gnu: Add r-psiplot.
* gnu/packages/bioinformatics.scm (r-psiplot): New variable.
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@ -14755,3 +14755,34 @@ ATAC-seq results. It was written to make it easier to spot differences that
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might be caused by ATAC-seq library prep or sequencing. The main program,
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might be caused by ATAC-seq library prep or sequencing. The main program,
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@code{ataqv}, examines aligned reads and reports some basic metrics.")
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@code{ataqv}, examines aligned reads and reports some basic metrics.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public r-psiplot
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(package
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(name "r-psiplot")
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(version "2.3.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/kcha/psiplot.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "08438h16cfry5kqh3y9hs8q1b1a8bxhblsm75knviz5r6q0n1jxh"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-mass" ,r-mass)
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("r-dplyr" ,r-dplyr)
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("r-tidyr" ,r-tidyr)
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("r-purrr" ,r-purrr)
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("r-readr" ,r-readr)
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("r-magrittr" ,r-magrittr)
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("r-ggplot2" ,r-ggplot2)))
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(home-page "https://github.com/kcha/psiplot")
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(synopsis "Plot percent spliced-in values of alternatively-spliced exons")
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(description
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"PSIplot is an R package for generating plots of @dfn{percent
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spliced-in} (PSI) values of alternatively-spliced exons that were computed by
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vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
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are generated using @code{ggplot2}.")
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(license license:expat)))
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