gnu: Add r-aneufinder.

* gnu/packages/bioconductor.scm (r-aneufinder): New variable.
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Roel Janssen 2021-05-26 09:13:54 +02:00
parent 189311660b
commit b84ead8c04
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@ -950,6 +950,48 @@ All datasets are restricted to protein coding genes.")
(description "This package contains data used by @code{AneuFinder}.")
(license license:artistic2.0)))
(define-public r-aneufinder
(package
(name "r-aneufinder")
(version "1.18.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "AneuFinder" version))
(sha256
(base32
"1j2n6i3ja63i98y1mbb8ndn6cn2a0pw97zz6al4myycnv55w49j3"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-genomicranges" ,r-genomicranges)
("r-aneufinderdata" ,r-aneufinderdata)
("r-ecp" ,r-ecp)
("r-foreach" ,r-foreach)
("r-doparallel" ,r-doparallel)
("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)
("r-genomeinfodb" ,r-genomeinfodb)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-bamsignals" ,r-bamsignals)
("r-dnacopy" ,r-dnacopy)
("r-biostrings" ,r-biostrings)
("r-genomicalignments" ,r-genomicalignments)
("r-ggplot2" ,r-ggplot2)
("r-reshape2" ,r-reshape2)
("r-ggdendro" ,r-ggdendro)
("r-ggrepel" ,r-ggrepel)
("r-reordercluster" ,r-reordercluster)
("r-mclust" ,r-mclust)
("r-cowplot" ,r-cowplot)))
(home-page "https://bioconductor.org/packages/AneuFinder/")
(synopsis "Copy number variation analysis in single-cell-sequencing data")
(description "This package implements functions for copy number variant
calling, plotting, export and analysis from whole-genome single cell
sequencing data.")
(license license:artistic2.0)))
(define-public r-arrmdata
(package
(name "r-arrmdata")