gnu: Add r-italics.

* gnu/packages/bioconductor.scm (r-italics): New variable.
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Mădălin Ionel Patrașcu 2023-02-02 03:26:51 +01:00 committed by Ricardo Wurmus
parent b065772152
commit 8dc953fe5d
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@ -4536,6 +4536,37 @@ domains etc.) from quantification of all types of RNASeq by tools such as
Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.")
(license license:gpl2+)))
(define-public r-italics
(package
(name "r-italics")
(version "2.58.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ITALICS" version))
(sha256
(base32 "0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs"))))
(properties `((upstream-name . "ITALICS")))
(build-system r-build-system)
(propagated-inputs
(list r-affxparser
r-dbi
r-glad
r-italicsdata
r-oligo
r-oligoclasses
r-pd-mapping50k-xba240))
(home-page "http://bioinfo.curie.fr")
(synopsis "Normalizing of the Affymetrix GeneChip human mapping")
(description
"This package provides tools for normalizing and analyzing of GeneChip
Mapping 100K and 500K Set. Affymetrix GeneChip Human Mapping 100K and 500K
Set allows the DNA copy number mea- surement of respectively 2× 50K and 2×
250K SNPs along the genome. Their high density allows a precise localization
of genomic alterations and makes them a powerful tool for cancer and copy
number polymorphism study.")
(license license:gpl2)))
;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor.
(define-public r-absfiltergsea
(package