gnu: r-motifrg: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-motifrg): Move from here... * gnu/packages/bioconductor.scm (r-motifrg): ...to here.
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@ -3129,6 +3129,33 @@ and the assessment of differential expression. The analysis methods apply to
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different technologies, including microarrays, RNA-seq, and quantitative PCR.")
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different technologies, including microarrays, RNA-seq, and quantitative PCR.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-motifrg
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(package
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(name "r-motifrg")
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(version "1.31.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "motifRG" version))
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(sha256
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(base32
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"1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
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(properties `((upstream-name . "motifRG")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
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("r-iranges" ,r-iranges)
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("r-seqlogo" ,r-seqlogo)
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("r-xvector" ,r-xvector)))
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(home-page "https://bioconductor.org/packages/motifRG")
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(synopsis "Discover motifs in high throughput sequencing data")
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(description
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"This package provides tools for discriminative motif discovery in high
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throughput genetic sequencing data sets using regression methods.")
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(license license:artistic2.0)))
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(define-public r-msnbase
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(define-public r-msnbase
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(package
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(package
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(name "r-msnbase")
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(name "r-msnbase")
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@ -8046,33 +8046,6 @@ plots the corresponding sequence logo as introduced by Schneider and
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Stephens (1990).")
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Stephens (1990).")
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(license license:lgpl2.0+)))
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(license license:lgpl2.0+)))
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(define-public r-motifrg
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(package
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(name "r-motifrg")
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(version "1.31.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "motifRG" version))
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(sha256
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(base32
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"1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
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(properties `((upstream-name . "motifRG")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
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("r-iranges" ,r-iranges)
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("r-seqlogo" ,r-seqlogo)
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("r-xvector" ,r-xvector)))
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(home-page "https://bioconductor.org/packages/motifRG")
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(synopsis "Discover motifs in high throughput sequencing data")
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(description
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"This package provides tools for discriminative motif discovery in high
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throughput genetic sequencing data sets using regression methods.")
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(license license:artistic2.0)))
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(define-public r-zlibbioc
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(define-public r-zlibbioc
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(package
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(package
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(name "r-zlibbioc")
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(name "r-zlibbioc")
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