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104008 Commits

Author SHA1 Message Date
宋文武
3435d7644f
gnu: xfce4-mailwatch-plugin: Update to 1.3.1. 
* gnu/packages/xfce.scm (xfce4-mailwatch-plugin): Update to 1.3.1.
 2023-05-01 09:22:25 +08:00
宋文武
588f510a60
gnu: xfce4-fsguard-plugin: Update to 1.1.3. 
* gnu/packages/xfce.scm (xfce4-fsguard-plugin): Update to 1.1.3.
 2023-05-01 09:22:25 +08:00
宋文武
b8cab2ec75
gnu: xfce4-calculator-plugin: Update to 0.7.2. 
* gnu/packages/xfce.scm (xfce4-calculator-plugin): Update to 0.7.2.
 2023-05-01 09:22:25 +08:00
宋文武
57e10cff86
gnu: xfce4-dict: Update to 0.8.5. 
* gnu/packages/xfce.scm (xfce4-dict): Update to 0.8.5.
 2023-05-01 09:22:25 +08:00
宋文武
f475c62fef
gnu: xfce4-whiskermenu-plugin: Update to 2.7.3. 
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.7.3.
 2023-05-01 09:22:25 +08:00
宋文武
de567ec821
gnu: xfce4-battery-plugin: Update to 1.1.5. 
* gnu/packages/xfce.scm (xfce4-battery-plugin): Update to 1.1.5.
 2023-05-01 09:22:25 +08:00
宋文武
e923a096d4
gnu: tumbler: Update to 4.18.1. 
* gnu/packages/xfce.scm (tumbler): Update to 4.18.1.
 2023-05-01 09:22:24 +08:00
宋文武
66c887c5ac
gnu: xfconf: Update to 4.18.1. 
* gnu/packages/xfce.scm (xfconf): Update to 4.18.1.
 2023-05-01 09:22:24 +08:00
Efraim Flashner
23552fb2fb
gnu: presage: Update outdated config scripts. 
* gnu/packages/fcitx.scm (presage)[arguments]: Add a phase to update the
outdated config scripts.
[native-inputs]: Add config.
 2023-05-01 00:30:25 +03:00
Efraim Flashner
1ab846181f
gnu: inkscape: Skip more tests on some architectures. 
* gnu/packages/inkscape.scm (inkscape)[arguments]: Add a phase when
building for aarch64-linux or powerpc64le-linux to skip some more tests.
 2023-05-01 00:30:21 +03:00
kiasoc5
e042567145
gnu: plover: Fix build. 
Fixes this error in tests:

`pkg_resources.DistributionNotFound: The 'wcwidth' distribution was not found and is required by the application`

* gnu/packages/stenography.scm (plover)[inputs]: Add python-wcwidth.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:16:50 +02:00
Brian Cully
1bfba9086c
gnu: slim: Update homepage. 
Moved to github, according to https://www.berlios.de/software/slim/.

* gnu/packages/display-managers.scm (slim) [home-page]:  update URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:15:36 +02:00
Brian Cully
efce51a194
gnu: slim: Fix build failure with GCC-11 
GCC-11 sniffed out a long-standing bug where a pointer was being tested for a
negative value, which is impossible. Instead, check for NULL, which is how the
error result is actually returned.

See https://github.com/iwamatsu/slim/issues/14 for details.

Fixes <https://issues.guix.gnu.org/63155>.

* gnu/packages/display-managers.scm (slim) [fix-0-pointer-comparison]: new
phase

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:14:49 +02:00
kiasoc5
5cb04b570f
gnu: mumi: Add guile-gnutls to inputs. 
This fixes this error when running mumi on foreign distributions:

  Throw to key `gnutls-not-available' with args `("(gnutls) module not available")'.

* gnu/packages/mail.scm (mumi)[inputs]: Add guile-gnutls.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:13:39 +02:00
Josselin Poiret
d9d25bf517
installer: Filter out C.UTF-8 from the list of locales. 
* gnu/installer/locale.scm (supported-locales->locales): Filter out C.UTF-8.  It
doesn't follow the other locales' format, and doesn't have a corresponding
iso639 code.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:11:09 +02:00
Josselin Poiret
9f09903aff
system: guix: Use config's ACL file location. 
* gnu/services/base.scm (substitute-key-authorization): Use %acl-file instead of
hardcoded "/etc/guix/acl".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:11:05 +02:00
Simon Tournier
7f917fefab
gnu: guix: Add guile-semver. 
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
guile-semver.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:08:02 +02:00
Kristian Lein-Mathisen
643692895f
gnu: Add chicken-srfi-18. 
* gnu/packages/chicken.scm (chicken-srfi-18): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:05:53 +02:00
Kristian Lein-Mathisen
8bed4a8530
gnu: Add chicken-compile-file. 
* gnu/packages/chicken.scm (chicken-compile-file): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 23:03:27 +02:00
Olivier Dion
14b2422cef
gnu: Add diffpdf. 
* gnu/packages/pdf.scm (diffpdf): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-30 22:46:45 +02:00
Ricardo Wurmus
a27e0d4533
gnu: r-ggbeeswarm: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.7.2.
[propagated-inputs]: Add r-cli.
 2023-04-30 22:25:32 +02:00
Ricardo Wurmus
86f5c3114b
gnu: r-clusterr: Update to 1.3.1. 
* gnu/packages/cran.scm (r-clusterr): Update to 1.3.1.
 2023-04-30 22:25:32 +02:00
Leo Famulari
e132e48a32
gnu: linux-libre 6.1: Update to 6.1.26. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.26.
(linux-libre-6.1-pristine-source): Update hash.
 2023-04-30 15:09:41 -04:00
Leo Famulari
0d62485f0a
gnu: linux-libre 4.14: Update to 4.14.314. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.314.
(linux-libre-4.14-pristine-source): Update hash.
 2023-04-30 15:09:41 -04:00
Leo Famulari
c3f0f66a77
gnu: linux-libre 4.19: Update to 4.19.282. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.282.
(linux-libre-4.19-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Leo Famulari
8de739e452
gnu: linux-libre 5.4: Update to 5.4.242. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.242.
(linux-libre-5.4-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Leo Famulari
4e73ff4fcc
gnu: linux-libre 5.10: Update to 5.10.179. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.179.
(linux-libre-5.10-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Leo Famulari
1d892736cd
gnu: linux-libre 5.15: Update to 5.15.109. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.109.
(linux-libre-5.15-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Leo Famulari
a3abbc02b4
gnu: linux-libre: Update to 6.2.13. 
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.13.
(linux-libre-6.2-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Marius Bakke
a34348967e
gnu: clitest: Fix test failure with newer grep. 
* gnu/packages/patches/clitest-grep-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/check.scm (clitest)[source](patches): New field.
[arguments]: While at it, remove obsolete substitution.
 2023-04-30 23:25:46 +08:00
Marius Bakke
f9a60f3467
gnu: ungoogled-chromium: Update to 112.0.5615.165-1. 
* gnu/packages/chromium.scm (%chromium-version): Set to 112.0.5615.165.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
 2023-04-30 23:25:46 +08:00
Marius Bakke
7207c372fb
gnu: ungoogled-chromium: Update to 111.0.5563.146-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M111.
(%chromium-version): Set to 111.0.5563.146.
(%ungoogled-origin): Update hash.
(%chromium-gcc-patchset, gcc-patch, %gcc-patches): Remove variables.
(%arch-patches): Remove obsolete.
(ungoogled-chromium)[source](sha256): Update hash.
 2023-04-30 23:25:46 +08:00
Marius Bakke
8807828ff0
gnu: ungoogled-chromium: Update to 110.0.5481.177-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M110.
(%chromium-version): Set to 110.0.5481.177.
(%debian-revision): Bump.
(%ungoogled-origin, %debian-origin): Update hashes.
(%debian-patches): Remove obsolete patch.
(ungoogled-chromium-snippet): Use upstream jsoncpp unbundle script.
(ungoogled-chromium)[source](sha256): Update hash.
[arguments]: Remove obsolete configure flags and substitution.  Use system libffi.
 2023-04-30 23:25:45 +08:00
Marius Bakke
a03743f016
gnu: ungoogled-chromium: Don't add absolute references to libGL and libvulkan. 
Keeping track of the uses of these libraries is a lot of work and ultimately
not worth the trouble -- especially since Chromium supports multiple libGL's
with different ABIs.  Instead we take the easy route and rely on a search path.

* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Remove patching
of libGL.so and libvulkan.so.  Instead wrap with LD_LIBRARY_PATH.
 2023-04-30 23:25:45 +08:00
Efraim Flashner
5834953573
gnu: emacs: Use librsvg-for-system. 
* gnu/packages/emacs.scm (emacs)[inputs]: Replace librsvg input logic
with librsvg-for-system.
 2023-04-30 15:17:25 +03:00
Efraim Flashner
7e1d02d53c
gnu: deluge: Use librsvg-for-system. 
* gnu/packages/bittorent.scm (deluge)[native-inputs]: Replace librsvg
input logic with librsvg-for-system.
 2023-04-30 15:16:34 +03:00
Efraim Flashner
5eaf5c9064
gnu: cl-clsql: Build with mariadb. 
* gnu/packages/lisp-xyz.scm (cl-clsql)[inputs]: Remove mysql. Add
mariadb:dev.
 2023-04-30 12:37:43 +03:00
Efraim Flashner
fee5561746
gnu: sbcl-clsql: Build with mariadb. 
* gnu/packages/lisp-xyz.scm (sbcl-clsql)[inputs]: Remove mysql. Add
mariadb:dev, mariadb:lib.
[arguments]: Adjust custom 'build-helper-library phase to build with
and link to mariadb.
 2023-04-30 12:37:42 +03:00
Efraim Flashner
5a43894247
gnu: opensmtpd-extras: Build with mariadb. 
* gnu/packages/mail.scm (opensmtpd-extras)[inputs]: Remove mysql. Add
mariadb:dev.
 2023-04-30 12:35:56 +03:00
Efraim Flashner
45363fdb17
gnu: ulogd: Build with mariadb. 
* gnu/packages/linux.scm (ulogd)[inputs]: Remove mysql. Add mariadb:dev.
[arguments]: Adjust configure-flags accordingly.
 2023-04-30 12:35:56 +03:00
Efraim Flashner
0fbf12a96a
gnu: inspircd: Build with mariadb. 
* gnu/packages/irc.scm (inspircd)[inputs]: Remove mysql. Add mariadb:dev.
 2023-04-30 12:35:56 +03:00
Efraim Flashner
dbd0d779dd
gnu: neko: Build with mariadb. 
* gnu/packages/haxe.scm (neko)[inputs]: Remove mysql. Add mariadb:dev,
mariadb:lib.
 2023-04-30 12:35:55 +03:00
Efraim Flashner
f2b9e2f935
gnu: ghc-mysql: Build with mariadb. 
* gnu/packages/haskell-xyz.scm (ghc-mysql)[inputs]: Remove mysql. Add
mariadb:dev.
 2023-04-30 12:35:55 +03:00
Efraim Flashner
427439526c
gnu: sysbench: Build with mariadb. 
* gnu/packages/benchmark.scm (sysbench)[arguments]: Remove mysql flag.
[inputs]: Remove mysql. Add mariadb:dev.
 2023-04-30 12:35:55 +03:00
Ricardo Wurmus
7e1d6bb247
gnu: r-ffbase: Fix build with R 4.3.0. 
* gnu/packages/cran.scm (r-ffbase)[arguments]: Add phase 'r-compatibility.
 2023-04-30 10:57:37 +02:00
Leo Famulari
3b3c7ef1f7
gnu: mod-wsgi: Make sure not to keep a store reference to HTTPD. 
* gnu/packages/web.scm (mod-wsgi)[inputs]: Move httpd ...
[native-inputs]: ... to here.
[arguments]: Forbid keeping a reference to httpd.
 2023-04-30 04:47:19 -04:00
Leo Famulari
bdbf3e36cf
gnu: 389-ds-base: Make sure not to keep a store reference to HTTPD. 
* gnu/packages/openldap.scm (389-ds-base)[inputs]: Move httpd ...
[native-inputs]: ... to here.
[arguments]: Forbid keeping a reference to httpd.
 2023-04-30 04:47:19 -04:00
Leo Famulari
15172a5c1e
gnu: neko: Make sure not to keep a store reference to HTTPD. 
* gnu/packages/haxe.scm (neko): Move httpd ...
[native-inputs]: ... to here.
[arguments]: Forbid keeping a reference to httpd.
 2023-04-30 04:47:19 -04:00
Leo Famulari
d3e91a83b6
gnu: httpd: Update to 2.4.57 [security fixes]. 
Fixes CVE-2023-27522, CVE-2023-25690, CVE-2022-37436, CVE-2022-36760,
CVE-2006-20001, CVE-2022-31813, CVE-2022-30556, CVE-2022-30522,
CVE-2022-29404, CVE-2022-28615, CVE-2022-28614, CVE-2022-28330,
CVE-2022-26377, CVE-2022-23943, CVE-2022-22721, CVE-2022-22720,
and CVE-2022-22719.

* gnu/packages/web.scm (httpd): Update to 2.4.57.
(httpd/pinned): New variable.
* gnu/packages/gnome.scm (libsoup-minimal): Replace httpd with httpd/pinned.
 2023-04-30 04:47:18 -04:00
Ricardo Wurmus
85c137adde
gnu: r-motifstack: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.1.
 2023-04-29 23:52:00 +02:00
Ricardo Wurmus
f2ad160acd
gnu: r-chippeakanno: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.1.
 2023-04-29 23:52:00 +02:00
Efraim Flashner
8fe5ed47cb
gnu: rust: Disable support for aarch64-linux, riscv64-linux. 
Support is currently broken and blocks too many other packages.

* gnu/packages/gnome.scm (librsvg-for-system): Only use librsvg on
x86_64-linux.
* gnu/packages/rust.scm (rust-bootstrap)[supported-systems]: Remove
aarch64-linux, riscv64-linux.
 2023-04-29 23:22:30 +03:00
Ricardo Wurmus
8b66099722
gnu: r-norm: Update to 1.0-11.0. 
* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.0.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
1d664f404a
gnu: r-lme4: Update to 1.1-33. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-33.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
eda8cd78b1
gnu: r-sfsmisc: Update to 1.1-15. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-15.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
3f4b0ff490
gnu: r-checkmate: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-checkmate): Update to 2.2.0.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
3f106a8604
gnu: r-xml2: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.4.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
55bc3815aa
gnu: r-dplyr: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.2.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
faff9ff1c3
gnu: r-rlang: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.1.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
c7950f0f10
gnu: r-microbenchmark: Update to 1.4.10. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4.10.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
5ebe950281
gnu: r-mass: Update to 7.3-59. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-59.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
5ab7f2d65e
gnu: r-measurements: Update to 1.5.1. 
* gnu/packages/cran.scm (r-measurements): Update to 1.5.1.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
a465cb32c2
gnu: r-vroom: Update to 1.6.3. 
* gnu/packages/cran.scm (r-vroom): Update to 1.6.3.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
eb374d2302
gnu: r-qtl2: Update to 0.32. 
* gnu/packages/cran.scm (r-qtl2): Update to 0.32.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
dea96222c3
gnu: r-qtl: Update to 1.60. 
* gnu/packages/cran.scm (r-qtl): Update to 1.60.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
cf26acef53
gnu: r-yardstick: Update to 1.2.0. 
* gnu/packages/cran.scm (r-yardstick): Update to 1.2.0.
[propagated-inputs]: Add r-cli, r-lifecycle, and r-tibble.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
d361061ec8
gnu: r-spatstat: Update to 3.0-5. 
* gnu/packages/cran.scm (r-spatstat): Update to 3.0-5.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
d016035a93
gnu: r-spatstat-model: Update to 3.2-3. 
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-3.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
33a3f6e8ea
gnu: r-scatterpie: Update to 0.1.9. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.9.
[propagated-inputs]: Add r-dplyr.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
7b80d7e17f
gnu: r-rcdd: Update to 1.5-2. 
* gnu/packages/cran.scm (r-rcdd): Update to 1.5-2.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
2b3c9a317b
gnu: r-snowballc: Update to 0.7.1. 
* gnu/packages/cran.scm (r-snowballc): Update to 0.7.1.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
86fc50f544
gnu: r-rgdal: Update to 1.6-6. 
* gnu/packages/cran.scm (r-rgdal): Update to 1.6-6.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
a5b43d7ace
gnu: r-parameters: Update to 0.21.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.21.0.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
86de3bd06e
gnu: r-terra: Update to 1.7-29. 
* gnu/packages/cran.scm (r-terra): Update to 1.7-29.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
c96ed127f6
gnu: r-batchtools: Update to 0.9.17. 
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.17.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
c3480bb230
gnu: r-s2: Update to 1.1.3. 
* gnu/packages/cran.scm (r-s2): Update to 1.1.3.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
4112f16267
gnu: r-units: Update to 0.8-2. 
* gnu/packages/cran.scm (r-units): Update to 0.8-2.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
f10e101b46
gnu: r-epi: Update to 2.47.1. 
* gnu/packages/cran.scm (r-epi): Update to 2.47.1.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
e7c6893684
gnu: r-longdat: Update to 1.1.1. 
* gnu/packages/cran.scm (r-longdat): Update to 1.1.1.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
7e0db06005
gnu: r-rmpfr: Update to 0.9-2. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.9-2.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
f290020027
gnu: r-bigrquery: Update to 1.4.2. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.4.2.
[propagated-inputs]: Add r-cli and r-withr.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
26405096ab
gnu: r-ouch: Update to 2.19. 
* gnu/packages/cran.scm (r-ouch): Update to 2.19.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
acad588a3c
gnu: r-afex: Update to 1.3-0. 
* gnu/packages/cran.scm (r-afex): Update to 1.3-0.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
d3c2b0d0e9
gnu: r-fs: Update to 1.6.2. 
* gnu/packages/cran.scm (r-fs): Update to 1.6.2.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
0a43d0b919
gnu: r-tmb: Update to 1.9.4. 
* gnu/packages/cran.scm (r-tmb): Update to 1.9.4.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
9c1797abce
gnu: r-th-data: Update to 1.1-2. 
* gnu/packages/cran.scm (r-th-data): Update to 1.1-2.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
b7047d045d
gnu: r-targets: Update to 1.0.0. 
* gnu/packages/cran.scm (r-targets): Update to 1.0.0.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
92182dd404
gnu: r-cmplot: Update to 4.3.1. 
* gnu/packages/cran.scm (r-cmplot): Update to 4.3.1.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
7ae99d8446
gnu: r-nodbi: Update to 0.9.3. 
* gnu/packages/cran.scm (r-nodbi): Update to 0.9.3.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
207d51639e
gnu: r-rjags: Update to 4-14. 
* gnu/packages/cran.scm (r-rjags): Update to 4-14.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
134b94c432
gnu: r-zip: Update to 2.3.0. 
* gnu/packages/cran.scm (r-zip): Update to 2.3.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
20d775f622
gnu: r-tinytex: Update to 0.45. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.45.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
f471eb86c3
gnu: r-vctrs: Update to 0.6.2. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.6.2.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
71af4ebe56
gnu: r-xfun: Update to 0.39. 
* gnu/packages/cran.scm (r-xfun): Update to 0.39.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
81b339bb00
gnu: r-processx: Update to 3.8.1. 
* gnu/packages/cran.scm (r-processx): Update to 3.8.1.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
2ee7d66973
gnu: r-xts: Update to 0.13.1. 
* gnu/packages/cran.scm (r-xts): Update to 0.13.1.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
200e08161f
gnu: r-recipes: Update to 1.0.6. 
* gnu/packages/cran.scm (r-recipes): Update to 1.0.6.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
fd5ff35dde
gnu: r-fitdistrplus: Update to 1.1-11. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-11.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
e9d5defb87
gnu: r-ctrdata: Update to 1.13.0. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.13.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
7e88aaefc0
gnu: r-ps: Update to 1.7.5. 
* gnu/packages/cran.scm (r-ps): Update to 1.7.5.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6a945dd12c
gnu: r-fontawesome: Update to 0.5.1. 
* gnu/packages/cran.scm (r-fontawesome): Update to 0.5.1.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
cf0453d1d5
gnu: r-climatol: Update to 4.0.0. 
* gnu/packages/cran.scm (r-climatol): Update to 4.0.0.
[propagated-inputs]: Remove r-mapdata and r-maps.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
b1880c7759
gnu: r-carrier: Update to 0.1.1. 
* gnu/packages/cran.scm (r-carrier): Update to 0.1.1.
[propagated-inputs]: Remove r-pryr; add r-lobstr.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
f80e8e4574
gnu: r-cplm: Update to 0.7-11. 
* gnu/packages/cran.scm (r-cplm): Update to 0.7-11.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
5f061c25f3
gnu: r-castor: Update to 1.7.9. 
* gnu/packages/cran.scm (r-castor): Update to 1.7.9.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
2b08f6874e
gnu: r-tictoc: Update to 1.2. 
* gnu/packages/bioinformatics.scm (r-tictoc): Update to 1.2.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
49afe64152
gnu: r-radiant-data: Update to 1.5.6. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.5.6.
[source]: Delete minified JavaScript.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add sources for html2canvas.js.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
376c52a949
gnu: r-rliger: Strip jar timestamps. 
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase
'strip-jar-timestamps; remove trailing #T; add ant-build-system modules.
[source]: Simplify snippet.
[native-inputs]: Add zip.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
46d78bf045
gnu: r-hpar: Avoid internet access. 
ExperimentHub::createHubAccessors needs internet access.  When R tests if the
package can be loaded it runs zzz.R, which contains the call to
createHubAccessors.  We set the variable GUIX_BUILD to conditionally disable
this call.

* gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases:
'set-HOME and 'avoid-internet-access.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
9a2908211c
gnu: r-coin: Delete file with bad encoding. 
* gnu/packages/cran.scm (r-coin)[arguments]: Add phase
'remove-test-file-with-latin-encoding.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
63dea3caf0
gnu: r-cplm: Fix build with R 4.3.0. 
* gnu/packages/cran.scm (r-cplm)[arguments]: Update headers to find definition
for GET_SLOT.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6cb123b190
gnu: r-phyloseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
e0c28e52e4
gnu: r-tximeta: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
a605826139
gnu: r-tricycle: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c33697b714
gnu: r-biscuiteer: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.14.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
04978d4592
gnu: r-omnipathr: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
b2a3e274ec
gnu: r-omicade4: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.40.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
15f364a933
gnu: r-dmrseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3862877bb2
gnu: r-dada2: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
56586f9b9e
gnu: r-bsseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.36.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
096133af16
gnu: r-biotmle: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.24.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0f594abe26
gnu: r-biotip: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.14.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
5a5d466e15
gnu: r-bioqc: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
cb91d8ff79
gnu: r-bionet: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.60.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e1292069fc
gnu: r-bionero: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
26c76918cb
gnu: r-biomvcclass: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.68.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ce9ee69644
gnu: r-mvcclass: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.74.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3d49b388a5
gnu: r-biomformat: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c10979dcbe
gnu: r-biodb: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4eb1e7e542
gnu: r-biocdockermanager: Update to 1.11.0. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.11.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4684b0d333
gnu: r-biocthis: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
fbd4e9195f
gnu: r-basilisk: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d91cc19ee9
gnu: r-basilisk-utils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ad0efa110e
gnu: r-dir-expiry: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1b80b39aa7
gnu: r-genetclassifier: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.40.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
939155e312
gnu: r-minet: Update to 3.58.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.58.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d297d24edb
gnu: r-biobtreer: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1ff662c8e2
gnu: r-bgeedb: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.26.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
189f9d805e
gnu: r-bgeecall: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4dd9fdb68f
gnu: r-beclear: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0d879deae1
gnu: r-megadepth: Update to 1.9.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.9.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c09a9bc427
gnu: r-ballgown: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.32.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e5e7089db5
gnu: r-guitar: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3616dd923f
gnu: r-chromstar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.26.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1b3be92024
gnu: r-snpstats: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.50.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
72288df46a
gnu: r-snapcgh: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.70.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
61432d53ff
gnu: r-pathview: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.40.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
ef6059cf27
gnu: r-ldblock: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.30.0.
[propagated-inputs]: Remove r-ensdb-hsapiens-v75, r-ensembldb, r-genomeinfodb,
r-genomicfiles, r-rsamtools, r-snpstats, and r-variantannotation; add
r-rlang.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c00d4a394d
gnu: r-kegggraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.60.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
70514e0281
gnu: r-gwascat: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.32.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e8a52e54f7
gnu: r-gviz: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
311339801e
gnu: r-ggbio: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.48.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
764220f848
gnu: r-erma: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-erma): Update to 1.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bc7db31ceb
gnu: r-catalyst: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.24.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
d1e16723dd
gnu: r-msmstests: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0d854ac754
gnu: r-msmseda: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bca0afda01
gnu: r-biocio: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.10.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6459537f90
gnu: r-msfeatures: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.8.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f4c4bc5473
gnu: r-mscoreutils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.12.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
643e63ef61
gnu: r-delayedmatrixstats: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
4b4df8d533
gnu: r-sparsematrixstats: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1435a289dd
gnu: r-scran: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c3056799b3
gnu: r-scater: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.28.0.
[propagated-inputs]: Remove r-gridextra; add r-densvis.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
febe8360c3
gnu: r-scuttle: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
8dc03857a6
gnu: r-singler: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-singler): Update to 2.2.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b0a6411b85
gnu: r-singlecellexperiment: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
09ada1eb1e
gnu: r-chromvar: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0609a92c0b
gnu: r-motifmatchr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6263d39069
gnu: r-maftools: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
99c001303d
gnu: r-tfbstools: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
5ab3d66ffc
gnu: r-cner: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.36.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b9b6c29a75
gnu: r-beadarraysnp: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.66.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e76467b72c
gnu: r-beachmat: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f482bb1256
gnu: r-rhdf5lib: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
582dac2949
gnu: r-hdf5array: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
143b70c92b
gnu: r-hitc: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
765b41564a
gnu: r-fithic: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.26.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8866d47bce
gnu: r-fishpond: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.0.
[inputs]: Remove zlib.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
85bc989a66
gnu: r-rgraphviz: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2e81140c18
gnu: r-s4vectors: Update to 0.38.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ed6d919ef0
gnu: r-preprocesscore: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ae8956bbc8
gnu: r-icens: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.72.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ebd0bdd84c
gnu: r-m3c: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.22.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
aff09ecb05
gnu: r-rgreat: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.2.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
bd1b41e8d1
gnu: r-pcatools: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.12.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f2ce4a037f
gnu: r-biodist: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.72.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2f1c5f361f
gnu: r-biocworkflowtools: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.26.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
37de521f22
gnu: r-biocset: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.14.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
72ba2d8f48
gnu: r-biocpkgtools: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.18.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8f9bd84fd9
gnu: r-biocor: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.24.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d63b92465b
gnu: r-bioconcotk: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.20.0.
[propagated-inputs]: Add r-mass.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
94ab8db2d7
gnu: r-multiassayexperiment: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.26.0.
[native-inputs]: Add r-r-rsp.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
621526d5e3
gnu: r-grohmm: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.34.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
29f1477229
gnu: r-experimenthub: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.0.
[propagated-inputs]: Remove r-curl.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d0682c7c04
gnu: r-biocviews: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
0c2009a1b0
gnu: r-biocstyle: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d277f69643
gnu: r-biocgraph: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.62.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b5133a0dc3
gnu: r-bioccheck: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.0.
[propagated-inputs]: Add r-biocfilecache.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
81de52f013
gnu: r-biocbaseutils: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.2.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
39defa2968
gnu: r-ebarrays: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.64.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f7e7bb2007
gnu: r-reactomepa: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2474b005cd
gnu: r-graphite: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.46.0.
[native-inputs]: Add r-r-rsp.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b6350013f8
gnu: r-biobroom: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.32.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9adef62a5b
gnu: r-bioassayr: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.38.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
29944820e1
gnu: r-fmcsr: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.42.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89fce342bb
gnu: r-chemminer: Update to 3.52.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.52.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
02451fb098
gnu: r-bigpint: Update to 1.15.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.15.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d3f1ba4bf2
gnu: r-biggr: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c0b7b4ed00
gnu: r-hyperdraw: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.52.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7f03f14e5f
gnu: r-hypergraph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.72.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c6354be8c6
gnu: r-rsbml: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.58.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7d2852ed0e
gnu: r-bifet: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.20.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f273e6f729
gnu: r-bicare: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.58.0.
[propagated-inputs]: Add r-go-db.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
807271f5b5
gnu: r-bhc: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.52.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
90fc4b4a51
gnu: r-bgx: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.66.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
ee4f843e46
gnu: r-bgmix: Update to 1.59.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.59.0.
[arguments]: Add build phase 'avoid-naming-conflict.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
e8d5475045
gnu: r-acde: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-acde): Update to 1.30.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89a1bc74ce
gnu: r-acme: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-acme): Update to 2.56.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f09fd77618
gnu: r-acgh: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.78.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9b4ebaec75
gnu: r-ace: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ace): Update to 1.18.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
b212b9ca62
gnu: r-universalmotif: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.0.
[propagated-inputs]: Add r-matrixgenerics.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
47b35d3459
gnu: r-unifiedwmwqpcr: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f7c2c248d5
gnu: r-htqpcr: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.54.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
b352e03d83
gnu: r-variancepartition: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c1b48012e6
gnu: r-variantfiltering: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9340b270f7
gnu: r-tilingarray: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.78.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d04f67f677
gnu: r-wavcluster: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.34.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
77d55ff8e6
gnu: r-reqon: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.46.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
5d99ad4da4
gnu: r-seqbias: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.48.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
3dd7d3bf9e
gnu: r-bigmelon: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.26.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
2d821f86cb
gnu: r-gdsfmt: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
217c1275ac
gnu: r-watermelon: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.6.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
69ed0c145f
gnu: r-roc: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.76.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
733b8a2e0d
gnu: r-genie3: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.22.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
a6361a752d
gnu: r-circrnaprofiler: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.14.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
52fd33e996
gnu: r-cicero: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.18.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
3481a56a13
gnu: r-chicago: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.28.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
44aeef066d
gnu: r-rcistarget: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.20.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c5aba0be7c
gnu: r-depecher: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.16.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
043d2dd022
gnu: r-mixomics: Update to 6.24.0. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.24.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
afb011a051
gnu: r-flowsom: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.8.0.
[propagated-inputs]: Remove r-cytoml, r-flowworkspace, r-ggpointdensity, r-ggrepel,
r-pheatmap, r-rcolorbrewer, and r-scattermore.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
974dba4509
gnu: r-cytoml: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.12.0.
[inputs]: Remove zlib.
[propagated-inputs]: Remove r-base64enc, r-corpcor, r-lattice, r-plyr, r-rcpp,
r-rcpparmadillo, r-rcppparallel, r-runit, and r-xml2; add r-cpp11.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
43b33d7992
gnu: r-opencyto: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
fadfa9cc60
gnu: r-flowstats: Update to 4.12.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c31ae38d58
gnu: r-flowworkspace: Update to 4.12.0. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
2cf5e0cb7a
gnu: r-rprotobuflib: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.12.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
9eade45bfb
gnu: r-flowclust: Update to 3.38.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.38.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
ea4adaa7e8
gnu: r-flowviz: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.64.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c83337a943
gnu: r-ggcyto: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.28.0.
 2023-04-29 20:28:03 +02:00
Ricardo Wurmus
557cbfd68c
gnu: r-ncdfflow: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.46.0.
[propagated-inputs]: Remove r-rcpp and r-rcpparmadillo; add r-cpp11.
 2023-04-29 20:28:03 +02:00