gnu: Remove python2-pbcore.
* gnu/packages/bioinformatics.scm (python2-pbcore): Delete variable.
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@ -5285,39 +5285,6 @@ interrupted by stop codons. OrfM finds and prints these ORFs.")
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(home-page "https://github.com/wwood/OrfM")
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(home-page "https://github.com/wwood/OrfM")
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(license license:lgpl3+)))
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(license license:lgpl3+)))
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(define-public python2-pbcore
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(package
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(name "python2-pbcore")
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(version "1.2.10")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "pbcore" version))
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(sha256
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(base32
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"1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2 ;pbcore < 2.0 requires Python 2.7
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#:phases (modify-phases %standard-phases
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(add-after 'unpack 'remove-sphinx-dependency
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(lambda _
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;; Sphinx is only required for documentation tests, which
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;; we do not run; furthermore it depends on python2-sphinx
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;; which is no longer maintained.
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(substitute* "requirements-dev.txt"
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(("^sphinx") ""))
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#t)))))
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(propagated-inputs
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(list python2-cython python2-numpy python2-pysam python2-h5py))
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(native-inputs
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(list python2-nose python2-pyxb))
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(home-page "https://pacificbiosciences.github.io/pbcore/")
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(synopsis "Library for reading and writing PacBio data files")
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(description
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"The pbcore package provides Python APIs for interacting with PacBio data
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files and writing bioinformatics applications.")
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(license license:bsd-3)))
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(define-public prank
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(define-public prank
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(package
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(package
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(name "prank")
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(name "prank")
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