Commit Graph

4057 Commits

Author SHA1 Message Date
Ricardo Wurmus
0d854ac754
gnu: r-msmseda: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.38.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bca0afda01
gnu: r-biocio: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.10.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6459537f90
gnu: r-msfeatures: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.8.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f4c4bc5473
gnu: r-mscoreutils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.12.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
643e63ef61
gnu: r-delayedmatrixstats: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
4b4df8d533
gnu: r-sparsematrixstats: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1435a289dd
gnu: r-scran: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c3056799b3
gnu: r-scater: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.28.0.
[propagated-inputs]: Remove r-gridextra; add r-densvis.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
febe8360c3
gnu: r-scuttle: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
8dc03857a6
gnu: r-singler: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-singler): Update to 2.2.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b0a6411b85
gnu: r-singlecellexperiment: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.22.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
09ada1eb1e
gnu: r-chromvar: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0609a92c0b
gnu: r-motifmatchr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.22.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6263d39069
gnu: r-maftools: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.16.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
99c001303d
gnu: r-tfbstools: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.38.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
5ab3d66ffc
gnu: r-cner: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.36.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b9b6c29a75
gnu: r-beadarraysnp: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.66.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e76467b72c
gnu: r-beachmat: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.16.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f482bb1256
gnu: r-rhdf5lib: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
582dac2949
gnu: r-hdf5array: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
143b70c92b
gnu: r-hitc: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.44.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
765b41564a
gnu: r-fithic: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.26.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8866d47bce
gnu: r-fishpond: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.0.
[inputs]: Remove zlib.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
85bc989a66
gnu: r-rgraphviz: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.44.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2e81140c18
gnu: r-s4vectors: Update to 0.38.0.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ed6d919ef0
gnu: r-preprocesscore: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ae8956bbc8
gnu: r-icens: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-icens): Update to 1.72.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ebd0bdd84c
gnu: r-m3c: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.22.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
aff09ecb05
gnu: r-rgreat: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.2.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
bd1b41e8d1
gnu: r-pcatools: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.12.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f2ce4a037f
gnu: r-biodist: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.72.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2f1c5f361f
gnu: r-biocworkflowtools: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.26.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
37de521f22
gnu: r-biocset: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.14.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
72ba2d8f48
gnu: r-biocpkgtools: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.18.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8f9bd84fd9
gnu: r-biocor: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.24.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d63b92465b
gnu: r-bioconcotk: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.20.0.
[propagated-inputs]: Add r-mass.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
94ab8db2d7
gnu: r-multiassayexperiment: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.26.0.
[native-inputs]: Add r-r-rsp.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
621526d5e3
gnu: r-grohmm: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.34.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
29f1477229
gnu: r-experimenthub: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.0.
[propagated-inputs]: Remove r-curl.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d0682c7c04
gnu: r-biocviews: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
0c2009a1b0
gnu: r-biocstyle: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d277f69643
gnu: r-biocgraph: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.62.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b5133a0dc3
gnu: r-bioccheck: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.0.
[propagated-inputs]: Add r-biocfilecache.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
81de52f013
gnu: r-biocbaseutils: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.2.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
39defa2968
gnu: r-ebarrays: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.64.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f7e7bb2007
gnu: r-reactomepa: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.44.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2474b005cd
gnu: r-graphite: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.46.0.
[native-inputs]: Add r-r-rsp.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b6350013f8
gnu: r-biobroom: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.32.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9adef62a5b
gnu: r-bioassayr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.38.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
29944820e1
gnu: r-fmcsr: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.42.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89fce342bb
gnu: r-chemminer: Update to 3.52.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.52.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
02451fb098
gnu: r-bigpint: Update to 1.15.0.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.15.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d3f1ba4bf2
gnu: r-biggr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.36.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c0b7b4ed00
gnu: r-hyperdraw: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.52.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7f03f14e5f
gnu: r-hypergraph: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.72.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c6354be8c6
gnu: r-rsbml: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.58.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7d2852ed0e
gnu: r-bifet: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.20.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f273e6f729
gnu: r-bicare: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.58.0.
[propagated-inputs]: Add r-go-db.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
807271f5b5
gnu: r-bhc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.52.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
90fc4b4a51
gnu: r-bgx: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.66.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
ee4f843e46
gnu: r-bgmix: Update to 1.59.0.
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.59.0.
[arguments]: Add build phase 'avoid-naming-conflict.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
e8d5475045
gnu: r-acde: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-acde): Update to 1.30.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89a1bc74ce
gnu: r-acme: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-acme): Update to 2.56.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f09fd77618
gnu: r-acgh: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.78.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9b4ebaec75
gnu: r-ace: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-ace): Update to 1.18.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
b212b9ca62
gnu: r-universalmotif: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.0.
[propagated-inputs]: Add r-matrixgenerics.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
47b35d3459
gnu: r-unifiedwmwqpcr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.36.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f7c2c248d5
gnu: r-htqpcr: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.54.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
b352e03d83
gnu: r-variancepartition: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c1b48012e6
gnu: r-variantfiltering: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9340b270f7
gnu: r-tilingarray: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.78.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d04f67f677
gnu: r-wavcluster: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.34.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
77d55ff8e6
gnu: r-reqon: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.46.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
5d99ad4da4
gnu: r-seqbias: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.48.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
3dd7d3bf9e
gnu: r-bigmelon: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.26.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
2d821f86cb
gnu: r-gdsfmt: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
217c1275ac
gnu: r-watermelon: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.6.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
69ed0c145f
gnu: r-roc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.76.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
733b8a2e0d
gnu: r-genie3: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.22.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
a6361a752d
gnu: r-circrnaprofiler: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.14.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
52fd33e996
gnu: r-cicero: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.18.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
3481a56a13
gnu: r-chicago: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.28.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
44aeef066d
gnu: r-rcistarget: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.20.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c5aba0be7c
gnu: r-depecher: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.16.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
043d2dd022
gnu: r-mixomics: Update to 6.24.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.24.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
afb011a051
gnu: r-flowsom: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.8.0.
[propagated-inputs]: Remove r-cytoml, r-flowworkspace, r-ggpointdensity, r-ggrepel,
r-pheatmap, r-rcolorbrewer, and r-scattermore.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
974dba4509
gnu: r-cytoml: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.12.0.
[inputs]: Remove zlib.
[propagated-inputs]: Remove r-base64enc, r-corpcor, r-lattice, r-plyr, r-rcpp,
r-rcpparmadillo, r-rcppparallel, r-runit, and r-xml2; add r-cpp11.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
43b33d7992
gnu: r-opencyto: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
fadfa9cc60
gnu: r-flowstats: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c31ae38d58
gnu: r-flowworkspace: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
2cf5e0cb7a
gnu: r-rprotobuflib: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
9eade45bfb
gnu: r-flowclust: Update to 3.38.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.38.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
ea4adaa7e8
gnu: r-flowviz: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.64.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c83337a943
gnu: r-ggcyto: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.28.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
557cbfd68c
gnu: r-ncdfflow: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.46.0.
[propagated-inputs]: Remove r-rcpp and r-rcpparmadillo; add r-cpp11.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
e346747a7b
gnu: r-flowmeans: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.60.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
0b653ec7f9
gnu: r-flowcore: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
643bf1a6c7
gnu: r-cytolib: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
bff572d037
gnu: r-consensusclusterplus: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.64.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
52719d2995
gnu: r-flowai: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.30.0.
2023-04-29 20:28:03 +02:00