gnu: Add idr.

* gnu/packages/bioinformatics.scm (idr): New variable.
This commit is contained in:
Ricardo Wurmus 2015-06-16 11:33:26 +02:00
parent f3457e7001
commit c4325f6269

View File

@ -1136,6 +1136,56 @@ data. It also provides the bgzip, htsfile, and tabix utilities.")
;; the rest is released under the Expat license
(license (list license:expat license:bsd-3))))
(define-public idr
(package
(name "idr")
(version "2.0.0")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/nboley/idr/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1k3x44biak00aiv3hpm1yd6nn4hhp7n0qnbs3zh2q9sw7qr1qj5r"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after
'install 'wrap-program
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(python-version (string-take (string-take-right
(assoc-ref inputs "python") 5) 3))
(path (string-join
(map (lambda (name)
(string-append (assoc-ref inputs name)
"/lib/python" python-version
"/site-packages"))
'("python-scipy"
"python-numpy"
"python-matplotlib"))
":")))
(wrap-program (string-append out "/bin/idr")
`("PYTHONPATH" ":" prefix (,path))))
#t)))))
(inputs
`(("python-scipy" ,python-scipy)
("python-numpy" ,python-numpy)
("python-matplotlib" ,python-matplotlib)))
(native-inputs
`(("python-cython" ,python-cython)
("python-setuptools" ,python-setuptools)))
(home-page "https://github.com/nboley/idr")
(synopsis "Tool to measure the irreproducible discovery rate (IDR)")
(description
"The IDR (Irreproducible Discovery Rate) framework is a unified approach
to measure the reproducibility of findings identified from replicate
experiments and provide highly stable thresholds based on reproducibility.")
(license license:gpl3+)))
(define-public macs
(package
(name "macs")