Commit Graph

2922 Commits

Author SHA1 Message Date
Ricardo Wurmus
c56b553e97
gnu: r-affydata: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
e06ee7a745
gnu: r-all: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-all): Update to 1.38.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
15e10974ef
gnu: r-hsmmsinglecell: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.16.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
3ff4e48e85
gnu: r-pasilla: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.24.0.
[propagated-inputs]: Remove r-biocstyle, r-knitr, and r-rmarkdown.
[native-inputs]: Add r-knitr.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
4f2ac5f19f
gnu: r-genomationdata: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.28.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
d24b0702b6
gnu: r-genelendatabase: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.32.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
7a58c9af46
gnu: r-copyhelper: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.28.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
e437cf10a4
gnu: r-chromstardata: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.22.0.
2022-05-28 23:19:47 +02:00
Ricardo Wurmus
1413f9f214
gnu: r-celldex: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.6.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
3ce819d563
gnu: r-biscuiteerdata: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.10.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
ccb66a16a0
gnu: r-arrmdata: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.32.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
9db43e4979
gnu: r-aneufinderdata: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.24.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
c89eb68ede
gnu: r-adductdata: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.12.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
7feae8098c
gnu: r-pfam-db: Update to 3.15.0.
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.15.0.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
5efae7b049
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.15.0.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.15.0.
[propagated-inputs]: Add r-annotationdbi.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
8ee1246a38
gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.4.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.4.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
3d93251ea5
gnu: r-bsgenome-hsapiens-ucsc-hg19: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): Update to 1.4.3.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
549a9e6f6a
gnu: r-leidenbase: Update to 0.1.9.
* gnu/packages/bioconductor.scm (r-leidenbase): Update to 0.1.9.
2022-05-28 23:19:46 +02:00
Ricardo Wurmus
319fa58dac
gnu: r-phyloseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.40.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
e0be852a1e
gnu: r-tximeta: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
e290d834d9
gnu: r-tricycle: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.4.0.
[propagated-inputs]: Add r-ggnewscale.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
5ec7143f69
gnu: r-tcgabiolinks: Update to 2.24.1.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.1.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
a4f03b0a55
gnu: r-biscuiteer: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.10.0.
[propagated-inputs]: Add r-iranges.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
6f31f4618a
gnu: r-omnipathr: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.4.0.
[propagated-inputs]: Add r-withr.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
b1c215755a
gnu: r-dmrseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.16.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
4ab8327ba4
gnu: r-bsseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.32.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
397bdc4329
gnu: r-biotmle: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.20.0.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
4b3f9a16f2
gnu: r-biotip: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.10.0.
[propagated-inputs]: Remove r-hmisc; add r-scran.
2022-05-28 23:19:45 +02:00
Ricardo Wurmus
e8e3d333f0
gnu: r-bioqc: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.24.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
dba6a33e3d
gnu: r-bionetstat: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
8fe9bcf0a4
gnu: r-bionet: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.56.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
f5262fa4ed
gnu: r-bionero: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
3391ff6ddb
gnu: r-biomvrcns: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.36.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
7fe83026b7
gnu: r-biomvcclass: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.64.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
a3a8109fe8
gnu: r-mvcclass: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.70.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
eb18527e5f
gnu: r-biomformat: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.24.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
12ee563b41
gnu: r-biodb: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.0.
2022-05-28 23:19:44 +02:00
Ricardo Wurmus
259c003f02
gnu: r-biocdockermanager: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
6766fbb003
gnu: r-biocthis: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.6.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
b007802e4b
gnu: r-basilisk: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
90e56ba6e3
gnu: r-basilisk-utils: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.8.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
5d2c07021c
gnu: r-dir-expiry: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.4.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
3c65a7d577
gnu: r-genetclassifier: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.36.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
c4f8b5759a
gnu: r-minet: Update to 3.54.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.54.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
395f152b92
gnu: r-biobtreer: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.8.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
24c13f9d64
gnu: r-bgeedb: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.0.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
00025cdd23
gnu: r-bgeecall: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.1.
2022-05-28 23:19:43 +02:00
Ricardo Wurmus
460680ef90
gnu: r-beclear: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.12.0.
[propagated-inputs]: Remove r-outliers; add r-dixontest.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
64c3498d9f
gnu: r-megadepth: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.6.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
c2a8c4c248
gnu: r-ballgown: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.28.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
d57d65a628
gnu: r-sushi: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.34.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
8467426bba
gnu: r-guitar: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.12.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
80f63620c5
gnu: r-chromstar: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.22.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
93b59aca4c
gnu: r-snpstats: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.46.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
c784304f9b
gnu: r-pathview: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
c8f930d575
gnu: r-ldblock: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.26.0.
2022-05-28 23:19:42 +02:00
Ricardo Wurmus
564024c01f
gnu: r-kegggraph: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.56.0.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
ee71b376ec
gnu: r-gwascat: Update to 2.28.1.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.28.1.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
b6f77fdc87
gnu: r-gviz: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.40.1.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
97ea85bfcf
gnu: r-ggbio: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.0.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
534743333e
gnu: r-erma: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.12.0.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
1b75b53a0e
gnu: r-catalyst: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.20.1.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
e4a8e6dab4
gnu: r-msmstests: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.34.0.
2022-05-28 23:19:41 +02:00
Ricardo Wurmus
d99da8bb1c
gnu: r-msmseda: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.34.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
f185bf805c
gnu: r-biocio: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.6.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
d34a40c4c0
gnu: r-msfeatures: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.4.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
ec7849c360
gnu: r-mscoreutils: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.8.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
9381702bbc
gnu: r-delayedmatrixstats: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
eca29a788b
gnu: r-sparsematrixstats: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.8.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
5f04cf7bdb
gnu: r-scran: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
9631f2190a
gnu: r-scater: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.24.0.
[propagated-inputs]: Add r-rcppml.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
a8fbcbdb7a
gnu: r-scuttle: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.2.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
816a1ba4dc
gnu: r-singler: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-singler): Update to 1.10.0.
2022-05-28 23:19:40 +02:00
Ricardo Wurmus
decd8480f6
gnu: r-singlecellexperiment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.18.0.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
d9d9f78391
gnu: r-chromvar: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.18.0.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
3ef47df3b6
gnu: r-motifmatchr: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.18.0.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
e213375069
gnu: r-maftools: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.12.0.
[propagated-inputs]: Add r-dnacopy.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
7c9793b3e8
gnu: r-tfbstools: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.34.0.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
bde757d11d
gnu: r-cner: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.32.0.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
18fd5759c7
gnu: r-beachmat: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.12.0.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
3db60a25a7
gnu: r-rhdf5lib: Update to 1.18.2.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.18.2.
[source]: Adjust snippet.
[arguments]: Update build phase 'do-not-use-bundled-hdf5.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
59519a14de
gnu: r-hdf5array: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.0.
2022-05-28 23:19:39 +02:00
Ricardo Wurmus
0b0bce3556
gnu: r-hitc: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.40.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
8b7e1da3b6
gnu: r-fithic: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.22.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
3c57f6d2a0
gnu: r-rgraphviz: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.40.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
c8e364b609
gnu: r-s4vectors: Update to 0.34.0.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.34.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
16419c4639
gnu: r-preprocesscore: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.58.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
0a9838b17d
gnu: r-icens: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-icens): Update to 1.68.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
3e7b5a45e4
gnu: r-m3c: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.18.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
dd33e8b062
gnu: r-rgreat: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.28.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
0f1295e9e9
gnu: r-pcatools: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.8.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
9f3d204c3a
gnu: r-biodist: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.68.0.
2022-05-28 23:19:38 +02:00
Ricardo Wurmus
a56e8ec8fb
gnu: r-biocworkflowtools: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.22.0.
2022-05-28 23:19:37 +02:00
Ricardo Wurmus
22300462dd
gnu: r-biocset: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.10.0.
2022-05-28 23:19:37 +02:00
Ricardo Wurmus
d5875494dd
gnu: r-biocpkgtools: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.0.
2022-05-28 23:19:37 +02:00
Ricardo Wurmus
b86b657862
gnu: r-biocor: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.20.0.
2022-05-28 23:19:37 +02:00
Ricardo Wurmus
e833302c58
gnu: r-bioconcotk: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.16.0.
2022-05-28 23:19:37 +02:00
Ricardo Wurmus
4028c2b3b5
gnu: r-multiassayexperiment: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.22.0.
2022-05-28 23:19:37 +02:00
Ricardo Wurmus
c3733497e0
gnu: r-grohmm: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.30.1.
2022-05-28 23:19:37 +02:00
Ricardo Wurmus
a2756089ef
gnu: r-experimenthub: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.4.0.
2022-05-28 23:19:37 +02:00
Ricardo Wurmus
ad6185a57c
gnu: r-biocviews: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.0.
2022-05-28 23:19:36 +02:00
Ricardo Wurmus
52a79b24b6
gnu: r-biocstyle: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.24.0.
2022-05-28 23:19:36 +02:00
Ricardo Wurmus
d377dd0e2b
gnu: r-biocgraph: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.58.0.
2022-05-28 23:19:36 +02:00
Ricardo Wurmus
98074b0553
gnu: r-bioccheck: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.0.
[propagated-inputs]: Remove r-optparse.
2022-05-28 23:19:36 +02:00
Ricardo Wurmus
89c5079007
gnu: r-ebarrays: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.60.0.
2022-05-28 23:19:36 +02:00
Ricardo Wurmus
449b0f0920
gnu: r-reactomepa: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.40.0.
2022-05-28 23:19:36 +02:00
Ricardo Wurmus
8f240ba849
gnu: r-graphite: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.42.0.
[propagated-inputs]: Remove r-checkmate; add r-rlang.
2022-05-28 23:19:36 +02:00
Ricardo Wurmus
63726dee63
gnu: r-biobroom: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.28.0.
2022-05-28 23:19:36 +02:00
Ricardo Wurmus
4bb7bb8db3
gnu: r-bioassayr: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.34.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
3d99b6af60
gnu: r-fmcsr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.38.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
985723a862
gnu: r-chemminer: Update to 3.48.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.48.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
a2e334d20c
gnu: r-bigpint: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.12.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
e273f1ab82
gnu: r-biggr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.32.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
a13a4d1e8f
gnu: r-hyperdraw: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.48.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
631c408da7
gnu: r-hypergraph: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.68.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
39bd70c43c
gnu: r-rsbml: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.54.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
5ab4747f77
gnu: r-bifet: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.16.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
0e4dc0e9bf
gnu: r-bicare: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.54.0.
2022-05-28 23:19:35 +02:00
Ricardo Wurmus
3a938a5813
gnu: r-bhc: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.48.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
8c4e6cfb29
gnu: r-bgx: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.62.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
c988069a9d
gnu: r-bgmix: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.56.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
58386d0f40
gnu: r-acde: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-acde): Update to 1.26.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
7fd611926e
gnu: r-acme: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-acme): Update to 2.52.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
0b03a2f324
gnu: r-acgh: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.74.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
ac1b83ff82
gnu: r-ace: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-ace): Update to 1.14.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
fffa2581c3
gnu: r-universalmotif: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
6f5cd05395
gnu: r-unifiedwmwqpcr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.32.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
faaa54d0a8
gnu: r-htqpcr: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.50.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
f27a511f7a
gnu: r-variancepartition: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.26.0.
2022-05-28 23:19:34 +02:00
Ricardo Wurmus
286bed66fd
gnu: r-variantfiltering: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.32.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
9825c2b03d
gnu: r-timeseriesexperiment: Update to 1.13.0.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.13.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
6291ee1e5b
gnu: r-wavcluster: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.30.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
988ed7b090
gnu: r-reqon: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.42.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
d68798fbd9
gnu: r-seqbias: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.44.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
c272bc0b19
gnu: r-bigmelon: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.22.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
c9bdb12ba3
gnu: r-gdsfmt: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.32.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
0c611d7f4f
gnu: r-watermelon: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.2.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
0a64990428
gnu: r-roc: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.72.0.
2022-05-28 23:19:33 +02:00
Ricardo Wurmus
8ad4197c23
gnu: r-genie3: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.18.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
840ffa0bfa
gnu: r-circrnaprofiler: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.10.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
54e790e684
gnu: r-cicero: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.14.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
876f7f9c50
gnu: r-chicago: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.24.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
d88de74e61
gnu: r-rcistarget: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.16.0.
[propagated-inputs]: Remove r-feather; add r-s4vectors.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
b1f4698988
gnu: r-depecher: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.12.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
af575f5b37
gnu: r-mixomics: Update to 6.20.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.20.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
2b9201ae8a
gnu: r-flowsom: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.4.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
74abd80a3f
gnu: r-cytoml: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
31604d4afc
gnu: r-opencyto: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.0.
2022-05-28 23:19:32 +02:00
Ricardo Wurmus
1d6586a8c7
gnu: r-flowstats: Update to 4.8.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.0.
[propagated-inputs]: Add r-corpcor and r-mnormt.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
6b07853785
gnu: r-flowworkspace: Update to 4.8.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.8.0.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
cf72f829dc
gnu: r-rprotobuflib: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.8.0.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
9305453a66
gnu: r-flowclust: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.34.0.
[propagated-inputs]: Remove r-clue, r-corpcor, r-ellipse, r-flowviz, and r-mnormt.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
2c76fce33a
gnu: r-flowviz: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.0.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
edbabc91cc
gnu: r-ggcyto: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.0.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
7db8599d85
gnu: r-ncdfflow: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.0.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
739beb90c4
gnu: r-flowmeans: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.56.0.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
e5a261cd34
gnu: r-flowcore: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.8.0.
2022-05-28 23:19:31 +02:00
Ricardo Wurmus
3f7c9b93a2
gnu: r-cytolib: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.8.0.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
d44194e807
gnu: r-consensusclusterplus: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.60.0.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
73b695f06d
gnu: r-flowutils: Update to 1.59.0.
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.59.0.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
44b596f088
gnu: r-rsubread: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.1.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
eab93418bf
gnu: r-annotatr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.22.0.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
9986cc0bdf
gnu: r-biosigner: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.0.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
bc2d0114f8
gnu: r-ropls: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.0.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
ea931c7223
gnu: r-multidataset: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.24.0.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
e5b0fac414
gnu: r-birewire: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.28.0.
2022-05-28 23:19:30 +02:00
Ricardo Wurmus
e037f48fcc
gnu: r-rqc: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.30.0.
2022-05-28 23:19:29 +02:00
Ricardo Wurmus
2a5a695855
gnu: r-quasr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.36.0.
2022-05-28 23:19:29 +02:00
Ricardo Wurmus
9360c7f166
gnu: r-rhisat2: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.12.0.
2022-05-28 23:19:29 +02:00
Ricardo Wurmus
5e39a816fe
gnu: r-sgseq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.30.0.
2022-05-28 23:19:29 +02:00
Ricardo Wurmus
ac90ccab42
gnu: r-rbowtie: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.36.0.
2022-05-28 23:19:29 +02:00
Ricardo Wurmus
bd518b3b8a
gnu: r-iclusterplus: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.32.0.
2022-05-28 23:19:29 +02:00
Ricardo Wurmus
143a3dd032
gnu: r-biocfilecache: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.4.0.
2022-05-28 23:19:29 +02:00
Ricardo Wurmus
8fdd1a8aab
gnu: r-arrmnormalization: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.36.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
fee94f676b
gnu: r-progeny: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.18.0.
[propagated-inputs]: Add r-decoupler and r-reshape2.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
7ddf44ccaf
gnu: r-rbowtie2: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.2.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
74abb0cfca
gnu: r-zfpkm: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.18.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
40d384423c
gnu: r-zinbwave: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.18.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
6885db9d14
gnu: r-webbioc: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.68.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
30b9b1774b
gnu: r-widgettools: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.74.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
c0de7bad0a
gnu: r-wiggleplotr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.20.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
d59260a1dd
gnu: r-wrench: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.14.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
ec91ec29f1
gnu: r-wppi: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.4.0.
2022-05-28 23:19:28 +02:00
Ricardo Wurmus
d01f1c3424
gnu: r-xcms: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.18.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
9873a3a710
gnu: r-massspecwavelet: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.62.0.
[propagated-inputs]: Remove r-waveslim.
[native-inputs]: Add r-knitr.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
63035ab55b
gnu: r-roar: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.32.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
8ae5967136
gnu: r-yarn: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.22.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
1ebbd9ee55
gnu: r-quantro: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.30.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
3fa5b90562
gnu: r-gcrma: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.68.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
e5694d7e9f
gnu: r-yapsa: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.22.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
648b99f7f6
gnu: r-somaticsignatures: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.32.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
342986b172
gnu: r-gtrellis: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.28.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
ba66644856
gnu: r-yamss: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.22.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
f27b8dfc8b
gnu: r-ebimage: Update to 4.38.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.38.0.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
5bd8b53432
gnu: r-aucell: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.18.1.
[propagated-inputs]: Remove r-s4vectors; add r-delayedarray and r-delayedmatrixstats.
2022-05-28 23:19:27 +02:00
Ricardo Wurmus
00eda6acec
gnu: r-allelicimbalance: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.34.0.
2022-05-28 23:19:26 +02:00
Ricardo Wurmus
4e95453274
gnu: r-annotationtools: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.70.0.
2022-05-28 23:19:26 +02:00
Ricardo Wurmus
d3ff3a75cd
gnu: r-gofuncr: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.16.0.
2022-05-28 23:19:26 +02:00
Ricardo Wurmus
5fce56ab4b
gnu: r-atacseqqc: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.20.2.
2022-05-28 23:19:26 +02:00
Ricardo Wurmus
8f957d34f1
gnu: r-genomicscores: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.0.
2022-05-28 23:19:26 +02:00