnu: qgis: Fix build against proj 9.3.1. 
* gnu/packages/geo.scm (qgis)[arguments]: Disable newly broken tests
  test_core_overlayexpression and PyQgsProjectionSelectionWidgets.

Change-Id: If80c1d86b00f4d9481ada17b99962754b5efdc92
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 14:02:55 +01:00
Felix Gruber
8736c6357d
gnu: grass: Update to 7.8.8. 
* gnu/packages/geo.scm (grass): Update to 7.8.8.

Change-Id: Ife86e2f770e1a3bbc907e9baf25253dbff7e5653
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 13:54:28 +01:00
Felix Gruber
556a7484f1
gnu: python-pyshp: Update to 2.3.1. 
* gnu/packages/geo.scm (python-pyshp): Update to 2.3.1.
  [arguments]: Disable test that requires network access.

Change-Id: Iba7bd8191c17ecf255375a8443319b449057e094
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 13:53:23 +01:00
Felix Gruber
4ad6872979
gnu: python-shapely: Update to 2.0.2. 
* gnu/packages/python-xyz.scm (python-shapely): Update to 2.0.2.
[native-inputs]: Remove python-pytest-cov.

Change-Id: I4358c16d53c97a0cd38e3689d65ead770b2e997c
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 13:50:53 +01:00
Felix Gruber
0a1d503b28
gnu: geos: Update to 3.12.1. 
* gnu/packages/geo.scm (geos): Update to 3.12.1.
  [arguments]: Update 'patch-test-shebangs.

Change-Id: I4c5a7dd0ce0e95f813474ff4841a844e63451d24
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 13:44:26 +01:00
Felix Gruber
a042bfcd7e
gnu: libgeotiff: Fix build with proj 9.3.1. 
* gnu/packages/geo.scm (libgeotiff): [source]: Add patches to fix build
  with proj 9.3.1.
* gnu/local.mk: Add patch files.
* gnu/packages/patches/libgeotiff-fix-tests-on-i386.patch: New file.
* gnu/packages/patches/libgeotiff-fix-tests-with-proj-9.3.0.patch: New
  file.
* gnu/packages/patches/libgeotiff-fix-tests-with-proj-9.3.1.patch: New
  file.

Change-Id: I5f09e793698b0b137888faa0f595ef06850c6160
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 13:41:57 +01:00
Felix Gruber
e25fa3f6da
gnu: python-pyproj: Update to 3.6.1. 
* gnu/packages/geo.scm (python-pyproj): Update to 3.6.1.
[arguments]: Convert to gexp.

Change-Id: I0ef2bf3da8d35b728f4ba4009caca33fa18dbad3
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 13:36:57 +01:00
Felix Gruber
4c1a7678b2
gnu: proj: Update to 9.3.1. 
* gnu/packages/geo.scm (proj): Update to 9.3.1.

Change-Id: I176efdba12761b81b90c8a53c362e4e66bd08fca
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-07 13:30:33 +01:00
Efraim Flashner
10dba10fd6
gnu: Register missing patch. 
* gnu/local.mk (dist_patch_DATA): Add missing patch.

Change-Id: I82264a8cbea1550522994292e24f702f7cc78700
 2024-02-07 10:30:50 +02:00
Sharlatan Hellseher
cce7a6d2d2
gnu: python-ipydatawidgets: Fix build. 
As seen in <http://ci.guix.gnu.org/build/3396112/log/raw>.

* gnu/packages/jupyter.scm (python-ipydatawidgets) [arguments]
<#:phases>: Disable 3 failing tests in 'check phase.

Change-Id: I8de3678914e871df5bbb50c69c322dc4b55d18ac
 2024-02-06 22:48:50 +00:00
Sharlatan Hellseher
5729b2b352
gnu: python-traittypes: Simplify package. 
* gnu/packages/python-science.scm (python-traittypes) [build-system]:
Swap to pyproject-build-system.
[arguments]: Move excluded tests to <#:test-flags>. Use standard 'check
phase.

Change-Id: I4cab0c94036a7e5f0851edf2833dfac2f675d2a0
 2024-02-06 21:11:40 +00:00
Sharlatan Hellseher
5dee582c13
gnu: python-pynrrd: Update to 1.0.0. 
* gnu/packages/python-science.scm (python-pynrrd): Update to 1.0.0.
[arguments]: Keep 'ensure-no-mtimes-pre-1980 phase as it's building with
it successfully.
[propagated-inputs]: Add python-nptyping and python-typing-extensions.

Change-Id: Ic4dcd0825e71d3eb4acd39694bee9e22e8485f9f
 2024-02-06 19:56:05 +00:00
Sharlatan Hellseher
ac18dfc675
gnu: python-pynrrd: Improve description. 
* gnu/packages/python-science.scm (python-pynrrd) [description]: Add
definition of NRRD.

Change-Id: I0335df0eb4be600d81799da64374ddfb49b06720
 2024-02-06 19:49:50 +00:00
Antero Mejr
36f5db706c
gnu: Add python-pynrrd. 
* gnu/packages/python-science.scm (python-pynrrd): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-06 19:40:17 +00:00
Andy Tai
7d3aa578ef
gnu gnuatro: Update to 0.22. 
* gnu/packages/astronomy.scm (gnuastro): Update to 0.22.

Change-Id: Ifa8329765adb2b32b9b04c1531087363a807613d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-06 19:00:56 +00:00
Mădălin Ionel Patrașcu
b13d6c5715
gnu: Add r-imifa. 
* gnu/packages/cran.scm (r-imifa): New variable.

Change-Id: I0046faadb9546ae1fa8437db72b784307deba241
 2024-02-06 17:41:50 +01:00
Mădălin Ionel Patrașcu
e8292cc60e
gnu: Add r-mvnfast. 
* gnu/packages/cran.scm (r-mvnfast): New variable.

Change-Id: I17b1d1da941248fde466aa90304481cae9ca60fe
 2024-02-06 17:41:44 +01:00
Ricardo Wurmus
948c4c26e1
gnu: Add openmm. 
* gnu/packages/machine-learning.scm (openmm): New variable.

Change-Id: I2a296471881ffbd9356fcdd27d349aa4a7bb5132
 2024-02-06 16:19:42 +01:00
Wilko Meyer
a4464bd097
gnu: linux-libre 6.1: Update to 6.1.76. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.76.
(linux-libre-6.1-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I6e66bfadeb11a300f47fbec2bffdbc5b02d85e75
 2024-02-05 20:53:21 -05:00
Wilko Meyer
1c47327b2e
gnu: linux-libre 6.6: Update to 6.6.15. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.15.
(linux-libre-6.6-pristine-source, deblob-scripts-6.6): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>

Change-Id: I9c744e41241d083baf20d2004bb3ee445cd0a0a9
 2024-02-05 20:53:21 -05:00
Wilko Meyer
9b40e74e7c
gnu: linux-libre 6.7: Update to 6.7.3. 
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.3.
(linux-libre-6.7-pristine-source, deblob-scripts-6.7): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>

Change-Id: I56b489855db37962ccf9ccccdf09fabf65648e89
 2024-02-05 20:53:17 -05:00
Troy Figiel
1eda62a266
gnu: go-github-com-operatorfoundation-ed25519: Add missing input. 
* gnu/packages/golang-crypto.scm (go-github-com-operatorfoundation-ed25519)
[native-inputs]: Add go-golang-org-x-crypto.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-05 22:34:48 +00:00
Troy Figiel
34fe725fb3
gnu: go-github-com-go-git-go-billy: Add missing input. 
* gnu/packages/golang.scm (go-github-com-go-git-go-billy)
[propagated-inputs]: Add go-golang-org-x-sys.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ia1fee47a497dcd1221ec6a8b2b6bbd549662e470
 2024-02-05 22:34:47 +00:00
Troy Figiel
c1a4de630c
gnu: go-github-com-cheekybits-genny: Add missing input. 
* gnu/packages/golang.scm (go-github-com-cheekybits-genny)
[native-inputs]: Add go-github-com-stretchr-testify.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ib3b9a0aefa8218d26527e4401952ad72d6cc625d
 2024-02-05 22:34:47 +00:00
Troy Figiel
f33473e7b2
gnu: misspell: Add missing input. 
* gnu/packages/golang.scm (misspell) [propagated-inputs]: Add go-github-com-gobwas-glob.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I1c080a8fbb6f0a0294e28e4697438ab31ebca3cc
 2024-02-05 22:34:47 +00:00
Troy Figiel
067fa9448f
gnu: go-github-com-jmespath-go-jmespath: Add missing input. 
* gnu/packages/golang-web.scm (go-github-com-jmespath-go-jmespath)
[native-inputs]: Add go-github-com-stretchr-objx.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I98f2bf971b2edf41c6f36ed118bbe33727f0267b
 2024-02-05 22:34:47 +00:00
Troy Figiel
3ce5778adb
gnu: go-github-com-kr-text: Update to 0.2.0. 
* gnu/packages/golang.scm (go-github-com-kr-text): Update to 0.2.0.
[propagated-inputs]: Add go-github-com-creack-pty.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-05 22:34:47 +00:00
Greg Hogan
857507117d
gnu: texstudio: Update to 4.7.2. 
* gnu/packages/tex.scm (texstudio): Update to 4.7.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-05 23:12:11 +01:00
Greg Hogan
8a68ed5e8d
gnu: xsnow: Update to 3.7.7. 
* gnu/packages/toys.scm (xsnow): Update to 3.7.7.
[inputs]: Add gsl and move gtk+ to ...
[propagated-inputs]: ... here and add gdk-pixbuf.

Change-Id: I45ba6bffc670180ffd713bc098513e5d4cd3dc23
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-05 23:03:36 +01:00
Greg Hogan
dbe014a106
gnu: fmt-10: Update to 10.2.1. 
* gnu/packages/pretty-print.scm (fmt-10): Update to 10.2.1.

Change-Id: I11e0828c120f1f14c8c9f1c080d0608f81354ae3
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-05 23:00:12 +01:00
Greg Hogan
5618fd5d6f
gnu: spdlog: Update to 1.13.0. 
* gnu/packages/logging.scm (spdlog): Update to 1.13.0.
[source]: Remove upstreamed patch.
* gnu/local.mk: Unregister it.
* gnu/packages/patches/spdlog-fix-tests.patch: Delete file.

Change-Id: I78b5021b9841d16f43a283eaee931b4f92746ab8
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-05 22:54:51 +01:00
Luis Felipe
28434e496c
gnu: Add font-oswald. 
* gnu/packages/fonts.scm (font-oswald): New variable.

Change-Id: Ief63b944b722d5ed1b3cabd041bcd75948a1f59e
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-05 22:43:18 +01:00
Andre A. Gomes
3d9600ba12
gnu: emacs-desktop-environment: Update to 0.5.0-0.bc1153a. 
* gnu/packages/emacs-xyz.scm (emacs-desktop-environment): Update to 0.5.0-0.bc1153a.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-05 22:42:21 +01:00
Juliana Sims
eec108eb65
gnu: qpwgraph: Update to 0.6.2. 
* gnu/packages/audio.scm (qpwgraph): Update to 0.6.2.

Change-Id: I4b05ea71f08dd4c5bcc59f2a86069ad068f4a84f
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-05 22:39:54 +01:00
Leo Nikkilä
841fd4880a
linux-container: Inherit essential services. 
Currently it's not possible to set `essential-services' when building
operating systems for containers, since `container-essential-services'
always uses the defaults.

It's possible to reference `essential-services' from the operating
system that's passed in, but since it's thunked, the operating system
needs to be defined in two passes to avoid an infinite loop.

* gnu/system/linux-container.scm (container-essential-services): Use
operating-system-essential-services instead of the defaults to allow
overriding the base services.
(containerized-operating-system): Update accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: I81452487ef1ad01d3fa874c26d93a67d58ce6062
 2024-02-05 22:29:45 +01:00
Artyom V. Poptsov
317d9840d3
gnu: Add go-github-com-gabriel-vasile-mimetype. 
* gnu/packages/golang.scm (go-github-com-gabriel-vasile-mimetype): New
  variable.

Change-Id: Icb1624eb9a890b6f711dacf5ff80f15b041f3b7d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-05 15:42:51 +00:00
Clément Lassieur
a3df20db8c
gnu: Add mullvadbrowser. 
* gnu/packages/tor-browsers.scm (%moz-build-date): Rename to
%torbrowser-build-date.
(make-torbrowser, torbrowser): Add a ‘build-date’ parameter and use it.
(%mullvadbrowser-locales, %mullvadbrowser-build-date, %mullvadbrowser-version,
%mullvadbrowser-firefox-version, translation-mullvad-browser,
mullvadbrowser-assets, mullvadbrowser-base, mullvadbrowser): New variables.

Change-Id: Ie6d48823b3794710f60f0ae201a0297925221f66
 2024-02-05 15:05:41 +01:00
Andre A. Gomes
393c526089
gnu: nyxt: Update to 3.11.2. 
* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-05 14:36:05 +01:00
Charles
9c9a19dba5
gnu: cl-legit: Update to 1.0.0-3.9c677b9. 
* gnu/packages/lisp-xyz.scm (sbcl-legit): Update to 1.0.0-3.9c677b9.

Change-Id: Ib6ea65b196df9a82c6d4cf7c360fd8f97b5e1819
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-05 14:36:05 +01:00
Charles
a442b46e28
gnu: cl-command-line-args: Update to version 0.1.1. 
* gnu/packages/lisp-xyz.scm (sbcl-command-line-args): Update to 0.1.1.

Change-Id: I8f95ab80b8f79a6aaa3155fb5058821186fd9d5f
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-05 14:36:05 +01:00
Charles
87f5876e60
gnu: Add cl-modf. 
* gnu/packages/lisp-xyz.scm (sbcl-modf, cl-modf, ecl-modf): New variables.

Change-Id: Ic7e8e4511ca537531a7d9aa134e671aca060aa09
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-05 14:36:05 +01:00
Sergey Trofimov
d8472f7164
gnu: emacs-telega-server: Update to 0.8.240. 
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to 0.8.240.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-02-05 16:31:37 +03:00
Sergey Trofimov
b51542d991
gnu: tdlib: Update to 1.8.24. 
* gnu/packages/messaging.scm (tdlib): Update to 1.8.24.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-02-05 16:31:36 +03:00
Georgios Athanasiou
5a806face5
gnu: guile-yamlpp: Update to 0.3. 
* gnu/packages/guile-xyz.scm (guile-yamlpp): Update to 0.3.

Change-Id: I47e3e909cadc81219b8cb2bc32a86eccd73f7d4a
Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2024-02-05 15:27:22 +08:00
kiasoc5
12b2af0536
gnu: clamav: Update to 0.103.11. 
* gnu/packages/antivirus.scm (clamav): Update to 0.103.11.

Change-Id: I8aaed3f1225b6ff80d403be42a1370327a41b3da
Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2024-02-05 15:14:45 +08:00
Troy Figiel
b0d7e4923e
gnu: go-github-com-docker-go-connections: Update to 0.5.0. 
* gnu/packages/golang.scm (go-github-com-docker-go-connections): Update to 0.5.0.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
Change-Id: I742db180c55048e997df159377a212fb238455f8
 2024-02-05 15:13:07 +08:00
Artyom V. Poptsov
bab883b981
gnu: guile-ics: Fix cross-compilation. 
* gnu/packages/guile-xyz.scm (guile-ics): Fix cross-compilation.
[native-inputs]: Add "guile-3.0", "guile-lib" and "guile-smc".
(guile2.2-ics)[native-inputs]: Replace them with variants for Guile 2.2.

Change-Id: Ie35f8087b1db30992f63edac8d303f854139ecbf
Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2024-02-05 15:03:12 +08:00
Artyom V. Poptsov
81660f9a10
gnu: guile-ics: Update to 0.6.0. 
* gnu/packages/guile-xyz.scm (guile-ics): Update to 0.6.0.
[inputs]: Remove "which".
(guile2.2-ics)[inputs]: Likewise.

Change-Id: I969b2dfe7f3007001930ba132821f6427a367e9e
Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2024-02-05 14:32:00 +08:00
Hilton Chain
049ca6d476
gnu: Add egl-gbm. 
* gnu/packages/xorg.scm (egl-gbm): New variable.

Change-Id: Idb7785e898f7289ddc6100d3d11b797db163ca3e
 2024-02-05 14:13:22 +08:00
Hilton Chain
082cb39219
gnu: egl-wayland: Update to 1.1.13. 
* gnu/packages/xorg.scm (egl-wayland): Update to 1.1.13.

Change-Id: I2ecc5776e80f3bcebcfbbcde34865692a8758845
 2024-02-05 14:13:04 +08:00
Hilton Chain
afe5da41ba
gnu: emacs-wanderlust: Update to 2.15.9-818.9fd2c65. 
* gnu/packages/emacs-xyz.scm (emacs-wanderlust): Update to 2.15.9-818.9fd2c65.

Change-Id: Ib485c9250f226b46ac0e0a325c79014924478299
 2024-02-05 14:11:55 +08:00
Hilton Chain
68b8e5edb7
gnu: emacs-semi-epg: Update to 1.14.6-248.9063a44. 
* gnu/packages/emacs-xyz.scm (emacs-semi-epg): Update to 1.14.6-248.9063a44.

Change-Id: Ib3841801d8528003f77ddf92c8a530618c446311
 2024-02-05 14:10:21 +08:00
Hilton Chain
d3660bf93c
gnu: emacs-flim-lb: Update to 1.14.9-142.abdd231. 
* gnu/packages/emacs-xyz.scm (emacs-flim-lb): Update to 1.14.9-142.abdd231.

Change-Id: Ib5c7615ae70fd4b68c7585a30bc8e32f75dafa18
 2024-02-05 14:10:02 +08:00
Hilton Chain
0b76f6f640
gnu: kconfig-hardened-check: Rename to kernel-hardening-checker. 
* gnu/packages/linux.scm (kconfig-hardened-check): Rename to…
(kernel-hardening-checker): …this.
(kconfig-hardened-check): Define as deprecated.

Change-Id: I01688d36ea6cf763f8ccc2a87a9162ebb4cbb16b
 2024-02-05 14:08:16 +08:00
Hilton Chain
c4518b65ec
gnu: kconfig-hardened-check: Update to 0.6.6. 
* gnu/packages/linux.scm (kconfig-hardened-check): Update to 0.6.6.

Change-Id: I8f60e6b7545b04059ae3dae881dcc004c70a5027
 2024-02-05 14:08:10 +08:00
Hilton Chain
0e98b8bc36
gnu: picard: Update to 2.11. 
* gnu/packages/music.scm (picard): Update to 2.11.

Change-Id: I61c4563a09f195415f6a67f657e4f9061e2f4389
 2024-02-05 14:06:49 +08:00
Hilton Chain
a792fc3710
gnu: phantomsocks: Update to 0.0.0-20240125140126-2576269ca69a. 
gnu/packages/networking.scm (phantomsocks): Update to
0.0.0-20240125140126-2576269ca69a.
[arguments]<#:go>: Use go-1.21.

Change-Id: Ib3ee928e6f5e43603d7d41cd8203e6c524167670
 2024-02-05 14:06:09 +08:00
Hilton Chain
2326201bc5
gnu: font-sarasa-gothic: Update to 1.0.5. 
* gnu/packages/fonts.scm (font-sarasa-gothic): Update to 1.0.5.

Change-Id: I53b2a12f607e0a75645759f8e9190fe7117b49cd
 2024-02-05 14:05:33 +08:00
Hilton Chain
368c6e3cf0
gnu: Add pam-uaccess. 
* gnu/packages/admin.scm (pam-uaccess): New variable.

Change-Id: I71b16e8548359fe59b2d09bb91b050bf9be33a78
 2024-02-05 14:04:32 +08:00
Hilton Chain
b896b9102b
services: kernel-module-lodaer: Add udev requirement. 
Otherwise, modules will be loaded before udev starts, and load events won't be
handled.

* gnu/services/linux.scm (kernel-module-loader-shepherd-service)[requirement]:
Add 'udev.

Change-Id: Ib65028978f96012604b54b27a56501d4388b0f34
 2024-02-05 14:04:15 +08:00
Hilton Chain
06331aec11
gnu: Add mbedtls, version 3.5.2. 
* gnu/packages/tls.scm (mbedtls): New variable.

Change-Id: I09c86ce04734bd5b44441d7749688a5c39389ece
 2024-02-05 13:56:37 +08:00
Hilton Chain
2b296427d7
gnu: mbedtls-apache: Rename to mbedtls-lts. 
* gnu/packages/tls.scm (mbedtls-apache): Rename package to "mbedtls".
Rename variable to…
(mbedtls-lts): …this.
(mbedtls-apache): Define as deprecated by mbedtls-lts.
(mbedtls-for-hiawatha): Adjust accordingly.
* doc/guix.texi: Likewise.
* gnu/packages/emulators.scm (dolphin-emu,retroarch)[inputs]: Likewise.
* gnu/packages/game-development.scm (godot-lts,godot)[inputs]: Likewise.
* gnu/packages/hardware.scm (hueplusplus,openrgb)[inputs]: Likewise.
* gnu/packages/haxe.scm (neko,haxe,hashlink)[inputs]: Likewise.
* gnu/packages/irc.scm (inspircd)[inputs]: Likewise.
* gnu/packages/julia-jll.scm (julia-mbedtls-jll)[arguments]<#:phases>,[inputs]:
Likewise.
* gnu/packages/julia.scm (julia)[arguments]<#:phases>,[inputs]: Likewise.
* gnu/packages/linphone.scm (bctoolbox)[inputs]: Likewise.
* gnu/packages/linux.scm (dislocker)[inputs]: Likewise.
* gnu/packages/networking.scm (nng)[inputs]: Likewise.
* gnu/packages/search.scm (dataparksearch)[inputs]: Likewise.
* gnu/packages/video.scm (obs)[inputs]: Likewise.
* gnu/packages/web.scm (hiawatha)[arguments]<#:phases>: Likewise.

Change-Id: I0c58b3cd0bcf6e44e7b16a69f6d2739aa3c1545b
 2024-02-05 13:56:31 +08:00
Hilton Chain
0f86c1c6f8
gnu: mbedtls-apache: Use gexps. 
* gnu/packages/tls.scm (mbedtls-apache)[arguments]: Use gexps.

Change-Id: Idefca03b8eea0d3f18497afccc4a3a081caac87e
 2024-02-05 13:56:26 +08:00
Hilton Chain
585d71ce96
gnu: mbedtls-apache: Update to 2.28.7. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.28.7.
[license]: Add gpl2+.

Change-Id: I946aa1436214a11ab3faa08b3ddf9c937a0462a9
 2024-02-05 13:56:20 +08:00
Hilton Chain
a13a0e00ea
gnu: mbedtls-for-hiawatha: Update package style. 
* gnu/packages/tls.scm (mbedtls-for-hiawatha)[arguments]: Use gexps.
Remove trailing #t.

Change-Id: I0af54b6fb7319bc811ce38c001b47686fb45b1bd
 2024-02-05 13:56:14 +08:00
Hilton Chain
8dfaf461b4
gnu: mbedtls-for-hiawatha: Use inherited source. 
* gnu/packages/tls.scm (mbedtls-for-hiawatha): Use inherited source.
[arguments]<#:phases>: Keep "-Wformat-signedness".

Change-Id: I562ae6533b518a853b9b59f8fb69c0135364277f
 2024-02-05 13:56:08 +08:00
Clément Lassieur
abeffc8237
gnu: ublock-origin: Update to 1.55.0. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.55.0.
(ublock-main-assets): Update to 0cb71ec86524082c463d2fd2e18ecdea04fe335c.
(ublock-prod-assets): Update to 21c07155353d7ecca2ffdc9e786f252a8cf00935.

Change-Id: I1a1235e2ba14166e4ec8b50c353e90f87e81559b
 2024-02-03 21:06:16 +01:00
Rikard Nordgren
c70c513317
gnu: Add node-path-key. 
* gnu/packages/node-xyz.scm (node-path-key): New variable

Change-Id: I0fc1cbbcf82622f4bf2dd6d2ca46b22605ea964a
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
 2024-02-03 18:04:18 +01:00
Tomas Volf
ec27ba6161
gnu: ngtcp2: Update to 1.2.0. 
* gnu/packages/networking.scm (ngtcp2): Update to 1.2.0.

Change-Id: Ib71911a250dd68ba9e25e93dd17a2770fc99f0bb
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
 2024-02-03 18:04:12 +01:00
Juliana Sims
179bb57d25
gnu: raylib: Update to 5.0. 
* gnu/packages/game-development.scm (raylib): Update to 5.0.

Change-Id: If3797a5f88bdd7f72d47f7f83556e16b319a38f9
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-02-03 10:55:48 +01:00
Liliana Marie Prikler
e90fe9e7a1
gnu: python-rpy2: Update to 3.5.15. 
* gnu/packages/statistics.scm (python-rpy2): Update to 3.5.15.
[inputs]: Add zlib.
[native-inputs]: Add python-coverage, python-ipython, python-numpy,
python-pandas, python-pytest, and python-pytest-cov.
 2024-02-03 10:55:07 +01:00
Liliana Marie Prikler
bba0676e86
gnu: python-tzlocal: Update to 5.2. 
* gnu/packages/time.scm (python-tzlocal): Update to 5.2.
[source]: Fetch from git.
[build-system]: Use pyproject-build-system
[propagated-inputs]: Remove python-pytz.  Add python-tzdata.
[native-inputs]: Add python-check-manifest, python-pytest, and
python-pytest-cov.
 2024-02-03 10:55:06 +01:00
Liliana Marie Prikler
bbb9b66316
gnu: Add python-tzdata. 
* gnu/packages/time.scm (python-tzdata): New variable.
* gnu/packages/base.scm (tzdata): Update comment.
 2024-02-03 10:55:06 +01:00
Liliana Marie Prikler
f05a4a00fe
gnu: Add lua-clingo. 
* gnu/packages/potassco.scm (make-lua-clingo, lua5.1-clingo)
(lua5.2-clingo): New variables.
 2024-02-03 10:55:06 +01:00
Liliana Marie Prikler
689ca1e739
gnu: Add python-plingo. 
* gnu/packages/potassco.scm (python-plingo): New variable.
 2024-02-03 10:55:06 +01:00
Liliana Marie Prikler
77b3607653
gnu: python-clorm: Reindent with emacs. 
* gnu/packages/potassco.scm (python-clorm): Reindent with emacs.
 2024-02-03 10:55:06 +01:00
Liliana Marie Prikler
9f85c0cdb1
gnu: Add python-clingo-dl. 
* gnu/packages/potassco.scm (python-clingo-dl): New variable.
 2024-02-03 10:55:06 +01:00
Liliana Marie Prikler
8deec94654
gnu: Add piglit. 
* gnu/packages/gl.scm (piglit): New variable.
 2024-02-03 10:55:06 +01:00
Liliana Marie Prikler
6ce2bd76c0
gnu: Add waffle. 
* gnu/packages/gl.scm (waffle): New variable.
 2024-02-03 10:55:06 +01:00
David Pflug
f45d051334
gnu: trydiffoscope: Update to 67.0.6. 
* gnu/packages/diffoscope.scm (trydiffoscope): Update to 67.0.6.

Signed-off-by: Vagrant Cascadian <vagrant@reproducible-builds.org>

Change-Id: I508a9ed647bbe2afc6b9ee9730ab1d5d08ade508
 2024-02-02 12:03:42 -08:00
David Pflug
9d52585ebd
gnu: diffoscope: Update to 255. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 255.

Signed-off-by: Vagrant Cascadian <vagrant@reproducible-builds.org.org>

Change-Id: Ic0eb0a34cbd82286ac294da20984c3a2ec09fe1f
 2024-02-02 10:31:55 -08:00
Artyom V. Poptsov
34e8a40dad
gnu: Add go-github-com-gregjones-httpcache. 
* gnu/packages/golang-web.scm (go-github-com-gregjones-httpcache): New
  variable.

Change-Id: I2ba0196fd1de63f26a814dc96ff64a6fb5379043
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-02 16:56:32 +00:00
Christopher Baines
f2885c3132
gnu: guix-build-coordinator: Update to 0-96.d9fa794. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-96.d9fa794.

Change-Id: I909ed95b672d3554a0f9c89c1b4158c33afb833e
 2024-02-02 14:20:46 +01:00
Christopher Baines
a3a12e2133
gnu: guile-next: Don't patch posix-spawn for the hurd. 
As the patch doesn't apply.

* gnu/packages/guile.scm (guile-3.0)[arguments]: Remove
'patch-posix-spawn-usage' phase.

Change-Id: I17f4878f7bbd74b71e559b16dc68ccf68c639987
 2024-02-02 14:20:46 +01:00
Clément Lassieur
8f9bc4e952
gnu: torbrowser: Stop inheriting Icecat. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Add packages/tor-browsers.scm.
* gnu/packages/gnupg.scm: Remove fix for dependency loop (fixed because we use
a new file).
* gnu/packages/tor-browsers.scm (mozilla-locale, mozilla-locales,
%torbrowser-locales, %moz-build-date, %torbrowser-version,
%torbrowser-firefox-version, translation-base-browser,
translation-tor-browser, torbrowser-assets, torbrowser): New variables.
(make-torbrowser): New procedure, which is a merge of ‘make-torbrowser’ (from
tor.scm) with ‘icecat-minimal’ (from gnuzilla.scm).
* gnu/packages/tor.scm (%moz-build-date, %torbrowser-version,
%torbrowser-firefox-version, %torbrowser-locales, translation-base-browser,
translation-tor-browser, torbrowser-assets, torbrowser): Remove variables.

Change-Id: I5fcf73e53fe4481a18e13cdeb3515c3dc4430090
 2024-02-02 12:00:44 +01:00
Ricardo Wurmus
c692808a5e
gnu: r-tximeta: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.3.

Change-Id: I0438d403e659f361e5bb3d24ccedd301ec5d59d5
 2024-02-01 23:23:37 +01:00
Ricardo Wurmus
9277cc4d88
gnu: r-basilisk: Update to 1.14.3. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.3.

Change-Id: I605e5a1df4047a17b631398f0db6ccdfea1638ce
 2024-02-01 23:23:37 +01:00
Ricardo Wurmus
6384b98d56
gnu: r-genomicfeatures: Update to 1.54.3. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.3.

Change-Id: I8c503aa209692357a7830b618f6dd0ac86b5e65c
 2024-02-01 23:23:37 +01:00
Ricardo Wurmus
c4e328a2b7
gnu: r-edger: Update to 4.0.14. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.14.

Change-Id: I6e620b0df01403fbf26d0a61193f463a283b25cc
 2024-02-01 23:23:36 +01:00
Ricardo Wurmus
c641665dcd
gnu: r-biomart: Update to 2.58.2. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.2.

Change-Id: Ie00a4761278b91a3d17a23a1d3f8b02ecca0f255
 2024-02-01 23:23:36 +01:00
Ricardo Wurmus
ed8876cc72
gnu: r-rrcov: Update to 1.7-5. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-5.

Change-Id: Icd311e72085e01b0bbee84d70a591b9b509c7742
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
0b1c32ab76
gnu: r-sfsmisc: Update to 1.1-17. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-17.

Change-Id: I9bbffea415d58bc42a4e0f5c611f7bf87a8fe001
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
c6059868a0
gnu: r-coda: Update to 0.19-4.1. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-4.1.

Change-Id: I6f4d9f7fe0ac81b44e3970f84f667a7757ee6b41
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
061289dc18
gnu: r-tensorflow: Update to 2.15.0. 
* gnu/packages/cran.scm (r-tensorflow): Update to 2.15.0.
[inputs]: Remove tensorflow.

Change-Id: I4537b4bd6b03b3b7d671c437e1de1aebbbb57e7c
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
722defbac9
gnu: r-readods: Update to 2.2.0. 
* gnu/packages/cran.scm (r-readods): Update to 2.2.0.

Change-Id: I1c66d1c24ab56d6d3da3b7e7c8e541cbade3fd41
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
29c4796ff9
gnu: r-strex: Update to 2.0.0. 
* gnu/packages/cran.scm (r-strex): Update to 2.0.0.
[propagated-inputs]: Add r-lifecycle.

Change-Id: I2a0ece4937539e22e1bbf80e0aefe365da19c0d5
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
afc0e0d8dc
gnu: r-mlr3misc: Update to 0.14.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.14.0.

Change-Id: Iba3cd32bfa38691ec83dee1dba980edc518c909d
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
1668c58ae0
gnu: r-infer: Update to 1.0.6. 
* gnu/packages/cran.scm (r-infer): Update to 1.0.6.
[propagated-inputs]: Add r-cli.

Change-Id: Ibdbc51f294e86a39465d4a92ca662ebbc3a0b8f3
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
6a156e2e0f
gnu: r-spatstat-explore: Update to 3.2-6. 
* gnu/packages/cran.scm (r-spatstat-explore): Update to 3.2-6.

Change-Id: I6473a1339788e6d2a0d5389ddac60a3751d75996
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
3980d01b14
gnu: r-rstantools: Update to 2.4.0. 
* gnu/packages/cran.scm (r-rstantools): Update to 2.4.0.

Change-Id: I8e8c453359abedfc4d0f3e2d1735e92f21df560f
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
b6d7a8252f
gnu: r-rsconnect: Update to 1.2.1. 
* gnu/packages/cran.scm (r-rsconnect): Update to 1.2.1.

Change-Id: I8e3e4ae23a11036941e488360afcba29ef67a517
 2024-02-01 22:35:55 +01:00
Ricardo Wurmus
369a45f2a4
gnu: r-fracdiff: Update to 1.5-3. 
* gnu/packages/cran.scm (r-fracdiff): Update to 1.5-3.

Change-Id: Ie23eff55d9d4327eac48ff37465ec962272ad139
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
f9a9b23504
gnu: r-filesstrings: Update to 3.3.0. 
* gnu/packages/cran.scm (r-filesstrings): Update to 3.3.0.

Change-Id: I829e333db3fa15894732171f4644ce9a3749abb9
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
5a37d79238
gnu: r-terra: Update to 1.7-71. 
* gnu/packages/cran.scm (r-terra): Update to 1.7-71.

Change-Id: Ic3e59b0a465c59194299a84954379fa7f47386c3
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
a03425007d
gnu: r-compositions: Update to 2.0-8. 
* gnu/packages/cran.scm (r-compositions): Update to 2.0-8.

Change-Id: I8ae449f8d64ab26e9f06fe8ea904832d0dd43d9e
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
ffedad4abb
gnu: r-bayesplot: Update to 1.11.0. 
* gnu/packages/cran.scm (r-bayesplot): Update to 1.11.0.

Change-Id: I061dc8275625969cf56acde4d60155add3178ede
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
50c84f8443
gnu: r-quickjsr: Update to 1.1.3. 
* gnu/packages/cran.scm (r-quickjsr): Update to 1.1.3.

Change-Id: I706114ebe18ebc754254ff59c34092472f8cbf0f
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
5c8059ca25
gnu: r-pscl: Update to 1.5.9. 
* gnu/packages/cran.scm (r-pscl): Update to 1.5.9.

Change-Id: I8343ff6f8f0c85b7c1952d8e01b4757c89225acc
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
ff7703e347
gnu: r-intergraph: Update to 2.0-4. 
* gnu/packages/cran.scm (r-intergraph): Update to 2.0-4.

Change-Id: Ic3301e0a5b3f510540298589f9a483e6f17adabd
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
e5b92f30a4
gnu: r-insight: Update to 0.19.8. 
* gnu/packages/cran.scm (r-insight): Update to 0.19.8.

Change-Id: I35e107cb3fb2a549f3b18967c7969ad367ab8497
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
c0f61bf972
gnu: r-reticulate: Update to 1.35.0. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.35.0.

Change-Id: I5a22c8075ef6b1995d69a0e99761c8ee289c3496
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
309f8fe251
gnu: r-magicaxis: Update to 2.4.5. 
* gnu/packages/cran.scm (r-magicaxis): Update to 2.4.5.

Change-Id: I4d4d794474e5decf27667361141af2b46b84faeb
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
00aa9f5e37
gnu: r-pastecs: Update to 1.4.2. 
* gnu/packages/cran.scm (r-pastecs): Update to 1.4.2.
[native-inputs]: Add r-knitr.

Change-Id: I1b42b00e9fd11111faef5fed1f682273a9f6cb88
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
9ea445157a
gnu: r-climaemet: Update to 1.2.1. 
* gnu/packages/cran.scm (r-climaemet): Update to 1.2.1.

Change-Id: I07e1e1c6478e44245b5c981c2446a592b00a0bdf
 2024-02-01 22:35:54 +01:00
Ricardo Wurmus
a26d6b85d7
gnu: r-ggfittext: Update to 0.10.2. 
* gnu/packages/cran.scm (r-ggfittext): Update to 0.10.2.
[propagated-inputs]: Add r-cli.

Change-Id: I0260599cd9dde4732d1c890056230e5022caf229
 2024-02-01 22:35:53 +01:00
Wiktor Żelazny
a879dd8b36
gnu: Add python-pandarallel. 
* gnu/packages/python-science.scm (python-pandarallel): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-01 21:16:14 +00:00
Sharlatan Hellseher
560b4687e5
gnu: golang-web: Adjust module commentary. 
Follow up <https://issues.guix.gnu.org/68835>.

* gnu/packages/golang-web.scm: Mention sections for library and
executable to reduce cross module inheritance.

Change-Id: I9775d5681b380063dc43e6bd38aa94cec4f0db81
 2024-02-01 20:49:00 +00:00
Thomas Ieong
df65af45b5
gnu: Add go-minify. 
* gnu/packages/golang-web.scm (go-minify): New variable.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Co-authored-by: Hilton Chain <hako@ultrarare.space>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic9b1c12ea477aa5ad194482f2ade58da029cadc4
 2024-02-01 20:49:00 +00:00
Andrew Tropin
7bf8b7c333
gnu: emacs-arei: Update to 0.9.2. 
* gnu/packages/emacs-xyz.scm (emacs-arei): Update to 0.9.2.

Change-Id: I88c376a548fc9821e56c96b9ee38d1c98d6d416b
 2024-02-01 13:51:09 +03:00
Sharlatan Hellseher
ad871fd17f
gnu: go-structlayout-pretty: Fix build. 
* gnu/packages/golang-check.scm (go-structlayout-pretty) [arguments]
<#:go>: Swap to go-1.20.

Change-Id: I3afe393468d69e8ec78c6bb62d8ac6714b15a611
 2024-02-01 07:52:03 +00:00
Sharlatan Hellseher
834c639053
gnu: go-structlayout-optimize: Fix build. 
* gnu/packages/golang-check.scm (go-structlayout-optimize) [arguments]
<#:go>: Swap to go-1.20.

Change-Id: I8ca2f7be5749e8f54c7decc84853ae3f665ba97c
 2024-02-01 07:52:03 +00:00
Sharlatan Hellseher
d2364f1797
gnu: go-structlayout: Fix build. 
* gnu/packages/golang-check.scm (go-structlayout) [arguments] <#:go>:
Swap to go-1.20.

Change-Id: I97721cec7624a89439113cf089599d4229ff1d33
 2024-02-01 07:52:02 +00:00
Sharlatan Hellseher
eff0cdd28f
gnu: go-staticcheck: Fix build. 
* gnu/packages/golang-check.scm (go-staticcheck) [arguments] <#:go>:
Swap to go-1.20.

Change-Id: Ic4550e063326d19247098f0713002359a4cc2750
 2024-02-01 07:52:02 +00:00
Sharlatan Hellseher
82dacb49b2
gnu: go-keyify: Fix build. 
* gnu/packages/golang-check.scm (go-keyify) [arguments] <#:go>: Swap to
go-20.

Change-Id: Ida1aafbbbf4c6a0ff8104c81b82b66c7ecb64218
 2024-02-01 07:52:02 +00:00
Hilton Chain
1eeeeb8add
gnu: virt-manager: Don't propagate qemu. 
The current version of virt-manager does not directly use "qemu-img" or
"kvm-img" in its source.

* gnu/packages/virtualization.scm (virt-manager)[propagated-inputs]: Move qemu
to…
[inputs]: …here.

Change-Id: I87a549b4d4f14168419ce419cb92dbf078c35381
 2024-02-01 14:21:55 +08:00
Hilton Chain
e1a084f1a8
gnu: virt-manager: Fix qemu path substitution. 
* gnu/packages/virtualization.scm (virt-manager)[arguments]<#:phases>: Adjust
‘fix-default-uri’ according to source change.

Change-Id: Ic5085841db4759096b844d6f92f81d90554709d1
 2024-02-01 14:21:49 +08:00
Hilton Chain
e6814d6c34
gnu: virt-manager: Update package style. 
* gnu/packages/virtualization.scm (virt-manager)[arguments]: Remove trailing #t.
Use gexps.
[inputs]: Sort alphabetically.
[native-inputs]: Remove labels.

Change-Id: I6efe95061ff13feb01c45809004884ab0a563d0c
 2024-02-01 14:21:42 +08:00
Hilton Chain
f6f52bb8f9
gnu: python-apsw: Update to 3.45.1.0. 
* gnu/packages/databases.scm (python-apsw): Update to 3.45.1.0.
[native-inputs]: Remove python-cython.

Change-Id: Ia478f15f4c3daf2f5e05e1f3d94d50a7de40f13c
 2024-02-01 14:21:01 +08:00
Zhu Zihao
813712ccf2
gnu: sqlite-next: Update to 3.45.1. 
* gnu/packages/sqlite.scm (sqlite-next): Update to 3.45.1.

Change-Id: If7c460e37b6b18768c59bf05472179eb0f7183f0
Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2024-02-01 14:20:55 +08:00
Josselin Poiret
ee20e6fa2e
gnu: mpv-mpris: Switch to gnu-build-system. 
* gnu/packages/video.scm (mpv-mpris)[build-system]: Use gnu-build-system again.
[arguments]<#:phases>: Run tests.
[native-inputs]: Add dbus, jq, playerctl, socat, sound-theme-freedesktop,
xorg-server-for-tests, xvfb-run.

Change-Id: I9de4ade633388ec42ac30019feb133ca98811ad9
Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2024-02-01 14:20:16 +08:00
Hilton Chain
95c2de71a4
gnu: age-keygen: Move to (gnu packages golang-crypto). 
This is a follow-up to c94fc0596f, which
introduces cyclic module dependencies.

* gnu/packages/golang.scm (age-keygen): Move to…
* gnu/packages/golang-crypto.scm (age-keygen): …here.

Change-Id: Id4f526cd07cf74304d481ca0c94b516360c8dc6c
 2024-02-01 14:19:44 +08:00
Hilton Chain
b2eac4455f
gnu: age: Move to (gnu packages golang-crypto). 
This is a follow-up to c94fc0596f, which
introduces cyclic module dependencies.

* gnu/packages/golang.scm (age): Move to…
* gnu/packages/golang-crypto.scm (age): …here.

Change-Id: I471ea739315cb052ed61c69ad52906c5c46852f5
 2024-02-01 14:19:38 +08:00
Maxim Cournoyer
c76004c574
gnu: jami: Update to 20240124.3. 
* gnu/packages/jami.scm (libjami): Update to 20240124.3.
(jami): Likewise.

Change-Id: Ib0d8d5d566c5633bf2e33b1874ded92f2e451ff5
 2024-01-31 21:59:11 -05:00
Maxim Cournoyer
055d595bf8
gnu: dhtnet: Update to 0.0.1-1.41848a2. 
* gnu/packages/networking.scm (dhtnet): Update to 0.0.1-1.41848a2.
[inputs]: Add yaml-cpp.

Change-Id: I399260201e09185c33bbd441eb1a877a43e10d9f
 2024-01-31 21:59:10 -05:00
Sharlatan Hellseher
bf7991a8c7
gnu: go-honnef-co-go-tools: Update to 0.4.6. 
* gnu/packages/golang-check.scm (go-honnef-co-go-tools): Update to 0.4.6.

Change-Id: Iac26c3147104a06a72e5910edb9fb3deba6be486
 2024-01-31 22:00:08 +00:00
Sharlatan Hellseher
cdb365eb07
gnu: golang-check: Sort packages alphabetically. 
This commit is a housekeeping measure to prepare for natural and
structured enlargement.

* gnu/packages/golang-check.scm: Improve module commentary introduce
sections for libraries and executables and sort packages alphabetically.

Change-Id: Ifcac216c1c04e569cfdf2a7d902165a36ed06b32
 2024-01-31 21:59:56 +00:00
Sharlatan Hellseher
0ab9930c0f
gnu: go-honnef-co-go-tools: Update homepage. 
Fixing lint warning by updating home page to actual one found on
project's GitHub page: URI <https://honnef.co/go/tools> returned
suspiciously small file (333 bytes)

* gnu/packages/golang-check.scm (go-honnef-co-go-tools) [home-page]:
Update it.

Change-Id: I8956b146ff3f826c11b03212c365cf91120380b6
 2024-01-31 21:20:18 +00:00
Nicolas Graves
f4dd770550
gnu: go-honnef-co-go-tools: Improve synopsis and description. 
* gnu/packages/golang-check.scm (go-honnef-co-go-tools): Improve
synopsis and description.

Change-Id: I357626457418f8c6f1b05918226c33f7faa88d49
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
a27d0f975b
gnu: Add go-structlayout-pretty. 
* gnu/packages/golang-check.scm (go-structlayout-pretty): New variable.

Change-Id: I622a991b12708ee52eb412a3c6b3fbeeb512843d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
98651390a7
gnu: Add go-structlayout-optimize. 
* gnu/packages/golang-check.scm (go-structlayout-optimize): New variable.

Change-Id: I7e1ce9acbe3ec09cc8b441de4816b247a2742938
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
b3e74eb26d
gnu: Add go-structlayout. 
* gnu/packages/golang-check.scm (go-structlayout): New variable.

Change-Id: I7440cdf75238fc73451cefc73b3ce3eb3d4da323
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
d6410c5c47
gnu: Add go-staticcheck. 
* gnu/packages/golang-check.scm (go-staticcheck): New variable.

Change-Id: I82ce27df1bdbd79ae4740928e0661b585289d02b
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
6d5fe89e8e
gnu: Add go-keyify. 
* gnu/packages/golang-check.scm (go-keyify): New variable.

Change-Id: I99d41a18cb0e00dd35bef9c2c8fce12748f24ad4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
eab88f2e45
gnu: Remove go-github-com-kisielk-gotool. 
* gnu/packages/golang-check.scm (go-github-com-kisielk-gotool): Delete variable.

Change-Id: Ic99bba40f4cd66335656f27bf7dd97d1b90bb8f1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:02:33 +00:00
Sharlatan Hellseher
b41bcc0434
gnu: go-torproject-org-pluggable-transports-goptlib: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib):
Move from here ...
gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I3bc97e64bd3680405c90eb84c2d7d3c7ff9092e0
 2024-01-31 20:14:29 +00:00
Sarah Morgensen
849f219b72
gnu: go-torproject-org-pluggable-transports-goptlib: Fix import path. 
* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib)
[arguments] <#:import-path>: Use actual module name from go.mod.
(go-github-com-operatorfoundation-shapeshifter-transports) [arguments]
<#:phases>: Remove obsolete 'patch phase for goptlib.
(go-github-com-operatorfoundation-obfs4) [arguments] <#:phases>: Likewise.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ib2e49164e2c750694101b497afe1be67c7fe6302
 2024-01-31 19:59:42 +00:00
Carlo Zancanaro
023c3e0ac4
services: certbot: Add one-shot service to renew certificates. 
* gnu/services/certbot.scm (certbot-renewal-one-shot): New procedure.
(certbot-service-type)[extensions]: Add it to shepherd-root extension.
(certbot-command): Make connection errors return a different exit code.
(certbot-activation): Remove message with certificate renewal instructions.

Change-Id: I614ac6214a753dba0396e2385a75926c8355caa1
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-31 16:54:19 +01:00
Carlo Zancanaro
d4a4b12f0a
services: certbot: Reload nginx in deploy hook. 
* gnu/services/certbot.scm (certbot-deploy-hook): Reload nginx.
* doc/guix.texi (Certificate services): Remove deploy-hook from example.

Change-Id: Ibb10481170a6fda7df72492072b939dd6a6ad176
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-31 16:54:16 +01:00
Carlo Zancanaro
fc0ec9a3cc
services: certbot: Create self-signed certificates before certbot runs. 
* gnu/services/certbot.scm (<certificate-configuration>): Add
start-self-signed? field.
(generate-certificate-gexp): New procedure.
(certbot-activation): Generate self-signed certificates when
start-self-signed? is #t.
* doc/guix.texi (Certificate services): Document start-self-signed?.

Change-Id: Icfd85ae0c3e29324acbcde6ba283546cf0e27a1d
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-31 16:54:12 +01:00
Carlo Zancanaro
a2b1ef903b
services: certbot: Symlink certificates to /etc/certs. 
* gnu/services/certbot.scm (certbot-deploy-hook): New procedure.
(certbot-command): Pass new deploy hook to certbot.
* doc/guix.texi: Replace "letsencrypt/live" with "certs" throughout, except in
the certbot deploy-hook description.

Change-Id: I2ba5e4903d1e293e566b732a84b07d5a134b697d
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-31 16:54:03 +01:00
Guillaume Le Vaillant
7a45f7b9e1
gnu: cl-maidenhead: Update to 1.1-1.4b9c38e. 
* gnu/packages/lisp-xyz.scm (sbcl-maidenhead): Update to 1.1-1.4b9c38e.

Change-Id: I766a3d70fc330cf0f1628091c6ed52f1085199e5
 2024-01-31 10:41:33 +01:00
Charles
fa023a9300
gnu: cl-command-line-args: Update to 0.1.0. 
* gnu/packages/lisp-xyz.scm (sbcl-command-line-args): Update to 0.1.0.
  [inputs]: Add sbcl-charje.documentation.

Change-Id: Iadac4decc64f2333878dd5b106e1e82c33b40e30
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-31 10:34:55 +01:00
Clément Lassieur
88e8b807d6
gnu: torbrowser: Copy buildID from the official build. 
* gnu/packages/tor.scm (%moz-build-date): Update to 20240115174022.

Reported-by: André Batista <nandre@riseup.net>
Change-Id: Ia057d6efe9db9e04ece03d994ee226ecdbc6cc04
 2024-01-31 03:02:07 +01:00
Sharlatan Hellseher
c4687f5437
Revert "gnu: Add minify." 
This reverts commit f8c2d8141e.

Fixes: error: go-github-com-tdewolff-minify-v2: unbound variable
<https://ci.guix.gnu.org/eval/1086875/log/raw>

Change-Id: I26e02842980cf09e924ac1cae8f3a6421a005276
 2024-01-30 23:56:11 +00:00
Thomas Ieong
f8c2d8141e
gnu: Add minify. 
* gnu/packages/web.scm (minify): New variable.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Co-authored-by: Hilton Chain <hako@ultrarare.space>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I7289c77a17f63501b6c7771606d396241333ac3a
 2024-01-30 22:58:22 +00:00
Thomas Ieong
aab6ea6f41
gnu: Add go-github-com-matryer-try. 
* gnu/packages/golang-check.scm (go-github-com-matryer-try): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic354425938374fcd29e871a597da63a7a390cfa1
 2024-01-30 22:58:22 +00:00
Thomas Ieong
b998d58221
gnu: Add go-github-com-djherbis-atime. 
* gnu/packages/golang-xyz.scm (go-github-com-djherbis-atime): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I320070d68e7f590f830060904f5cbdf59d839d1d
 2024-01-30 22:58:22 +00:00
Sharlatan Hellseher
376bba6030
gnu: Add (gnu packages golang-xyz) module. 
* gnu/packages/golang-xyz.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-xyz.scm scope.

Change-Id: I25e434de1adc29c2f08146f040755287c63632d6
 2024-01-30 22:58:22 +00:00
Sharlatan Hellseher
fb2b72a5f3
gnu: go-github-com-go-jose-go-jose-v3: Move to (gnu packages golang-web). 
Drop inheritance from go-gopkg-in-square-go-jose-v2 as it's archived by
the owner on Feb 27, 2023.

* gnu/packages/golang.scm (go-github-com-go-jose-go-jose-v3): Move from
here ...
* gnu/packages/golang-web.scm: ... to here.

Change-Id: I67838e18a43d93e5ae3b62e9645b7d22cf474103
 2024-01-30 22:58:22 +00:00
Ricardo Wurmus
f6bbee5f05
gnu: axoloti-patcher: Add missing headers. 
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Include generic
headers in search paths.

Change-Id: I2e1819966eb657ba4a7e0c823e6686de8599dd9a
 2024-01-30 22:44:43 +01:00
Ricardo Wurmus
c2dc19aecc
gnu: axoloti-patcher: Use G-expression. 
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use G-expression;
delete 'make-git-checkout-writable phase.

Change-Id: I4f9b98351f1752391211f1aed84d484184d32771
 2024-01-30 22:44:09 +01:00
Artyom V. Poptsov
bed3a0b547
gnu: yggdrasil: Update to 0.5.5. 
* gnu/packages/networking.scm (yggdrasil): Update to 0.5.5.

Change-Id: Iba086d544e8225ec1b08de80f0fc3f01aa1f17b3
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2024-01-30 17:11:54 +01:00
David Thompson
a901e950dd
gnu: guile-hoot: Update to 0.3.0. 
* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.3.0.

Change-Id: I355d4b11bdd45bf87e3d7227f259907b1e7d57bd
 2024-01-30 11:08:37 -05:00
Ricardo Wurmus
7cdad00e30
gnu: r-scran: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2.

Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6
 2024-01-30 16:59:52 +01:00
Ricardo Wurmus
aa7950070b
gnu: r-bioccheck: Update to 1.38.2. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2.
[propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest.

Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
8d8eec7f9d
gnu: r-flowcore: Update to 2.14.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1.

Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
9e1e462746
gnu: r-rsubread: Update to 2.16.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1.

Change-Id: Id01d956d2f76347270d05961dba13f65b268862a
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
ca6e432089
gnu: r-edger: Update to 4.0.12. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12.

Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
4df162962d
gnu: r-biostrings: Update to 2.70.2. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2.

Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
1c27a3a8a8
gnu: r-biomart: Update to 2.58.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1.

Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
6f11ca52f1
gnu: r-robustbase: Update to 0.99-2. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-2.

Change-Id: Ic6a248fd55b6b4467742040a884ed25e9d090f47
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
ef5640f763
gnu: r-viridis: Update to 0.6.5. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.5.

Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
c72ceba47f
gnu: r-commonmark: Update to 1.9.1. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1.

Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
e6847d7a2f
gnu: r-data-table: Update to 1.15.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.15.0.

Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
71936c6145
gnu: r-tfruns: Update to 1.5.2. 
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.2.

Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
08d6f49857
gnu: r-spatstat-geom: Update to 3.2-8. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8.

Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
281db78112
gnu: r-iheatmapr: Update to 0.7.1. 
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1.

Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
2435d457e8
gnu: r-emoa: Update to 0.5-2. 
* gnu/packages/cran.scm (r-emoa): Update to 0.5-2.

Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
6bde30b814
gnu: r-tidygraph: Update to 1.3.1. 
* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1.

Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
a03ad38b2f
gnu: r-xgboost: Update to 1.7.7.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.7.1.

Change-Id: I949455d58c1fdbb878a77d82e8501c5a615ed441
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
50e728fbab
gnu: r-yulab-utils: Update to 0.1.4. 
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.4.

Change-Id: Ic7e6288859a857ecbd23566b9e5bd1796206764c
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
48f41d06e8
gnu: r-bqtl: Update to 1.0-36. 
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-36.

Change-Id: I598ad41402e05e8ed628aaf57eac4a1e47689228
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
2bb1d89f97
gnu: r-listenv: Update to 0.9.1. 
* gnu/packages/cran.scm (r-listenv): Update to 0.9.1.

Change-Id: I998a9d35b176ed8dd038fd6392f46b4052e56dd7
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
8bad30c244
gnu: r-phylobase: Update to 0.8.12. 
* gnu/packages/cran.scm (r-phylobase): Update to 0.8.12.

Change-Id: I4d022d85cdb6f79fae167bfd7c52a0c2620b0092
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
b7e3c82000
gnu: r-densityclust: Update to 0.3.3. 
* gnu/packages/cran.scm (r-densityclust): Update to 0.3.3.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.

Change-Id: Ia6b5737e2225e67fa064f031d985c076694ec9ce
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
02931399e8
gnu: r-interp: Update to 1.1-6. 
* gnu/packages/cran.scm (r-interp): Update to 1.1-6.

Change-Id: I846729e1637fc0f8762cf8a235cc78df2c1eb810
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
8b0a49ad4e
gnu: r-zip: Update to 2.3.1. 
* gnu/packages/cran.scm (r-zip): Update to 2.3.1.

Change-Id: I20ff34e492271063d6baf37f59f6da181c1d7805
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
51d7fae43a
gnu: r-nestedcv: Update to 0.7.4. 
* gnu/packages/cran.scm (r-nestedcv): Update to 0.7.4.
[propagated-inputs]: Add r-rhpcblasctl.

Change-Id: Ica97cf7c960125543210c48851861d7826a8f8aa
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
775ae73c3d
gnu: r-laeken: Update to 0.5.3. 
* gnu/packages/cran.scm (r-laeken): Update to 0.5.3.

Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
f3af65b8d0
gnu: r-sp: Update to 2.1-3. 
* gnu/packages/cran.scm (r-sp): Update to 2.1-3.

Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
5701d13103
gnu: r-powerlaw: Update to 0.80.0. 
* gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0.

Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
854d1be754
gnu: r-httpuv: Update to 1.6.14. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.14.

Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
51ca656726
gnu: r-ga: Update to 3.2.4. 
* gnu/packages/cran.scm (r-ga): Update to 3.2.4.

Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
cd9e88c9d0
gnu: r-ggm: Update to 2.5.1. 
* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1.
[propagated-inputs]: Add r-biocmanager.

Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
1541c1bb17
gnu: r-rjava: Update to 1.0-11. 
* gnu/packages/cran.scm (r-rjava): Update to 1.0-11.
[source]: Remove snippet.
[arguments]: Remove 'replace-bundled-minified-JavaScript phase.
[native-inputs]: Remove esbuild.

Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb
 2024-01-30 15:48:08 +01:00
Ricardo Wurmus
1bb0d6355c
gnu: r-catdata: Update to 1.2.4. 
* gnu/packages/cran.scm (r-catdata): Update to 1.2.4.
[native-inputs]: Add r-knitr.

Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93
 2024-01-30 15:41:54 +01:00
Ricardo Wurmus
c3e2892558
gnu: r-r-devices: Update to 2.17.2. 
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.2.
[arguments]: Add 'set-HOME phase.
[native-inputs]: Add r-r-rsp.

Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c
 2024-01-30 15:41:07 +01:00
Ricardo Wurmus
67c1a96196
gnu: r-igraph: Update to 2.0.1.1. 
* gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1.
[properties]: Tell updater to keep extra native input "which".
[native-inputs]: Add pkg-config and which.

Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605
 2024-01-30 15:36:03 +01:00
Ricardo Wurmus
788657b62d
gnu: r-antiword: Update to 1.3.3. 
* gnu/packages/cran.scm (r-antiword): Update to 1.3.3.
[properties]: Tell updater not to remove "antiword" input.
[arguments]: Use G-expression.

Change-Id: Ifdbf80f546b0ab3abfc3b8002ba01b46c9105a1c
 2024-01-30 15:31:07 +01:00
Ricardo Wurmus
a4e75305e2
gnu: r-sapa: Patch call of dstebz routine. 
* gnu/packages/patches/r-sapa-lapack.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sapa)[source]: Add it.

Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105
 2024-01-30 15:16:20 +01:00
Ricardo Wurmus
a874d44053
gnu: r-with-tests: Prevent compression of libraries. 
Compression prevents Guix from detecting references.
This is a follow-up to commit ff0d34a29b.

Reported-by: Jonas Freimuth.

* gnu/packages/statistics.scm (r-with-tests)[arguments]: Do not compress
included libraries like "parallel".

Change-Id: I278d19c1504d8ac33a1fc4a941467705a37d574d
 2024-01-30 15:16:20 +01:00
Ricardo Wurmus
afe677a623
gnu: r-minimal, r-with-tests: Use G-expressions. 
* gnu/packages/statistics.scm (r-minimal, r-with-tests)[arguments]: Use
G-expressions.

Change-Id: I241297444cdb261dfc9901efd73c436a7ccf0acf
 2024-01-30 15:16:20 +01:00
Efraim Flashner
9f1ab898c3
gnu: python-scipy: Enable building on more architectures. 
* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]:
Only include python-jupytext on systems where it is supported.

Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
 2024-01-30 13:43:32 +02:00
Efraim Flashner
7bf98da98b
gnu: libhdate: Fix pkg-config file. 
* gnu/packages/calendar.scm (libhdate)[source]: Add snippet to adjust
the pkg-config file to have the correct prefix.

Change-Id: I5273f732a4e4e512057aa8bc1ecd40a81ec7828e
 2024-01-30 09:25:32 +02:00
Ian Eure
144c95032e
gnu: emacspeak: Update to 59.0. 
* gnu/packages/emacs-xyz.scm (emacspeak): Update to 59.0.
[source]: Switch to git-fetch.

Change-Id: I80e93286fa0de931e85f07c22e050faeaf8d0280
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-30 00:40:15 +01:00
Kiran Shila
cdadef6409
gnu: Add python-hdbscan. 
* gnu/packages/machine-learning.scm (python-hdbscan): New variable.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I13a78dd795490e6d4a8486741e2d5281605b7bb9
 2024-01-29 22:58:35 +00:00
Troy Figiel
cde0adaacd
gnu: Add python-pyjanitor. 
* gnu/packages/python-science.scm (python-pyjanitor): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-29 21:40:59 +00:00
Troy Figiel
343f4f1d70
gnu: Add python-unyt. 
* gnu/packages/python-science.scm (python-unyt): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-29 21:12:12 +00:00
David Thompson
370b79b4f5
gnu: guile-next: Update to commit fb1f5e2. 
* gnu/packages/guile.scm (guile-next): Update to commit fb1f5e2.

Change-Id: Ia699bf7bf950b8780366146508eec566a738fb80
 2024-01-29 13:38:35 -05:00
Maxim Cournoyer
21e4d6cd69
gnu: mumi: Update to 0.0.8. 
* gnu/packages/mail.scm (mumi): Update to 0.0.8.

Change-Id: I0342f3cfb1b257d7beb25a5d9d0732895f88ec35
 2024-01-29 10:23:15 -05:00
Maxim Cournoyer
1e0ca05c82
gnu: mumi: Update to 0.0.7. 
* gnu/packages/mail.scm (mumi): Update to 0.0.7.

Change-Id: Ia9280574a6774e27f8ab0b4654997b6518c561d2
 2024-01-29 10:16:07 -05:00
Maxim Cournoyer
2c5293afff
gnu: lugaru: Apply patch fixing sound. 
* gnu/packages/patches/lugaru-fix-sound.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (lugaru) [source]: Update source URL.
Apply patch.
[arguments]: Use gexps.
[inputs]: Remove labels and sort.

Change-Id: Iebefc9fc43d3473e51c8c732539e6aa2f14d9f5f
 2024-01-28 21:03:31 -05:00
Sharlatan Hellseher
9649f5e928
gnu: go-github-com-quic-go-qtls-go1-20: Sort package alphabetically. 
* gnu/packages/golang-crypto.scm (go-github-com-quic-go-qtls-go1-20):
Sort package alphabeticaly to consist the style.

Change-Id: Ib9d1e037dc1172b33a80dc4b40c785b53a2a0586
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
ee76f7c279
gnu: go-github-com-99designs-go-keyring: Adjust inputs. 
This package does not use GPG or password-store internally and is only
used as a dependency for aws-vault.

* gnu/packages/golang-crypto.scm (go-github-com-99designs-go-keyring):
Swap native-inputs to propagated-inputs.
[propagated-inputs]: Remove gnupg and password-store.

Change-Id: If5f57f656402058960df416bad25a76fa1b70718
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
232ed89d43
gnu: go-github.com-smartystreets-goconvey: Move to (gnu packages golang-check). 
* gnu/packages/check.scm (go-github.com-smartystreets-goconvey): Move
from here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: I19d8db6e3b07e1d165396c0498e328b70b2cc760
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
8882af2572
gnu: go-github.com-smartystreets-assertions: Move to (gnu packages golang-check). 
* gnu/packages/check.scm (go-github.com-smartystreets-assertions): Move
from here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: Ia90bbe984fe19dd48d9df91364a7ecf2bf8bd37f
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
88fea61aae
gnu: go-github.com-smartystreets-gunit: Move to (gnu packages golang-check). 
* gnu/packages/check.scm (go-github.com-smartystreets-gunit): Move from
here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: I7204e118f99064027f0e10838d2b44fee212d21d
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
965f6d74ac
gnu: go-github-com-dvsekhvalnov-jose2go: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-dvsekhvalnov-jose2go): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I4c368c9005fd079078726b9165dff380b5092405
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
c94fc0596f
gnu: go-filippo-io-age: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-filippo-io-age): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I4eeadfd946910d56d2441a3469967d681b9e8677
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
a704c8a005
gnu: go-github-com-xanzy-ssh-agent: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-xanzy-ssh-agent): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I9eff26086b2b5e9e53e9271a64060f18b6197b3c
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
d71c57a9a6
gnu: go-github-com-99designs-go-keyring: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-99designs-go-keyring): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I7615759c4cdb66a37b492f11d736b1ccfa6b21f2
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
1900b75c23
gnu: go-github-com-cespare-xxhash: Move to (gnu packages golang-crypto). 
* gnu/packages/syncthing.scm (go-github-com-cespare-xxhash): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/textutils.scm: Add (gnu packages golang-crypto) to used
modules.

Change-Id: Ic72cf6c4770cd3f03cc2e27c3455632ee16e7c09
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
bf30f46716
gnu: go-github-com-minio-blake2b-simd: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-minio-blake2b-simd): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I096cf86c48b0fdcbf7c5d0b454d45de12018c908
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
9ae4da0018
gnu: go-github-com-operatorfoundation-ed25519: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-operatorfoundation-ed25519):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Ia6a28bb8ad138b921e386f3b4d2dee65b43806d1
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
4df431e6cb
gnu: go-github-com-gxed-hashland-keccakpg: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-gxed-hashland-keccakpg): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I000004efa349f0d7548003aeecc98c94669662de
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
c8640466e6
gnu: go-github-com-flynn-noise: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-flynn-noise): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Ie08a20d57424b0ce5fc10ced2a75b29c8aa3fe7d
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
65a2f158bb
gnu: go-github-com-minio-sha256-simd: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/backup.scm: Add (gnu packages golang-crypto) to used modules.

Change-Id: I4e57a1bee0c7e19a9bb60ce5ff72ccd5e42deea5
 2024-01-28 23:21:05 +00:00