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gnu: Add r-demultiplex.

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* gnu/packages/bioinformatics.scm (r-demultiplex): New variable.
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Ricardo Wurmus 2021-01-28 22:24:17 +01:00
parent d889c96be4
commit c4a2cbeb06
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gnu/packages/bioinformatics.scm
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@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
@ -7269,6 +7269,45 @@ between two different types of motif instances using as much relevant
information as possible.")
(license (list license:gpl2+ license:gpl3+))))
(define-public r-demultiplex
(let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
(revision "1"))
(package
(name "r-demultiplex")
(version (git-version "1.0.2" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/chris-mcginnis-ucsf/MULTI-seq")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"01kv88wp8vdaq07sjk0d3d1cb553mq1xqg0war81pgmg63bgi38w"))))
(properties `((upstream-name . "deMULTIplex")))
(build-system r-build-system)
(propagated-inputs
`(("r-kernsmooth" ,r-kernsmooth)
("r-reshape2" ,r-reshape2)
("r-rtsne" ,r-rtsne)
("r-shortread" ,r-shortread)
("r-stringdist" ,r-stringdist)))
(home-page "https://github.com/chris-mcginnis-ucsf/MULTI-seq")
(synopsis "MULTI-seq pre-processing and classification tools")
(description
"deMULTIplex is an R package for analyzing single-cell RNA sequencing
data generated with the MULTI-seq sample multiplexing method. The package
includes software to
@enumerate
@item Convert raw MULTI-seq sample barcode library FASTQs into a sample
barcode UMI count matrix, and
@item Classify cell barcodes into sample barcode groups.
@end enumerate
")
(license license:cc0))))
(define-public r-genefilter
(package
(name "r-genefilter")