gnu: diamond: Update to 2.1.6.
* gnu/packages/bioinformatics.scm (diamond): Update to 2.1.6. [arguments]: Do not disable tests; pass configure flag to avoid SSE4 and AVX2 in the interest of compatibility. [license]: Set to GPLv3+.
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@ -4212,7 +4212,7 @@ bases are detected.")
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(define-public diamond
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(package
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(name "diamond")
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(version "0.9.30")
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(version "2.1.6")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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@ -4221,18 +4221,11 @@ bases are detected.")
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0k6f3kb6cniw11xw6763kkbs1sl0yack7xsy7q5fl5v170ssphq4"))))
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"0kb17jwlsrvgswfahzznrffv1i6ybwwmq99qs7iga5yzbx64jp6q"))))
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(build-system cmake-build-system)
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(arguments
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'(#:tests? #f ; no "check" target
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'remove-native-compilation
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(lambda _
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(substitute* "CMakeLists.txt" (("-march=native") ""))
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#t)))))
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(inputs
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(list zlib))
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(list #:configure-flags '(list "-DX86=OFF"))) ;avoid SSE4 and AVX2
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(inputs (list zlib))
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(home-page "https://github.com/bbuchfink/diamond")
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(synopsis "Accelerated BLAST compatible local sequence aligner")
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(description
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@ -4241,7 +4234,7 @@ translated DNA query sequences against a protein reference database (BLASTP
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and BLASTX alignment mode). The speedup over BLAST is up to 20,000 on short
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reads at a typical sensitivity of 90-99% relative to BLAST depending on the
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data and settings.")
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(license license:agpl3+)))
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(license license:gpl3+)))
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(define-public discrover
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(package
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