gnu: Add r-bsgenome-hsapiens-ucsc-hg19.

* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): New
  variable.
This commit is contained in:
Ricardo Wurmus 2016-03-18 12:15:50 +01:00
parent 936e7d6774
commit c90a4baff6

View File

@ -4769,6 +4769,37 @@ plots the corresponding sequence logo as introduced by Schneider and
Stephens (1990).")
(license license:lgpl2.0+)))
(define-public r-bsgenome-hsapiens-ucsc-hg19
(package
(name "r-bsgenome-hsapiens-ucsc-hg19")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "http://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Hsapiens.UCSC.hg19_"
version ".tar.gz"))
(sha256
(base32
"1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"))))
(properties
`((upstream-name . "BSgenome.Hsapiens.UCSC.hg19")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"http://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/")
(synopsis "Full genome sequences for Homo sapiens")
(description
"This package provides full genome sequences for Homo sapiens as provided
by UCSC (hg19, February 2009) and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")