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1376 Commits

Author SHA1 Message Date
zimoun
d0429747de
gnu: python2-widgetsnbextension: Remove package. 
* gnu/packages/python-xyz.scm (python2-widgetsnbextension): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:38:06 -04:00
zimoun
d8402031af
gnu: python2-utils: Remove package. 
* gnu/packages/python-xyz.scm (python2-utils): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:38:06 -04:00
zimoun
82c772a774
gnu: python2-tables: Remove package. 
* gnu/packages/python-xyz.scm (python2-tables): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:38:06 -04:00
zimoun
97f4fd8a74
gnu: python2-stem: Remove package. 
* gnu/packages/python-xyz.scm (python2-stem): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:38:05 -04:00
zimoun
f68dbdadba
gnu: python2-sh: Remove package. 
* gnu/packages/python-xyz.scm (python2-sh): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:38:05 -04:00
zimoun
4c726e0698
gnu: python2-ipywidgets: Remove package. 
* gnu/packages/python-xyz.scm (python2-ipywidgets): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:38:05 -04:00
zimoun
5f3411e401
gnu: python2-graphql-core: Remove package. 
* gnu/packages/python-xyz.scm (python2-graphql-core): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:38:04 -04:00
zimoun
6a098614b8
gnu: python2-dulwich: Remove package. 
* gnu/packages/python-xyz.scm (python2-dulwich): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:33:20 -04:00
zimoun
6bafc5cf1e
gnu: python2-cairocffi: Remove. 
* gnu/packages/python-xyz.scm (python2-cairocffi): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:33:19 -04:00
Efraim Flashner
c721e00ef1
gnu: python-pygithub: Update to 1.54.1. 
* gnu/packages/python-xyz.scm (python-pygithub): Update to 1.54.1.
[arguments]: Remove 'disable-failing-tests, 'prepare-for-tests phases.
Add custom 'check phase.
[propagated-inputs]: Add python-cryptography.
[native-inputs]: Add python-httpretty, python-pytest.
 2021-03-21 22:24:27 +02:00
Nicolas Goaziou
aa24d2d44c
gnu: python-pikepdf: Update to 2.9.1. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.1.
 2021-03-21 10:12:52 +01:00
Léo Le Bouter
2691f57678
gnu: python-pygments: Update to 2.7.4 [fixes CVE-2021-27291]. 
* gnu/packages/python-xyz.scm (python-pygments/fixed): New variable.
(python-pygments)[replacement]: Graft.
 2021-03-17 18:36:47 +01:00
Mark H Weaver
1a265842e6
gnu: Use PACKAGE/INHERIT in more places. 
* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
 2021-03-17 03:58:10 -04:00
Ricardo Wurmus
4f02c4c4a9
gnu: snakemake: Add missing inputs. 
* gnu/packages/python-xyz.scm (snakemake)[propagated-inputs]: Add
python-nbformat, python-pulp, and python-toposort.
 2021-03-16 14:17:48 +01:00
Ricardo Wurmus
08447ab7cd
gnu: Add python-toposort. 
* gnu/packages/python-xyz.scm (python-toposort): New variable.
 2021-03-16 14:17:48 +01:00
Ricardo Wurmus
fa0a18522d
gnu: Add python-pulp. 
* gnu/packages/python-xyz.scm (python-pulp): New variable.
 2021-03-16 14:17:47 +01:00
Ricardo Wurmus
c9006a0ee1
gnu: Add python-amply. 
* gnu/packages/python-xyz.scm (python-amply): New variable.
 2021-03-16 14:17:47 +01:00
Nicolas Goaziou
c954f795f9
gnu: python-pikepdf: Update to 2.9.0. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.0.
 2021-03-16 14:09:06 +01:00
Stefan Reichör
3679286bb4
gnu: glances: Update to 3.1.6. 
* gnu/packages/python-xyz.scm (glances): Update to 3.1.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-16 09:34:41 +02:00
Tanguy Le Carrour
3e83e99322
gnu: poetry: Update to 1.1.5. 
* gnu/packages/python-xyz.scm (poetry): Update to 1.1.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2021-03-15 11:19:37 +00:00
Ricardo Wurmus
c20813bb08
gnu: Add python-lmfit. 
* gnu/packages/python-xyz.scm (python-lmfit): New variable.
 2021-03-15 11:43:20 +01:00
Ricardo Wurmus
0bd166253a
gnu: Add python-asteval. 
* gnu/packages/python-xyz.scm (python-asteval): New variable.
 2021-03-15 11:43:19 +01:00
Ricardo Wurmus
8b85aea49b
gnu: Add python-uncertainties. 
* gnu/packages/python-xyz.scm (python-uncertainties): New variable.
 2021-03-15 11:43:19 +01:00
Eric Bavier
620206b680
gnu: python-eventlet: Add missing dependencies. 
* gnu/packages/python-xyz.scm (python-eventlet)[propagated-inputs]: Add
python-dnspython and python-monotonic.
 2021-03-14 13:24:22 -05:00
Eric Bavier
af25357b7d
gnu: Add python-bidict. 
* gnu/packages/python-xyz.scm (python-bidict): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier
30f5381487
gnu: Add python-sortedcollections. 
* gnu/packages/python-xyz.scm (python-sortedcollections): New variable.
 2021-03-14 13:24:21 -05:00
Vinicius Monego
211c933077
gnu: Add python-pooch. 
* gnu/packages/python-xyz.scm (python-pooch): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 13:54:58 +01:00
LibreMiami
e5d526d758
gnu: Add python-click-default-group. 
* /gnu/packages/python-xyz.scm (python-click-default-group): New
variable.

Co-authored-by: Raghav Gururajan <rg@raghavgururajan.name>
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 12:16:22 +01:00
Ricardo Wurmus
ddc1cddded
gnu: snakemake: Update to 5.32.2. 
* gnu/packages/python-xyz.scm (snakemake): Update to 5.32.2.
[arguments]: Adjust patch in call-wrapper-not-wrapped-snakemake.
 2021-03-12 13:03:33 +01:00
Nicolas Goaziou
efed8e6cb9
gnu: python-pikepdf: Update to 2.8.0.post2. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.8.0.post2.
 2021-03-10 16:03:27 +01:00
Lars-Dominik Braun
548d0ddd7f
gnu: python-aiofiles: Update to 0.6.0. 
* gnu/packages/python-xyz.scm (python-aiofiles): Update to 0.6.0.
 2021-03-10 12:01:48 +01:00
Lars-Dominik Braun
d58a7b45cd
gnu: python-ujson: Update to 4.0.2. 
* gnu/packages/python-xyz.scm (python-ujson): Update to 4.0.2.
 2021-03-10 12:01:47 +01:00
Lars-Dominik Braun
38b0c64d7b
gnu: python-shouldbe: Remove. 
Unmaintained upstream and its only dependent (python-gssapi) dropped it.

* gnu/packages/patches/python-shouldbe-0.1.2-cpy3.8.patch: Remove.
* gnu/local.mk: Drop patch file.
* gnu/packages/python-xyz.scm (python-shouldbe): Remove.
 2021-03-10 12:01:41 +01:00
Lars-Dominik Braun
9a05af61ac
gnu: python-gssapi: Update to 1.6.12. 
* gnu/packages/python-xyz.scm (python-gssapi) [version]: Update to 1.6.12.
[arguments]: Tests have been fixed upstream, remove.
[native-inputs]: python-shouldbea is not required any more, remove.
 2021-03-10 12:01:35 +01:00
Efraim Flashner
c3fb753045
gnu: python-logwrap: Update to 8.2.0.post0. 
* gnu/packages/python-xyz.scm (python-logwrap): Update to 8.2.0.post0.
[arguments]: Disable tests. Replace 'check phase.
[propagated-inputs]: Remove python-six, python-typing.
[native-inputs]: Remove unzip, python-pytest-cov, python-pytest-runner.
Add python-setuptools-scm, python-toml, python-wheel.
[home-page]: Update to new upstream URI.
 2021-03-09 16:04:50 +02:00
Nicolas Goaziou
ba35d2b565
gnu: python-pikepdf: Update to 2.8.0.post1. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.8.0.post1.
 2021-03-07 17:45:50 +01:00
Léo Le Bouter
3218f02de4
gnu: Add python-listparser. 
* gnu/packages/python-xyz.scm (python-listparser): New variable.
 2021-03-06 00:14:32 +01:00
Léo Le Bouter
db5a70c81d
gnu: Add python-readability. 
* gnu/packages/python-xyz.scm (python-readability): New variable.
 2021-03-06 00:14:32 +01:00
Efraim Flashner
ab10e1086c
gnu: python-jedi: Allow test phase to be skipped. 
* gnu/packages/python-xyz.scm (python-jedi)[arguments]: Wrap custom
'check phase tests with check for tests? keyword.
 2021-03-04 16:19:19 +02:00
Léo Le Bouter
3aacc9f1da
gnu: python-pillow: Update to 8.1.1 [security fixes]. 
* gnu/packages/python-xyz.scm (python-pillow): Update to 8.1.1.
 2021-03-03 21:01:29 +01:00
Ellis Kenyő
3043974c36
gnu: Add python-jinja2-cli. 
* gnu/packages/python-xyz.scm (python-jinja2-cli): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-02 23:12:36 +01:00
Tobias Geerinckx-Rice
c48c69194f
gnu: python-matplotlib: Fix running under Wayland with GTK3. 
* gnu/packages/python-xyz.scm (python-matplotlib)[source]: Add patch.
* gnu/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-03-02 18:31:42 +01:00
Nicolas Goaziou
3fdb8fc0c4
gnu: python-pikepdf: Update to 2.8.0. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.8.0.
 2021-03-02 09:35:13 +01:00
Léo Le Bouter
0f4030c4c6
gnu: python-pysaml2: Update to 6.5.1 [fixes CVE-2021-21238, CVE-2021-21239]. 
* gnu/packages/python-xyz.scm (python-pysaml2): Update to 6.5.1.
 2021-03-01 05:14:12 +01:00
Nicolas Goaziou
e0c6592c68
gnu: python-rstr: Update home page. 
* gnu/packages/python-xyz.scm (python-rstr)[home-page]: Update URI.
 2021-02-28 11:38:51 +01:00
Nicolas Goaziou
155d26ac2f
gnu: python-qtconsole: Use HTTPS home page URI. 
* gnu/packages/python-xyz.scm (python-qtconsole)[home-page]: Use HTTPS URI.
 2021-02-28 11:36:46 +01:00
Nicolas Goaziou
c9370473cd
gnu: python-pylzma: Use HTTPS home page URI. 
* gnu/packages/python-xyz.scm (python-pylzma)[home-page]: Use HTTPS URI.
 2021-02-28 11:33:28 +01:00
Nicolas Goaziou
b6e90b3bed
gnu: python-pyev: Update home page. 
* gnu/packages/python-xyz.scm (python-pyev)[home-page]: Update URI.
 2021-02-28 11:32:03 +01:00
Nicolas Goaziou
c2424076fb
gnu: python-notebook: Use HTTPS home page URI. 
* gnu/packages/python-xyz.scm (python-notebook)[home-page]: Use HTTPS URI.
 2021-02-28 11:29:11 +01:00
Nicolas Goaziou
6c70a7104a
gnu: python-nbformat: Use HTTPS home page URI. 
* gnu/packages/python-xyz.scm (python-nbformat)[home-page]: Use HTTPS URI.
 2021-02-28 11:28:50 +01:00