gnu: Add vbz-compression.
* gnu/packages/bioinformatics.scm (vbz-compression): New variable.
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@ -13856,6 +13856,43 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
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are generated using @code{ggplot2}.")
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are generated using @code{ggplot2}.")
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(license license:expat)))
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(license license:expat)))
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(define-public vbz-compression
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(package
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(name "vbz-compression")
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(version "1.0.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/nanoporetech/vbz_compression/")
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(commit (string-append "v" version))
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;; We include the streamvbyte sources
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(recursive? #true)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1c6wsrnw03vsc5cfp2rdakly5xy55m9chjmy6v685yapdwirdky0"))))
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(build-system cmake-build-system)
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(arguments
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`(#:configure-flags
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'("-DENABLE_CONAN=OFF"
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;; Python things aren't even installed, so we might as well
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;; disable building them.
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"-DENABLE_PYTHON=OFF")))
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(inputs
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`(;("hdf5" ,hdf5-1.10)
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("zstd" ,zstd "lib")))
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(native-inputs
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`(("googlebenchmark" ,googlebenchmark)))
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(home-page "https://github.com/nanoporetech/vbz_compression/")
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(synopsis "VBZ compression plugin for nanopore signal data")
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(description
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"VBZ Compression uses variable byte integer encoding to compress
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nanopore signal data. The performance of VBZ is achieved by taking
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advantage of the properties of the raw signal and therefore is most
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effective when applied to the signal dataset.")
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(license license:mpl2.0)))
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(define-public python-ont-fast5-api
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(define-public python-ont-fast5-api
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(package
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(package
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(name "python-ont-fast5-api")
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(name "python-ont-fast5-api")
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