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60 Commits

Author SHA1 Message Date
Federico Beffa
01480b9e1c gnu: atlas: Remove MIPS from 'supported-systems'. 
* gnu/packages/maths.scm (atlas): Drop support for "mips64el-linux".
 2014-12-08 09:54:34 +01:00
Federico Beffa
af89a66735 gnu: atlas: Try to fix build on MIPS. 
* gnu/packages/maths.scm (atlas): Add MIPS specific configure flags.
 2014-11-23 15:37:29 +01:00
Ludovic Courtès
f15615b119 gnu: atlas: Make it non-substitutable. 
Suggested by Federico Beffa <beffa@ieee.org>.

* gnu/packages/maths.scm (atlas)[arguments]: Pass #:substitutable? #f.
  [description]: Adjust accordingly.
 2014-10-28 10:17:55 +01:00
Eric Bavier
35b9e4232c gnu: Some cleanup based on lint checkers. 
* gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm,
  gnu/packages/apr.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm,
  gnu/packages/base.scm, gnu/packages/calcurse.scm, gnu/packages/cdrom.scm,
  gnu/packages/check.scm, gnu/packages/compression.scm, gnu/packages/cook.scm,
  gnu/packages/crypto.scm, gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
  gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm,
  gnu/packages/doxygen.scm, gnu/packages/dwm.scm, gnu/packages/elf.scm,
  gnu/packages/emacs.scm, gnu/packages/feh.scm, gnu/packages/file.scm,
  gnu/packages/fish.scm, gnu/packages/flex.scm, gnu/packages/fltk.scm,
  gnu/packages/fontutils.scm, gnu/packages/games.scm, gnu/packages/gcal.scm,
  gnu/packages/gcc.scm, gnu/packages/geeqie.scm, gnu/packages/ghostscript.scm,
  gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
  gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
  gnu/packages/gperf.scm, gnu/packages/grub.scm, gnu/packages/gsasl.scm,
  gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm,
  gnu/packages/hurd.scm, gnu/packages/icu4c.scm, gnu/packages/image.scm,
  gnu/packages/imagemagick.scm, gnu/packages/irssi.scm, gnu/packages/kde.scm,
  gnu/packages/libdaemon.scm, gnu/packages/libevent.scm,
  gnu/packages/libidn.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm,
  gnu/packages/lout.scm, gnu/packages/lsh.scm, gnu/packages/lsof.scm,
  gnu/packages/lua.scm, gnu/packages/maths.scm, gnu/packages/mcrypt.scm,
  gnu/packages/mp3.scm, gnu/packages/netpbm.scm, gnu/packages/noweb.scm,
  gnu/packages/ocaml.scm, gnu/packages/openssl.scm, gnu/packages/pcre.scm,
  gnu/packages/pdf.scm, gnu/packages/pkg-config.scm,
  gnu/packages/pretty-print.scm, gnu/packages/python.scm, gnu/packages/qt.scm,
  gnu/packages/rsync.scm, gnu/packages/scheme.scm, gnu/packages/scrot.scm,
  gnu/packages/sdl.scm, gnu/packages/skribilo.scm, gnu/packages/ssh.scm,
  gnu/packages/stalonetray.scm, gnu/packages/tcl.scm, gnu/packages/tcsh.scm,
  gnu/packages/telephony.scm, gnu/packages/texlive.scm, gnu/packages/tor.scm,
  gnu/packages/valgrind.scm, gnu/packages/version-control.scm,
  gnu/packages/vim.scm, gnu/packages/vpn.scm, gnu/packages/w3m.scm,
  gnu/packages/web.scm, gnu/packages/wordnet.scm, gnu/packages/xiph.scm,
  gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/packages/zile.scm,
  gnu/packages/zip.scm, gnu/packages/zsh.scm [synopsis, description]: Adjust
  according to lint checkers.
* gnu/packages/fltk.scm (fltk)[source]: Wrap long line in uri.
* /gnu/packages/xiph.scm (libogg, libtheora, vorbis-tools)[source]: Same.
 2014-10-26 13:03:53 -05:00
Federico Beffa
ec322be248 gnu: Add ATLAS. 
* gnu/packages/maths.scm (atlas): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-10-26 15:16:06 +01:00
John Darrington
3dcd78109c gnu: pspp: Upgrade to 0.8.4. 
* gnu/packages/maths.scm (pspp): Upgrade to 0.8.4.
 2014-10-03 19:52:50 +02:00
Mathieu Lirzin
182d6311c2 gnu: Add dionysus. 
* gnu/packages/maths.scm (dionysus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-29 00:16:28 +02:00
Federico Beffa
f36afe4d05 gnu: maxima: Install .el files in the right place, and help find Gnuplot. 
* gnu/packages/maths.scm (maxima): Remove Tcl from 'inputs'.  Add
  'post-install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-27 11:22:58 +02:00
Federico Beffa
df354a771d gnu: maxima: Update to 5.34.1 and add dependencies. 
* gnu/packages/maths.scm (maxima): Update to 5.34.1 which fixes a bug in
  the plotting capabilities present in the previous version.  Add Gnuplot
  and Tcl/Tk to 'inputs'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-24 09:35:44 +02:00
Mark H Weaver
b5b73a8269 Use #:prefix instead of #:renamer with 'symbol-prefix-proc'. 
* gnu/packages/abiword.scm, gnu/packages/admin.scm, gnu/packages/aidc.scm,
  gnu/packages/backup.scm, gnu/packages/bittorrent.scm,
  gnu/packages/boost.scm, gnu/packages/compression.scm,
  gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
  gnu/packages/cyrus-sasl.scm, gnu/packages/dc.scm, gnu/packages/emacs.scm,
  gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/geeqie.scm,
  gnu/packages/ghostscript.scm, gnu/packages/gimp.scm,
  gnu/packages/gkrellm.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
  gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
  gnu/packages/gnutls.scm, gnu/packages/gnuzilla.scm, gnu/packages/gsasl.scm,
  gnu/packages/gtk.scm, gnu/packages/gv.scm, gnu/packages/image.scm,
  gnu/packages/indent.scm, gnu/packages/inkscape.scm,
  gnu/packages/lesstif.scm, gnu/packages/links.scm, gnu/packages/lisp.scm,
  gnu/packages/lsh.scm, gnu/packages/lsof.scm, gnu/packages/maths.scm,
  gnu/packages/mp3.scm, gnu/packages/openssl.scm, gnu/packages/ots.scm,
  gnu/packages/pciutils.scm, gnu/packages/pcre.scm, gnu/packages/pdf.scm,
  gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/slim.scm,
  gnu/packages/ssh.scm, gnu/packages/texlive.scm, gnu/packages/vim.scm,
  gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wv.scm,
  gnu/packages/xiph.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm,
  gnu/packages/yasm.scm, gnu/packages/zip.scm,
  guix/build/cmake-build-system.scm, guix/build/perl-build-system.scm,
  guix/build/python-build-system.scm, guix/download.scm: Replaces uses of
  #:renamer and 'symbol-prefix-proc' with #:prefix.
 2014-09-23 18:52:29 -04:00
Alex Kost
516e93f8a6 gnu: Fix typos. 
* gnu/packages/cdrom.scm (cdparanoia): Double space in description.
* gnu/packages/maths.scm (hdf5): Double space in synopsis.
 2014-09-19 15:31:19 +04:00
Ludovic Courtès
9e771e3bb6 gnu: Adjust synopses as recommended by 'guix lint'. 
Remove leading articles and trailing periods in package synopses.
 2014-09-13 15:50:30 +02:00
Ludovic Courtès
c5779c931b gnu: Synchronize GNU package descriptions with upstream. 
These are mostly two-space-after-end-of-sentence-period changes
resulting from commit 3a09e1d2.
 2014-09-13 15:36:07 +02:00
Andreas Enge
66fdf54587 gnu: glpk: Update to 4.55. 
* gnu/packages/maths.scm (glpk): Update to 4.55.
 2014-09-11 16:43:08 +02:00
Ludovic Courtès
c3cf9d36e4 Merge branch 'bug-17853' 2014-07-13 23:44:55 +02:00
John Darrington
8731e52749 gnu: Add maxima. 
* gnu/packages/maths.scm (maxima): New variable.
 2014-07-05 16:16:03 +02:00
Eric Bavier
221ed17a58 gnu: Adjust yet more packages to GLib "bin" split. 
* gnu/packages/maths.scm (pspp): Add glib:bin to 'native-inputs'.
* gnu/packages/gnome.scm (gconf, gnome-vfs, libgnome, libgnomeui,
  libbonoboui): Likewise.
  (libbonobo, libgnomecanvas, libgnomeprint): Comment on why glib:bin.
* gnu/packages/gtk.scm (gtksourceview): Likewise.
 2014-07-02 13:32:59 -05:00
Andreas Enge
93c3de921a gnu: hdf5: Fix source download location. 
* gnu/packages/maths.scm (hdf5): Use "release" directory and not the "current"
    directory for the source, which does not break on new upstream releases.
 2014-05-28 16:04:08 +02:00
John Darrington
5698b8b82c gnu: Add gsegrafix and dependent libraries. 
* gnu/packages/math.scm (gsegrafix): New variable.
* gnu/packages/gtk.scm (pangox-compat): New variable.
* gnu/packages/gnome.scm (libidl, orbit2, libbonobo, gconf, gnome-mime-data,
  gnome-vfs, libgnome, libart-lgpl, libgnomecanvas, libgnomeui, libglade,
  libgnomeprint, libgnomeprintui, libbonoboui): New variables.
 2014-05-26 18:19:55 +02:00
Eric Bavier
16ecf3ff4a gnu: Edit synopses of petsc packages. 
* gnu/packages/maths.scm (petsc) [synopsis]: Shorten.
  (petsc-complex,petsc-openmpi,petsc-complex-openmpi) [synopsis]:
  Repeat synopsis from petsc package with extensions.  [description]: Remove.
 2014-05-20 09:53:19 -05:00
Eric Bavier
a54aefead6 gnu: Add superlu-dist package. 
* gnu/packages/maths.scm (superlu-dist): New variable.
* gnu/packages/patches/superlu-dist-scotchmetis.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-19 00:15:11 -05:00
Eric Bavier
6acb4adb34 gnu: Add pt-scotch package. 
* gnu/packages/maths.scm (pt-scotch): New variable.
 2014-05-19 00:15:11 -05:00
Eric Bavier
f8ed036a31 gnu: Add scotch package. 
* gnu/packages/maths.scm (scotch): New variable.
* gnu/packages/patches/scotch-test-threading.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-19 00:15:11 -05:00
John Darrington
7e0c23fb3e gnu: pspp: Upgrade to 0.8.3 
* gnu/packages/maths.scm (pspp): Update to 0.8.3.
 2014-05-11 13:42:49 +02:00
Eric Bavier
d8c7eeb996 gnu: Add petsc-openmpi. 
* gnu/packages/maths.scm (petsc-openmpi): New variable.
  (petsc-complex-openmpi): New variable.
 2014-05-08 12:42:17 -05:00
Eric Bavier
10b11968c8 gnu: petsc: Clean some more leaked chroot references 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub some
  config-generated header files before build.  Only remove files if
  they exist.
 2014-05-08 12:42:17 -05:00
Ludovic Courtès
0e2672aee3 gnu: Add missing import in (gnu packages maths). 
* gnu/packages/maths.scm: Use (guix utils), which was needed since
  b9100e2f.
 2014-05-04 11:15:30 +02:00
Eric Bavier
f5d5a346db gnu: Add missing copyright line 
* gnu/packages/maths.scm: Add copyright line missing from 3de01d3.
 2014-05-02 14:25:17 -05:00
Eric Bavier
f258212df5 gnu: petsc: Add input superlu. 
* gnu/packages/maths.scm (petsc): Configure with superlu support.
 2014-05-02 14:25:17 -05:00
Eric Bavier
183e44ae44 gnu: Add superlu 
* gnu/packages/maths.scm (superlu): New variable
 2014-05-02 14:25:17 -05:00
Eric Bavier
b9100e2f11 gnu: Add petsc 
* gnu/packages/maths.scm (petsc): New variable.
  (petsc-complex): New variable.
* gnu/packages/patches/petsc-fix-threadcomm.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-01 15:27:30 -05:00
Eric Bavier
edf684ef99 gnu: gmsh: Fix typos 
* gnu/packages/maths.scm (gmsh): Fix typo and space aftern
  end-of-sentence.
 2014-04-30 14:56:52 -05:00
Eric Bavier
3de01d3fa1 gnu: Add gmsh 
* gnu/packages/maths.scm (gmsh): New variable
 2014-04-30 11:39:31 -05:00
Andreas Enge
06ed59825e guix: cmake: Add input and package libraries to the rpath, and adapt package 
definitions accordingly.

* guix/build/cmake-build-system.scm (configure): Add flags.
* gnu/packages/maths.scm (lapack): Drop special code.
* gnu/packages/ssh.scm (libssh): Drop special code.
* gnu/packages/slim.scm (slim): Drop special code and enable shared library.

Co-authored-by: Eric Bavier <bavier@member.fsf.org>
 2014-04-27 11:35:26 +02:00
Eric Bavier
57e544e8f7 gnu: lapack: Augment library rpath 
* gnu/packages/maths.scm (lapack) [arguments]: New post-installation
  phase to augment the rpath of installed libraries.
 2014-04-08 23:10:42 -05:00
Eric Bavier
8de3a57821 gnu: lapack: Build shared libraries 
* gnu/packages/maths.scm (lapack) [arguments]: Add -DBUILD_SHARED_LIBS to
  #:configure-flags
 2014-04-07 14:44:57 -05:00
Ludovic Courtès
574e86f9cf gnu: Synchronize synopses and descriptions with the Womb. 
* gnu/packages/gnunet.scm (gnunet): Synchronize description and synopsis
  with upstream.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/grub.scm (grub): Likewise.
* gnu/packages/pretty-print.scm (enscript): Likewise.
 2014-04-06 21:18:13 +02:00
Andreas Enge
983815c8b9 gnu: units: Upgrade to 2.11. 
* gnu/packages/maths.scm (units): Upgrade to 2.11.
 2014-04-03 20:54:16 +02:00
Andreas Enge
1f1c0aff26 gnu: glpk: Upgrade to 4.54. 
* gnu/packages/maths.scm (glpk): Upgrade to 4.54.
 2014-04-03 20:18:25 +02:00
Eric Bavier
d4bf49b140 gnu: Remove unused lambda arguments and prefer separate phases over 
augmented phases.

* gnu/packages/compression.scm (sharutils) [arguments]: Remove unused
  lambda args.
* gnu/packages/gl.scm (mesa) [arguments]: Same
* gnu/packages/fltk.scm [arguments]: Same.  Substitute const check
  phase with #:tests? #f.  Add pre-configure phase.
* gnu/packages/ghostscript.scm (ghostscript) [arguments]: Put makefile
  patches in separate phase.  Put so steps oinseparate phases.
* gnu/packages/glib.scm (gobject-introspection) [arguments]: Remove
  unused lambda args.  Put patches in pre-configure phase.
* gnu/packages/gnupg.scm (gnupg) [arguments]: Put patch in
  pre-configure phase.
  (pius) [arguments]: Delete const #t configure and build phases.
  (signing-party) [arguments]: Factor patches into post-unpack phase.
  (paperkey) [arguments]: Remove unused lambda args.  Factor out
  patches into pre-check phase.
* gnu/packages/icu4c.scm [arguments]: Change source dir after standard
  unpack phase.  Factor configure patches into pre-configure phase.
* gnu/packages/lsof.scm [arguments]: Remove unused lambda args.
  Remove unnecessary apply.
* gnu/packages/lvm.scm (lvm2) [arguments]: Factor out patches into
  pre-configure phase.
* gnu/packages/libtiff.scm [arguments]: Same
* gnu/packages/maths.scm (hdf5) [arguments]: Same
* gnu/packages/gtk.scm (gtk+-2) [arguments]: Same
* gnu/packages/mp3.scm (libmad) [arguments]: Same
  (id3lib) [arguments]: Same
* gnu/packages/python.scm (python-2) [arguments]: Same
* gnu/packages/texlive.scm (texlive) [arguments]: Same
* gnu/packages/pretty-print.scm (a2ps) [arguments]: Same
  (trueprint) [arguments]: Same
  (source-highlight) [arguments]: Same.  Remove unused lambda args.
* gnu/packages/netpbm.scm [arguments]: Remove unused lambda args.
  Factor out test patches into pre-check phase.  Condense calls to
  substitute*
* gnu/packages/openldap.scm [arguments]: Factor out libtool copy into
  post-configure phases. [synopsis] Remove package name.
* gnu/packages/ssh.scm (openssh) [arguments]: Factor out patches into
  separate phases.
* gnu/packages/tcsh.scm [arguments]: Factor out test patches into
  pre-check phase.
* gnu/packages/version-control.scm (git) [arguments]: Factor out
  patches into post-configure phase.
* gnu/packages/vim.scm [arguments]: Same. [synopsis] Remove package
  name.
* gnu/packages/vpn.scm (openconnect) [arguments]: Put configure flags
  in #:configure-flags
 2014-03-31 10:34:17 -05:00
John Darrington
7ee3f1a208 gnu: Add hdf5. 
* gnu/packages/maths.scm (hdf5): New variable.
* gnu/packages/maths.scm (octave): New input hdf5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-02-16 23:35:37 +01:00
John Darrington
668c06acfc gnu: Add GNU Octave. 
* gnu/packages/maths.scm (octave): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-30 22:00:55 +01:00
John Darrington
73fed4f868 gnu: Add gnuplot 
* gnu/packages/maths.scm (gnuplot): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-26 21:16:55 +01:00
Andreas Enge
566146abba gnu: lapack: Update to 3.5.0. 
* gnu/packages/maths.scm (lapack): Update to 3.5.0.
 2014-01-26 13:04:03 +01:00
John Darrington
e7d6f7bfa0 gnu: pspp: Upgrade to 0.8.2 
* gnu/packages/maths.scm (pspp): Update to 0.8.2.
* gnu/packages/patches/pspp-tests.patch: Deleted.
* gnu-system.am: Removed pspp-tests.patch from the manifest.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-15 21:27:41 +01:00
John Darrington
e6a5ce8e67 gnu: pspp: Enabled build of the gui 
* gnu/packages/math.scm (pspp): Removed the --without-gui flag
and added the necessary inputs to build it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2013-12-02 13:51:02 +01:00
Ludovic Courtès
79c311b81c gnu: Synchronize descriptions with 'gnumaint'. 2013-12-01 22:33:23 +01:00
Ludovic Courtès
1dba64079c gnu: gettext: Rename binding to 'gnu-gettext'. 
* gnu/packages/gettext.scm (gettext): Rename to...
  (gnu-gettext): ... this.  This is used to work around the circular
  dependency introduced in commit c42a4b7, which users with a #:renamer
  cannot cope with.
* gnu/packages/acl.scm, gnu/packages/attr.scm, gnu/packages/cdrom.scm,
  gnu/packages/fdisk.scm, gnu/packages/gkrellm.scm, gnu/packages/glib.scm,
  gnu/packages/gnunet.scm, gnu/packages/grub.scm, gnu/packages/linux.scm,
  gnu/packages/maths.scm, gnu/packages/nano.scm, gnu/packages/parted.scm,
  gnu/packages/system.scm, gnu/packages/version-control.scm,
  gnu/packages/vpn.scm, gnu/packages/w3m.scm, gnu/packages/wget.scm:
  Adjust accordingly.
 2013-11-20 22:12:49 +01:00
Andreas Enge
f392980041 gnu: pspp: Add input cairo. 
* gnu/packages/maths.scm (pspp): Add cairo and further necessary inputs.
* gnu/packages/patches/pspp-tests.patch: New file, thanks to
  John Darrington <john@darrington.wattle.id.au>.
* gnu-system.am (dist_patch_DATA): Register patch.
 2013-11-18 21:12:27 +01:00
Ludovic Courtès
6a9957545c gnu: lapack: Use origin snippet to remove the non-free files. 
* gnu/packages/maths.scm (lapack): Add 'snippet' field with contents of
  former 'remove-non-free-files' phase; remove that phase.
 2013-11-07 23:07:45 +01:00