gnu: Add r-millefy.
* gnu/packages/bioinformatics.scm (r-millefy): New variable.
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;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net>
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;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net>
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;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
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;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
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;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
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;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
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;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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;;; Copyright © 2018, 2019, 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
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;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
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;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
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;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
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@ -7525,6 +7525,41 @@ of transcriptional heterogeneity among single cells.")
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;; See https://github.com/hms-dbmi/scde/issues/38
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;; See https://github.com/hms-dbmi/scde/issues/38
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(license license:gpl2)))
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(license license:gpl2)))
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(define-public r-millefy
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(package
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(name "r-millefy")
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(version "0.1.9-beta")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/yuifu/millefy")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0z2y0x99f761pxvg6n37cmnyrnj699jhjk43pvk05sa86iykgizl"))))
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(properties `((upstream-name . "millefy")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-data-table
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r-destiny
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r-dplyr
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r-genomicranges
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r-iranges
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r-magrittr
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r-rsamtools
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r-rtracklayer
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r-tidyr))
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(home-page "https://github.com/yuifu/millefy")
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(synopsis "Make millefy plot with single-cell RNA-seq data")
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(description "@code{Millefy} is a tool for visualizing read coverage of
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@dfn{scRNA-seq}(single-cell RNA sequencing) datasets in genomic contexts. By
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dynamically and automatically reorder single cells based on locus-specific
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pseudo time, @code{Millefy} highlights cell-to-cell heterogeneity in read coverage
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of scRNA-seq data.")
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(license license:expat)))
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(define-public r-misha
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(define-public r-misha
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(package
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(package
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(name "r-misha")
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(name "r-misha")
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