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Author SHA1 Message Date
Carlo Zancanaro
e64617c5fa
doc: Document required setup steps for Nix service. 
* doc/guix.texi (Nix service): Add specific channel setup commands, add
commands to create profile directory.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-27 11:51:07 +01:00
Andy Tai
ce5f756375
gnu: pspp: Update to 2.0.0. 
* gnu/packages/statistics.scm (pspp): Update to 2.0.0
  [arguments](phases): Patch test case to make pass due to locale
  [native-inputs]: Switch from Python 2 to Python 3

Change-Id: I9feeab72789347033d2df8f23bda9ea27aaa7dd9
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-27 11:51:07 +01:00
Lars Bilke
dcdc0a5592
gnu: petsc: Reduce closure size. 
Reduces closure size from 828 MiB to 463 MiB (44%) by removing
references to build dependencies such as GCC.

* gnu/packages/maths.scm (petsc)[arguments]: Add
‘clear-reference-to-compiler’ phase.
In ‘clean-install’ phase, also remove “configure-hash”.

Change-Id: I2e6900747b2118546f0a39ceb109b3f2f90e6949
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-27 11:51:06 +01:00
Efraim Flashner
f5f64cd773
gnu: python-databind-json: Allow newer versions of typing-extensions. 
* gnu/packages/python-xyz.scm (python-databind-json)[source]: Add
snippet to allow newer versions of python-typing-extensions.

Change-Id: I9a8ec799d273ba6f92029afd2f5d2007f3579eb3
 2024-02-27 10:59:00 +02:00
Efraim Flashner
99e5f3cd14
gnu: libgit2-1.4: Update to 1.4.6. 
* gnu/packages/version-control.scm (libgit2-1.4): Update to 1.4.6.

Change-Id: Ieb470e93d6be9a2e45585b747efb695ef9f33161
 2024-02-27 08:26:21 +02:00
Efraim Flashner
5bf912330b
gnu: l2md: Fix build on 32-bit systems. 
* gnu/packages/mail.scm (l2md)[source]: Add snippet to gate macOS build
fix to only apply when building for Apple devices.

Change-Id: Id303a89ec78ce160cfb6ebed232a841c8283e812
 2024-02-27 08:26:21 +02:00
Efraim Flashner
9ee57722ce
gnu: libgit2-1.7: Update to 1.7.2. 
* gnu/packages/version-control.scm (libgit2-1.7): Update to 1.7.2.

Change-Id: I60ad4aa2a5b29b027755cf8add848bd4a8b71282
 2024-02-27 08:26:20 +02:00
Ludovic Courtès
4b60a39aa5
gnu: libgit2: Introduce ‘libgit2-1.5’ variable. 
* gnu/packages/version-control.scm (libgit2): Rename to…
(libgit2-1.5): … this.
(libgit2): Alias for ‘libgit2-1.5’.

Change-Id: I7f6aff23df3b968d914736fe723dcdd435176ce2
 2024-02-26 23:41:36 +01:00
Ludovic Courtès
9f00975f55
gnu: guile-git: Depend on libgit2 1.7. 
* gnu/packages/guile.scm (guile-git)[inputs]: Replace LIBGIT2-1.3 with
LIBGIT2-1.7.

Change-Id: Ia386f977b0888b7bd9b26443ac6150428fda2155
 2024-02-26 23:41:36 +01:00
Ludovic Courtès
d2159ee9d1
gnu: guile-git: Update to 0.6.0. 
* gnu/packages/guile.scm (guile-git): Update to 0.6.0.
[source]: Remove ‘patches’ field.
* gnu/packages/patches/guile-git-adjust-for-libgit2-1.2.0.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.

Change-Id: I49300461389bc24a9802fbda5e374a330ffc3715
 2024-02-26 23:41:36 +01:00
Ludovic Courtès
2a7f7af87c
gnu: libgit2: Set ‘GITTEST_FLAKY_STAT’ when running tests on GNU/Hurd. 
* gnu/packages/version-control.scm (libgit2)[arguments]: Install
‘pre-check’ phase when ‘target-hurd?’ returns true.

Change-Id: I664d4aa2a0ad76a10a47ae7bc3c5912756972b46
 2024-02-26 23:41:36 +01:00
Ricardo Wurmus
b6604de226
gnu: Remove python-nltk-3.4. 
* gnu/packages/python-xyz.scm (python-nltk-3.4): Remove variable.

Change-Id: I865380c0428d459147c0980065719c32bf67075a
 2024-02-26 22:53:23 +01:00
Ricardo Wurmus
a15404a592
gnu: python-lunr: Update to 0.7.0.post1. 
* gnu/packages/python-xyz.scm (python-lunr): Update to 0.7.0.post1.
[build-system]: Use pyproject-build-system.
[arguments]: Disable tests that need nodejs.
[native-inputs]: Remove python-mock; add python-coverage,
python-hatch-fancy-pypi-readme, python-hatchling, python-pytest-timeout, and
python-tox.
[propagated-inputs]: Remove python-nltk-3.4; add python-importlib-metadata and
python-typing-extensions.

Change-Id: Ide9b0d98878dd8972d883c1c0e391a9a4b660eba
 2024-02-26 22:53:23 +01:00
Christian Miller via Guix-patches via
bf17a01e06
gnu: Add pass-coffin 
* gnu/packages/password-utils.scm (pass-coffin): New variable.

Reviewed-by: Steve George <steve@futurile.net>

Change-Id: I2fdf6c755b9b75780c5a3c0304e5b961a15640a4
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2024-02-26 16:48:41 +01:00
Andreas Enge
8842826609
gnu: Add paritwine. 
* gnu/packages/algebra.scm (paritwine): New variable.

Change-Id: If2a55dd4a42d4d27a67249bd11592635ade20351
 2024-02-26 15:54:03 +01:00
Andreas Enge
baf4cd20d1
gnu: cm: Update to 0.4.3. 
* gnu/packages/algebra.scm (cm): Update to 0.4.3.
[inputs]: Add flint.

Change-Id: Icb1a01a2abcdf6a0685503a0d032a21b42d464d6
 2024-02-26 15:02:32 +01:00
Ricardo Wurmus
cb4785033d
gnu: r-dmrseq: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.22.1.

Change-Id: I7c05a4927a3984917c6de7bc5daa3f28794894d7
 2024-02-26 13:03:14 +01:00
Ricardo Wurmus
7d69eb77b6
gnu: r-beachmat: Update to 2.18.1. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.18.1.

Change-Id: I854c4c21cad66e3fb2bfe63fe01c31c3aff7d109
 2024-02-26 13:03:14 +01:00
Ricardo Wurmus
9eb9e1a5be
gnu: r-hdf5array: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.30.1.

Change-Id: I48d733554b9c74e10d29b123008ba6d20fa85641
 2024-02-26 13:03:14 +01:00
Ricardo Wurmus
01c7155764
gnu: r-variancepartition: Update to 1.32.5. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.5.

Change-Id: I9195cbe28f85001bcd91fa3d57f0017db5b352b7
 2024-02-26 13:03:13 +01:00
Ricardo Wurmus
bff1489062
gnu: r-a4: Update to 1.50.1. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.1.

Change-Id: If07b255590ad99146a81729af073aac67cd535d4
 2024-02-26 13:03:13 +01:00
Ricardo Wurmus
a12dd734dd
gnu: r-chippeakanno: Update to 3.36.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.36.1.

Change-Id: I133f7ca3032f5f5722a8d5d9cbf1bf1da42ff4a9
 2024-02-26 13:03:13 +01:00
Ricardo Wurmus
66b1080b8d
gnu: r-seqarray: Update to 1.42.2. 
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.2.

Change-Id: I6b4915c8dbdf14054125cac33bfddde4605fbc58
 2024-02-26 13:03:12 +01:00
Ricardo Wurmus
63622bf34e
gnu: r-edger: Update to 4.0.16. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.16.

Change-Id: I542bbe7f290a5282f76eea7b88f605f6fa714624
 2024-02-26 13:03:12 +01:00
Ricardo Wurmus
52c373f107
gnu: r-anf: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-anf): Update to 1.24.1.

Change-Id: I5843d257e4312101fb1b0dc9bbb49bd088bb3b91
 2024-02-26 13:03:12 +01:00
Ricardo Wurmus
866fbcc629
gnu: r-anvil: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.2.

Change-Id: I91fa1253e5f174d9d1d445edd873ceb23a783787
 2024-02-26 13:03:11 +01:00
Ricardo Wurmus
1d85f921f6
gnu: r-mclust: Update to 6.1. 
* gnu/packages/statistics.scm (r-mclust): Update to 6.1.

Change-Id: I52a5bd83b26e0d1d35e494e6dab1e6dec594fdfc
 2024-02-26 12:34:11 +01:00
Ricardo Wurmus
13fc90e284
gnu: r-runit: Update to 0.4.33. 
* gnu/packages/statistics.scm (r-runit): Update to 0.4.33.

Change-Id: I0690643ff91f9ec7e41d1dba68d23eae1d981d8b
 2024-02-26 12:34:11 +01:00
Ricardo Wurmus
fe9bdd7ef7
gnu: r-gdtools: Update to 0.3.6. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.3.6.

Change-Id: I87b02d5665f60c80d28085895b2693cda94f95bc
 2024-02-26 12:34:11 +01:00
Ricardo Wurmus
b8ac0bf3b2
gnu: r-ggdendro: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.2.0.

Change-Id: I2a046a754ff08c83367e39e8692722611ebcb500
 2024-02-26 12:34:11 +01:00
Ricardo Wurmus
bf7a7af1a4
gnu: r-ggplot2: Update to 3.5.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.5.0.

Change-Id: I65435f9ddb69a9c62c79edd4eadd8c3d601251c6
 2024-02-26 12:34:11 +01:00
Ricardo Wurmus
0277cc6c0d
gnu: r-boot: Update to 1.3-30. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-30.

Change-Id: I566d221fb15305381d21816451c6b6ad9ded96e4
 2024-02-26 12:34:11 +01:00
Ricardo Wurmus
e2a04cb31a
gnu: r-rtweet: Update to 2.0.0. 
* gnu/packages/cran.scm (r-rtweet): Update to 2.0.0.

Change-Id: Icbcf69d53421ec7b556e52dbc6b375f0561b9fb3
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
e4279726c8
gnu: r-lwgeom: Update to 0.2-14. 
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-14.

Change-Id: I9a3a32104dbacfcdd85361af9849b9d1b4a1bba1
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
1f0f6c7ae5
gnu: r-readtext: Update to 0.91. 
* gnu/packages/cran.scm (r-readtext): Update to 0.91.

Change-Id: I14ccdf618f63cafa6d45eaacee3471c2eab74179
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
8df7dc03ed
gnu: r-dials: Update to 1.2.1. 
* gnu/packages/cran.scm (r-dials): Update to 1.2.1.

Change-Id: Id0c6d2ee8da567702fe8a6ac3148a3df2c069cea
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
81eaa8ffb0
gnu: r-fastshap: Update to 0.1.1. 
* gnu/packages/cran.scm (r-fastshap): Update to 0.1.1.

Change-Id: Ie2bd2570b427895d6780d762bd121c9962bd2a88
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
a276c9b70d
gnu: r-loo: Update to 2.7.0. 
* gnu/packages/cran.scm (r-loo): Update to 2.7.0.
[propagated-inputs]: Add r-posterior.

Change-Id: I7d4accaa9762de855c739cb65ee6b517086ec8e1
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
b25c576995
gnu: r-sccore: Update to 1.0.5. 
* gnu/packages/cran.scm (r-sccore): Update to 1.0.5.

Change-Id: Ibbf7b22f5ba9340e7f748b1a12bf7b3a28dff16a
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
8f61cce275
gnu: r-afex: Update to 1.3-1. 
* gnu/packages/cran.scm (r-afex): Update to 1.3-1.

Change-Id: Idf37d0963aee6233a1a7a0dfd568efbdc9225607
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
0dfef25a8c
gnu: r-ggeffects: Update to 1.5.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.5.0.

Change-Id: If6c506e395566ccf34254b4c205717efeb10234b
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
31ddac6ab4
gnu: r-mosaic: Update to 1.9.1. 
* gnu/packages/cran.scm (r-mosaic): Update to 1.9.1.

Change-Id: Iae1ec6425ea9dcf82102cc8c6856265baef9ddae
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
917f84dcfe
gnu: r-superlearner: Update to 2.0-29. 
* gnu/packages/cran.scm (r-superlearner): Update to 2.0-29.

Change-Id: I59aaaa9a2195e217966c589aab940f7bfdc6466d
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
ca76d23df2
gnu: r-nodbi: Update to 0.10.2. 
* gnu/packages/cran.scm (r-nodbi): Update to 0.10.2.
[native-inputs]: Add r-knitr.

Change-Id: I052f662b87076c6f3e46129a0195c5e4415c6a4c
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
cd698ba6b4
gnu: r-officer: Update to 0.6.5. 
* gnu/packages/cran.scm (r-officer): Update to 0.6.5.

Change-Id: I709c8af9feb02b838dc6939ec8348fb231ca881f
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
a89ef6742e
gnu: r-renv: Update to 1.0.4. 
* gnu/packages/cran.scm (r-renv): Update to 1.0.4.

Change-Id: I1ed257f239663df37a02908bf204f763222b2e67
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
c87d9a8e1a
gnu: r-ctrdata: Update to 1.17.2. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.17.2.

Change-Id: I019f971fe6cc8c34b63ebdff407e1f2e1ed6b98f
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
47b38a2200
gnu: r-shape: Update to 1.4.6.1. 
* gnu/packages/cran.scm (r-shape): Update to 1.4.6.1.

Change-Id: Idcb756d0d016d9ed519ccdf3c0be4cd795277222
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
90d4cd54b7
gnu: r-secretbase: Update to 0.3.0. 
* gnu/packages/cran.scm (r-secretbase): Update to 0.3.0.

Change-Id: Ic9e75a8746dd0a4d2c5a8ee64f4e242dfeda5fe5
 2024-02-26 12:34:10 +01:00
Ricardo Wurmus
2bf5d4336d
gnu: r-gprofiler2: Update to 0.2.3. 
* gnu/packages/cran.scm (r-gprofiler2): Update to 0.2.3.

Change-Id: Ic6d1fcedc78d98c7d9dde719a98db283e8e3d9ef
 2024-02-26 12:34:10 +01:00