gnu: Use INSTALL-FILE where appropriate.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler INSTALL-FILE for COPY-FILE when invoked with redundant arguments. * gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity, edirect, fasttree, rsem, samtools-0.1): Likewise. * gnu/packages/code.scm (withershins): Likewise. * gnu/packages/conky.scm (conky): Likewise. * gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise. * gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise. * gnu/packages/engineering.scm (librecad): Likewise.
This commit is contained in:
Tobias Geerinckx-Rice
parent
618e4bfbad
commit
f38607536e
@ -905,9 +905,7 @@ commands and their arguments.")
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(man8 (string-append man "/man8")))
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(define (copy-man-page target)
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(lambda (file)
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(copy-file file
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(string-append target "/"
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(basename file)))))
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(install-file file target)))
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(mkdir-p man5) (mkdir man8)
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(for-each (copy-man-page man5)
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@ -151,11 +151,9 @@ and several other tools.")
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(bin (string-append out "/bin"))
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(man (string-append out "/share/man/man1")))
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(mkdir-p bin)
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(copy-file "aragorn"
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(string-append bin "/aragorn"))
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(install-file "aragorn" bin)
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(mkdir-p man)
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(copy-file "aragorn.1"
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(string-append man "/aragorn.1")))
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(install-file "aragorn.1" man))
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#t)))))
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(home-page "http://mbio-serv2.mbioekol.lu.se/ARAGORN")
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(synopsis "Detect tRNA, mtRNA and tmRNA genes in nucleotide sequences")
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@ -1700,15 +1698,16 @@ gene predictor designed to work with assembled, aligned RNA-seq transcripts.")
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(replace
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'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin")))
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(copy-recursively "src" (string-append out "/src"))
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(mkdir (string-append out "/bin"))
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(mkdir bin)
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;; Add "src" directory to module lookup path.
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(substitute* "couger"
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(("from argparse")
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(string-append "import sys\nsys.path.append(\""
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out "\")\nfrom argparse")))
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(copy-file "couger" (string-append out "/bin/couger")))
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(install-file "couger" bin))
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#t))
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(add-after
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'install 'wrap-program
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@ -2231,8 +2230,7 @@ quantitative phenotypes.")
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(let ((target (string-append (assoc-ref outputs "out")
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"/bin")))
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(mkdir-p target)
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(copy-file "edirect.pl"
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(string-append target "/edirect.pl"))
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(install-file "edirect.pl" target)
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#t)))
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(add-after
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'install 'wrap-program
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@ -2378,10 +2376,8 @@ ChIP-Seq, and analysis of metagenomic data.")
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(let ((bin (string-append (assoc-ref outputs "out")
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"/bin")))
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(mkdir-p bin)
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(copy-file "scripts/convertToEBD.py"
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(string-append bin "/convertToEBD.py"))
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(copy-file "bin/ExpressBetaDiversity"
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(string-append bin "/ExpressBetaDiversity"))
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(install-file "scripts/convertToEBD.py" bin)
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(install-file "bin/ExpressBetaDiversity" bin)
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#t))))))
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(inputs
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`(("python" ,python-2)))
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@ -2440,10 +2436,8 @@ similarity of community members.")
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(let ((bin (string-append (assoc-ref outputs "out")
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"/bin")))
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(mkdir-p bin)
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(copy-file "FastTree"
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(string-append bin "/FastTree"))
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(copy-file "FastTreeMP"
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(string-append bin "/FastTreeMP"))
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(install-file "FastTree" bin)
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(install-file "FastTreeMP" bin)
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#t))))))
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(home-page "http://www.microbesonline.org/fasttree")
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(synopsis "Infers approximately-maximum-likelihood phylogenetic trees")
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@ -4101,11 +4095,9 @@ phylogenies.")
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(mkdir-p bin)
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(mkdir-p perl)
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(for-each (lambda (file)
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(copy-file file
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(string-append bin (basename file))))
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(install-file file bin))
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(find-files "." "rsem-.*"))
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(copy-file "rsem_perl_utils.pm"
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(string-append perl "/rsem_perl_utils.pm")))
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(install-file "rsem_perl_utils.pm" perl))
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#t))
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(add-after
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'install 'wrap-program
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@ -4336,8 +4328,7 @@ viewer.")
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(let ((bin (string-append
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(assoc-ref outputs "out") "/bin")))
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(mkdir-p bin)
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(copy-file "samtools"
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(string-append bin "/samtools"))
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(install-file "samtools" bin)
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#t)))
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(delete 'patch-tests)
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(delete 'configure))))))))
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@ -271,13 +271,13 @@ features that are not supported by the standard @code{stdio} implementation.")
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(replace
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'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(mkdir-p (string-append out "/lib"))
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(mkdir (string-append out "/include"))
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(copy-file "src/withershins.hpp"
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(string-append out "/include/withershins.hpp"))
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(copy-file "src/libwithershins.a"
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(string-append out "/lib/libwithershins.a")))
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(let* ((out (assoc-ref outputs "out"))
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(include (string-append out "/include"))
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(lib (string-append out "/lib")))
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(mkdir-p include)
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(install-file "src/withershins.hpp" include)
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(mkdir-p lib)
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(install-file "src/libwithershins.a" lib))
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#t)))))
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(home-page "https://github.com/cameronwhite/withershins")
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(inputs
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@ -64,7 +64,7 @@
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
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(mkdir-p bin)
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(copy-file "src/conky" (string-append bin "/conky"))))
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(install-file "src/conky" bin)))
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%standard-phases))))
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(inputs
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`(("freetype" ,freetype)
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@ -68,10 +68,10 @@
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(mkdir-p bin)
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(mkdir-p doc)
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(for-each (lambda (h)
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(copy-file h (string-append doc "/" (basename h))))
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(install-file h doc))
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`("License.txt" ,@(find-files "www" ".*\\.html")))
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(for-each (lambda (b)
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(copy-file b (string-append bin "/" b)))
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(install-file b bin))
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`("delta" "multidelta" "topformflat")))))
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(alist-delete 'configure %standard-phases))))
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(home-page "http://delta.tigris.org/")
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@ -212,13 +212,13 @@ tools that process C/C++ code.")
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(system* "tar" "xf"
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(assoc-ref inputs "afl-src")))
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(error "tar failed to unpack afl-src"))
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(copy-file (string-append patch-dir
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"/afl-qemu-cpu-inl.h")
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"./afl-qemu-cpu-inl.h")
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(install-file (string-append patch-dir
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"/afl-qemu-cpu-inl.h")
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".")
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(copy-file (string-append afl-dir "/config.h")
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"./afl-config.h")
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(copy-file (string-append afl-dir "/types.h")
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"./types.h")
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(install-file (string-append afl-dir "/types.h")
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".")
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(substitute* "afl-qemu-cpu-inl.h"
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(("\\.\\./\\.\\./config.h") "afl-config.h"))
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(substitute* (string-append patch-dir
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@ -2101,7 +2101,7 @@ to a key in your preferred mode.")
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;; keep only file of interest
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'(begin
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(for-each delete-file '("dot-emacs.el" "Makefile"))
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(copy-file "6.945-config/mit-scheme-doc.el" "mit-scheme-doc.el")
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(install-file "6.945-config/mit-scheme-doc.el" ".")
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(delete-file-recursively "6.945-config")))
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(file-name (string-append name "-" version ".tar.bz2"))
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(method url-fetch)
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@ -96,13 +96,13 @@
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(assoc-ref inputs "boost")))))
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(mkdir-p (string-append out "/bin"))
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(mkdir-p (string-append out "/share/librecad"))
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(copy-file "unix/librecad"
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(string-append out "/bin/librecad"))
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(copy-recursively "unix/resources"
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(string-append out "/share/librecad"))))))))
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin"))
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(share (string-append out "/share/librecad")))
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(mkdir-p bin)
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(install-file "unix/librecad" bin)
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(mkdir-p share)
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(copy-recursively "unix/resources" share)))))))
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(inputs
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`(("boost" ,boost)
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("muparser" ,muparser)
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