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11 Commits

Author SHA1 Message Date
Eric Bavier
38f0a2bade gnu: openmpi: Upgrade to 1.8.5. 
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
  [native-inputs]: Add perl.
  [arguments]: Add configure flags for thread support.
 2015-06-29 15:34:36 -05:00
Eric Bavier
579f5c8a58 gnu: hwloc: Move numactl to inputs. 
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
  [inputs]: ...to here.
  [arguments]: New 'refine-libnuma' phase.
 2015-06-29 15:34:36 -05:00
Eric Bavier
ce7d9c989d gnu: hwloc: Upgrade to 1.10.1. 
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
  [source]: Use patch.
  [propagated-inputs]: Remove libpci.
  [inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-06-29 15:34:36 -05:00
Ricardo Wurmus
19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Ian Denhardt
29a7c98a42 gnu: Add 'version-prefix' and 'version-major+minor'; use them. 
The procedure version-prefix truncates a version string to a certain
number of components. version-major+minor is a special case of this,
which extracts the "major.minor" part of the string. Previously this
was handled by an expression common to several packages.

* guix/utils.scm (version-prefix, version-major+minor): New procedures
* gnu/packages/backup.scm (duplicity): Use version-major+minor.
* gnu/packages/cmake.scm (cmake): Likewise.
* gnu/packages/gnome.scm (libbonobo, libbonoboui): Likewise.
* gnu/packages/gnutls.scm (gnutls): Likewise.
* gnu/packages/mail.scm (gmime): Likewise.
* gnu/packages/mpd.scm (mpd): Likewise.
* gnu/packages/mpi.scm (openmpi): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-10-20 15:32:54 +02:00
Eric Bavier
1691b4cdc6 gnu: openmpi: Add memchecker support. 
* gnu/packages/mpi.scm (openmpi) [inputs]: Add valgrind.  Unpropagate
  gfortran.  [arguments]: Add configure flags for memchecker.
 2014-05-18 11:09:42 -05:00
Eric Bavier
5b527256ee gnu: openmpi: Use our hwloc. 
* gnu/packages/mpi.scm (hwloc): Propagate numactl.
  (openmpi)[inputs]: Add hwloc.
  [native-inputs]: Add pkg-config.
  [argument]: Add hwloc configure flags.
 2014-05-12 17:20:32 -05:00
Ludovic Courtès
2b0d560a3f gnu: Add hwloc. 
* gnu/packages/mpi.scm (hwloc): New variable.
  (openmpi): Add TODO comment.
 2014-05-09 15:49:08 +02:00
Eric Bavier
85a84cbd83 gnu: openmpi: Fix typo in download uri 
* gnu/packages/mpi.scm (openmpi)[origin]: Fix typo.
 2014-05-08 17:06:46 -05:00
Eric Bavier
8ede638c4b gnu: openmpi: Avoid "open source" verbiage 
* gnu/packages/mpi.scm (openmpi)[synopsis,description]: Remove mention
  of "open source".
 2014-05-08 14:48:59 -05:00
Eric Bavier
fb0e370928 gnu: Add OpenMPI 
* gnu/packages/mpi.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-05-08 12:42:17 -05:00