Commit Graph

363 Commits

Author SHA1 Message Date
Ricardo Wurmus
c343c3bc1f
guix: Update to Bioconductor 3.13.
* guix/build-system/r.scm (bioconductor-uri): Update version.
* guix/import/cran.scm (%bioconductor-version): Update.
2021-06-05 09:12:39 +02:00
Guillaume Le Vaillant
2fa8fd4af5
build-system: asdf: Work around package-name->name+version bug.
This patch modifies how the name of the main Common Lisp system is extracted
from the full Guix package name to work around bug#48225 concerning the
'package-name->name+version' function.

Fixes <https://issues.guix.gnu.org/41437>.

* guix/build-system/asdf.scm (asdf-build): Fix 'systems' function.
* guix/build/asdf-build-system.scm (main-system-name): Fix it.
2021-05-08 13:42:38 +02:00
Maxim Cournoyer
a8b927a562
import: go: Add an option to use pinned versions.
The ability to pin versions is handy when having to deal to packages that
bootstrap themselves through a chain of former versions.  Not using pinned
versions in these case could introduce dependency cycles.

* guix/build-system/go.scm (guix)
(%go-version-rx): Rename to...
(%go-pseudo-version-rx): ... this.  Simplify the regular expression, which in
turns makes it more robust.
* guix/build-system/go.scm (go-version->git-ref): Adjust following the above
rename.
(go-pseudo-version?): New predicate.
(go-module-latest-version): Rename to ...
(go-module-version-string): ... this.  Rename goproxy-url argument to just
goproxy.  Add a VERSION keyword argument, update docstring and adjust to have
it used.
(go-module-available-versions): New procedure.
(%go.mod-require-directive-rx): Document regexp.
(parse-go.mod): Harmonize the way dependencies are recorded to a list of lists
rather than a list of pairs, as done for other importers.  Rewrite to directly pass
multiple values rather than a record object.  Filter the replaced modules in a
functional style.
(go-module->guix-package): Add docstring.
[version, pin-versions?]: New arguments.  Rename the GOPROXY-URL argument to
GOPROXY.  Adjust to the new returned value of fetch-go.mod, which is a string.
Fail when the provided version doesn't exist.  Return a list dependencies and
their versions when in pinned versions mode, else just the dependencies.
(go-module-recursive-import)[version, pin-versions?]: New arguments.
Honor the new arguments and guard against network errors.
* guix/scripts/import/go.scm (%default-options): Register a default value for
the goproxy argument.
(show-help): Document that a version can be specified.  Remove the --version
argument and add a --pin-versions argument.
(%options)[version]: Remove option.
[pin-versions]: Add option.
(guix-import-go): Adjust so the version provided from the module name is
honored, along the new pin-versions? argument.
* tests/go.scm: Adjust and add new tests.
2021-04-09 22:41:32 -04:00
Jelle Licht
f6c43c932a
gnu: Add node-lts.
* gnu/packages/node.scm (node-lts): New variable.
* guix/build-system/node.scm (default-node): Use it.
2021-04-02 18:04:24 +02:00
Jelle Licht
23ea84cdf0
build-system: Rewrite node build system.
* guix/build/node-build-system.scm: Rewrite it.
* guix/build-system/node.scm: Adjust accordingly.
* gnu/packages/node-xyz.scm (node-semver): Likewise.

Co-authored-by: Timothy Sample <samplet@ngyro.com>
2021-04-02 18:04:22 +02:00
Ludovic Courtès
813cddfa57
build-system/node: Remove unnecessary imports.
* guix/build-system/node.scm: Remove unnecessary imports.
2021-03-19 13:23:27 +01:00
Mark H Weaver
1a265842e6
gnu: Use PACKAGE/INHERIT in more places.
* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-17 03:58:10 -04:00
Efraim Flashner
4d00185d66
build-system/cargo: Propagate crates across builds.
* guix/build-system/cargo.scm (cargo-build): Add cargo-package-flags,
install-source flags.
* guix/build/cargo-build-system.scm (unpack-rust-crates, package): New
procedures.
(install): Also install crate sources.
(%standard-phases): Add new phases.
* doc/guix.texi (Packaging-guidelines)[Rust Crates]: Adjust to changes
in the cargo-build-system.
2021-03-14 19:52:44 +02:00
Katherine Cox-Buday
02e2e093e8
import: Add Go importer.
This patch adds a 'guix import go' command.

* doc/guix.texi (Requirements): Mention Guile-Lib dependency.
(Invoking guix import): Document 'guix import go'.
* gnu/packages/package-management.scm (guix)[inputs, propagated-inputs]:
Add GUILE-LIB.
* guix/self.scm (compiled-guix)[guile-lib]: New variable.
[dependencies]: Add it.
(specification->package): Add "guile-lib".
* guix/build-system/go.scm (go-version->git-ref): New procedure.
* guix/import/go.scm, guix/scripts/import/go.scm, tests/go.scm: New files.
* guix/scripts/import.scm: Declare subcommand guix import go
* po/guix/POTFILES.in: Add 'guix/scripts/import/go.scm'.
* Makefile.am (MODULES): Add 'guix/import/go.scm' and
'guix/scripts/import/go.scm'.
(SCM_TESTS): Add 'tests/go.scm'.

Co-Authored-By: Helio Machado <0x2b3bfa0@gmail.com>
Co-Authored-By: Francois Joulaud <francois.joulaud@radiofrance.com>
Co-Authored-By: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Co-Authored-by: Ludovic Courtès <ludo@gnu.org>
2021-03-10 18:01:48 +01:00
Leo Prikler
e1bdab4f0f
build-system: Add renpy-build-system.
* guix/build/renpy-build-system.scm: New file.
* guix/build-system/renpy.scm: New file.
* Makefile.am (MODULES): Add them here.
* doc/guix.texi (Build Systems): Document renpy-build-system.
2021-02-07 15:17:55 +01:00
nixo
ba093a6d27
build-system/julia: Don't rely on file name to set module name.
* guix/build/julia-build-system.scm (project.toml->name): New procedure.
  (precompile, check, julia-build): Accept new key argument #:julia-package-name.
* guix/build-system/julia.scm (julia-build): ... add it.
* doc/guix.texi (julia-build-system): Update julia-package-name accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-30 15:36:56 +01:00
nixo
a23b384f3f
build-system/julia: Enable tests.
* guix/build-system/julia.scm (julia-build): Set tests? default to #t.
* guix/build/julia-build-system.scm (check): Respect tests? and fix julia
  invocation.
  (%standard-phases): Add check phase after install.
* doc/guix.texi (julia-build-system): Update accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-30 15:36:56 +01:00
Roel Janssen
0a79b24506
import: cran: Update the Bioconductor version to 3.12.
* guix/import/cran.scm (%bioconductor-version): Set to 3.12.
* guix/build-system/r.scm (bioconductor-uri):  Update to 3.12.
2020-12-09 12:12:19 +01:00
raingloom
64f032d73f
build-system: Add chicken-build-system.
* guix/build-system/chicken.scm: New file.
* guix/build/chicken-build-system.scm: New file.
* Makefile.am: Add them.
* doc/guix.texi: Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-03 16:18:33 +01:00
Marius Bakke
a9a0d34874
Merge branch 'master' into staging 2020-11-11 00:02:32 +01:00
Julien Lepiller
6ed2741a35
guix: ocaml: Add package-with-ocaml4.09.
* guix/build-system/ocaml.scm (package-with-ocaml4.09)
(strip-ocaml4.09-variant): New variables.
* gnu/packages/ocaml.scm (ocaml4.09-result, ocaml4.09-csexp)
(ocaml4.09-dune-configurator, ocaml4.09-dune): New variables.
2020-11-10 16:02:59 +01:00
zimoun
19d42e0e23
build-system/haskell: Disable parallel builds.
Fixes <https://bugs.gnu.org/43843>.

* guix/build-system/haskell.scm (haskell-build): Turn off PARALLEL-BUILD? by
default.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-10-19 00:07:37 +02:00
Guillaume Le Vaillant
87c079d9b5
Merge branch 'master' into staging 2020-10-05 14:17:25 +02:00
Guillaume Le Vaillant
952fafb2a3
build-system: asdf: Read all .asd files if no #:asd-files specified.
* guix/build-system/asdf.scm (asdf-build): Remove the 'files' variable.
* guix/build/asd-build-system.scm (find-asd-files): New variable.
  (build, check): Use it.
2020-09-15 14:36:24 +02:00
Danny Milosavljevic
2be5c2652a
build-system: linux-module: Delete some huge items that we probably don't need.
* guix/build-system/linux-module.scm (make-linux-module-builder): Delete
some huge items that we probably don't need.
2020-09-14 10:15:43 +02:00
Guillaume Le Vaillant
a13f45c150
build-system: asdf: Switch from bundles to regular compilation.
* gnu/packages/lisp.scm (sbcl, ecl)[native-search-paths]: Add
  'XDG_CONFIG_DIRS'.
* guix/build-system/asdf.scm (asdf-build): Replace 'asd-file' and
  'asd-system-name' keywords by 'asd-files' and 'asd-systems'.
* guix/build/asdf-build-system.scm (%object-prefix,
  %lisp-source-install-prefix): Update variables.
  (install): Update variable.
  (main-system-name): New variable.
  (copy-source): Replace 'asd-file' and 'asd-system-name' keywords by
  'asd-files' and 'asd-systems'.
  (configure): New variable.
  (build, check): Replace 'asd-file' and 'asd-system-name' keywords by
  'asd-files' and 'asd-systems'.
  (create-asd-file, symlink-asd-files): Remove variables.
  (create-asdf-configuration): New variable.
  (cleanup-files): Update variable.
  (%standard-phases): Remove 'create-asd-file' and 'symlink-asd-files' phases.
  Add 'configure' and 'create-asdf-configuration' phases.
* guix/build/lisp-utils.scm (%bundle-install-prefix, normalize-dependency,
  inputs->asd-file-map, asdf-load-all, compile-system): Remove variables.
  (compile-systems): New variable.
  (system-dependencies, compiled-system, generate-system-definition): Remove
  variable.
  (test-system): Replace 'asd-file' parameter by 'asd-files'.
  (generate-executable-for-system): Update variable.
  (generate-dependency-links, make-asd-file, bundle-asd-file): Remove
  variables.
  (make-asdf-configuration): New variable.
  (build-program, build-image): Set 'XDG_CONFIG_DIRS'.
  (generate-executable): Update variable.
2020-09-12 11:18:56 +02:00
Timothy Sample
54a5fd0791
build-system/haskell: Add 'extra-directories' keyword.
See <https://bugs.gnu.org/39309>.

* guix/build-system/haskell.scm (lower): Include the transitive
propagated inputs of 'extra-directories' inputs.
(haskell-build): Add the 'extra-directories' keyword and pass it through
to the builder.
* guix/build/haskell-build-system.scm (configure): Use it to select
which inputs get passed via 'extra-include-dirs' and 'extra-lib-dirs' to
Cabal.
* gnu/packages/haskell-xyz.scm (ghc-alsa-core, ghc-hmatrix,
ghc-hmatrix-gsl, ghc-hslua, ghc-iwlib, ghc-libyaml, ghc-ncurses,
ghc-openglraw, ghc-x11, ghc-x11-xft, ghc-zlib): Set 'extra-directories'.
* gnu/packages/haskell-crypto.scm (ghc-digest, ghc-hsopenssl): Likewise.
2020-08-13 16:44:52 +02:00
Ricardo Wurmus
718dc7d4a5
build-system/haskell: Add default output "static".
* guix/build-system/haskell.scm (lower): Add OUTPUTS keyword and add the
"static" output in the common case.
(haskell-build): Set the default value for the OUTPUTS keyword to include the
"static" output.
* guix/build/haskell-build-system.scm (install): Move static libraries to the
"static" output if it exists.
2020-08-12 14:45:48 +02:00
Ricardo Wurmus
67cb9fa235
build-system/haskell: Support parallel builds.
* guix/build-system/haskell.scm (haskell-build): Add keyword PARALLEL-BUILD?
and pass it on to the builder.
* guix/build/haskell-build-system.scm (build): Accept keyword PARALLEL-BUILD?
and pass the number of parallel jobs to GHC.
2020-08-12 14:45:48 +02:00
Morgan Smith
d98e0a27a7
build-system/emacs: Allow usage of #:parallel-tests? key
* guix/build-system/emacs.scm (emacs-build): Pass parallel-tests? to
  builder.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-08-09 22:12:40 +02:00
Christopher Baines
22b3a95f6e
build-system/maven: Make default-maven-plugins a procedure.
This allows compiling the module without the (gnu packages maven) module being
available.

* guix/build-system/maven.scm (%default-maven-plugins): Rename to
default-maven-plugins, and convert to a procedure.
* doc/guix.texi (maven-build-system): Update.
2020-07-17 09:45:19 +01:00
Julien Lepiller
55b90c9053
guix: Add maven-build-system.
* guix/build-system/maven.scm: New file.
* guix/build/maven-build-system.scm: New file.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document the maven build system.
2020-07-17 04:21:22 +02:00
Julien Lepiller
3d3bc413b4
guix: java-utils: Add Maven-related phases.
* guix/build/maven/java.scm: New file.
* guix/build/maven/plugin.scm: New file.
* guix/build/maven/pom.scm: New file.
* Makefile.am (MODULES): Add them.
* guix/build-system/ant.scm (%ant-build-system-modules): Add them to the
build side.
* guix/build/java-utils.scm (generate-plugin.xml, install-pom-file)
(install-from-pom): New procedures.
2020-07-17 04:10:28 +02:00
zimoun
b032d14ebd
build-system/r: bioconductor-uri: Fix archive URL.
* guix/build-system/r.scm (bioconductor-uri): Fix archive URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-30 00:18:27 +02:00
Ludovic Courtès
50e7e6a065
build-system/gnu: Cross builds properly handle #:allowed-references & co.
Fixes <https://bugs.gnu.org/41775>.

* guix/build-system/gnu.scm (gnu-cross-build)[canonicalize-reference]:
Pass TARGET and SYSTEM to 'package-cross-derivation'.
2020-06-20 23:35:58 +02:00
Ludovic Courtès
7488d70c55
build-system/gnu: Simplify 'dist-package'.
* guix/build-system/gnu.scm (dist-package): Use default keyword
arguments in 'substitute-keyword-arguments'.
2020-06-17 19:32:43 +02:00
Ludovic Courtès
8cca3f939a
build-system/gnu: Adjust 'dist-package' to current 'autoconf-wrapper' API.
This is a followup to 464f544739.

* guix/build-system/gnu.scm (dist-package): Do not call 'autoconf-wrapper'.
2020-06-17 19:32:43 +02:00
Efraim Flashner
3646a44a14
build-system: cmake: Add substitutable keyword.
* guix/build-system/cmake.scm (cmake-build, cmake-cross-build): Add
substitutable keyword.
2020-06-16 16:40:27 +03:00
Marius Bakke
8ab70bae52
Merge branch 'staging' 2020-06-13 22:52:25 +02:00
Ricardo Wurmus
8e518d4802
guix: Update to Bioconductor 3.11.
* guix/build-system/r.scm (bioconductor-uri): Use new URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.11.
2020-06-13 01:19:38 +02:00
Marius Bakke
7ce1b5e7b7
Merge branch 'master' into staging 2020-06-06 21:25:43 +02:00
Danny Milosavljevic
f51fd97ec5
build-system: linux-module: Allow passing #:make-flags argument.
* guix/build-system/linux-module.scm (linux-module-build): Add #:make-flags.
(linux-module-build-cross): Add #:make-flags.
* guix/build/linux-module-build-system.scm (install): Pass make-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-06-02 14:22:32 +02:00
Marius Bakke
aa13c5657d
Merge branch 'master' into staging 2020-05-26 22:34:46 +02:00
Marius Bakke
9edb3f66fd
Merge branch 'master' into staging 2020-05-26 22:30:51 +02:00
Pierre Neidhardt
c3f1f09586
build: asdf-build-system: Use SBCL source in CL packages.
* guix/build/asdf-build-system.scm (copy-files-to-output): Don't attempt to
  reset timestamps on files without write access.
  (install): When parent SBCL package is in the inputs, use its source.  This
  way we get possibly patched sources in CL packages as well (e.g. for FFI).
  This is also useful for sources that generate files on load-op, like cl-unicode.

* guix/build-system/asdf.scm (package-with-build-system): Forward the SBCL
  parent as a native input so that it can be used in the above install phase.
2020-05-21 11:53:06 +02:00
Alex Sassmannshausen
70e33ec795
build-system/guile: Expose #:scheme-file-regexp.
* guix/build-system/guile.scm (%scheme-file-regexp): New variable.
  (guile-build): Accept #:scheme-file-regexp and pass it on to builder.
2020-05-18 15:37:23 +02:00
Jakub Kądziołka
4035c3e352
Merge branch 'master' into staging 2020-04-29 11:08:42 +02:00
Jakub Kądziołka
3f3c9fdcd8
build-system/go: Allow providing additional build flags
* guix/build-system/go.scm (build-flags): New argument.
* guix/build/go-build-system.scm (build): Use apply to pass the
  additional arguments to invoke.
2020-04-08 12:24:42 +02:00
Marius Bakke
ae0badf5bb
Merge branch 'master' into core-updates
Conflicts:
	gnu/packages/admin.scm
	gnu/packages/commencement.scm
	gnu/packages/guile.scm
	gnu/packages/linux.scm
	gnu/packages/package-management.scm
	gnu/packages/pulseaudio.scm
	gnu/packages/web.scm
2020-03-30 12:17:33 +02:00
Ludovic Courtès
5a17b9b673
build-system/gnu: Optimize the package graph.
With this change, the output of:

  guix graph -e '(@@ (gnu packages commencement) coreutils-final)' |grep 'label = ' | wc -l

drops from 76 nodes to 68 nodes, and the "add-data-to-store-cache" hit
rate for:

  guix build libreoffice -d --no-grafts

drops from 3.9% to 2.6%.

* guix/build-system/gnu.scm (package-with-explicit-inputs*)[cut?]:
Adjust condition to exclude packages with build systems other than
GNU-BUILD-SYSTEM, such as 'ld-wrapper-boot3'.
2020-03-29 23:14:28 +02:00
Jakub Kądziołka
44fb8cf841
Merge branch 'master' into staging 2020-03-29 00:38:13 +01:00
Marius Bakke
18af687037
Merge branch 'master' into core-updates
Conflicts:
	gnu/packages/icu4c.scm
	gnu/packages/man.scm
	gnu/packages/python-xyz.scm
	guix/scripts/environment.scm
	guix/scripts/pack.scm
	guix/scripts/package.scm
	guix/scripts/pull.scm
	guix/store.scm
2020-03-27 00:12:15 +01:00
Jakub Kądziołka
927c251846
cargo-build-system: Accept a #:features argument
* guix/build/cargo-build-system.scm (build, install): Pass the features
  to cargo.
  (check): Remove indirection layer for consistency with build and
  install.
* guix/build-system/cargo.scm (cargo-build): New argument; pass it into
  the builder.
* gnu/packages/rust-apps.scm (ripgrep): Use the new argument instead of
  a custom phase.
2020-03-23 19:30:38 +01:00
Mathieu Othacehe
c086c5af1c
build-system: linux-module: Fix cross compilation.
* guix/build-system/linux-module.scm (default-kmod, default-gcc): Delete
procedures.
(system->arch): New procedure.
(make-linux-module-builder)[native-inputs]: Move linux...
[inputs]: ...to here.
(linux-module-build-cross): New procedure.
(linux-module-build): Add TARGET.  Pass TARGET and ARCH to build side.
(lower): Allow cross-compilation.  Move "linux" and "linux-module-builder"
to host-inputs.  Add target-inputs.  Call linux-module-build-cross if
TARGET is set, linux-module-build otherwise.
* guix/build/linux-module-build-system.scm (configure): Add ARCH argument.
(linux-module-build): Adjust comment.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-22 13:20:07 +01:00
Marius Bakke
c4d769d359
Merge branch 'master' into core-updates 2020-03-18 19:41:08 +01:00