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gnu: r-erma: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-erma): Move from here...
* gnu/packages/bioconductor.scm (r-erma): ...to here.
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zimoun 2020-12-23 19:06:31 +01:00 committed by Ricardo Wurmus
parent 8f1237c350
commit 8c2b7c9a2a
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2 changed files with 40 additions and 40 deletions
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40
gnu/packages/bioconductor.scm
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@ -9241,6 +9241,46 @@ preprocessing of cytometry data, including i) normalization using bead
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
(license license:gpl2+)))
(define-public r-erma
(package
(name "r-erma")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "erma" version))
(sha256
(base32
"1k2j1xhv0vwn45xmh8ds0gz812px5hnpgzvp37ngsdn4j5ai1l0k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfiles" ,r-genomicfiles)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-homo-sapiens" ,r-homo-sapiens)
("r-iranges" ,r-iranges)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-shiny" ,r-shiny)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/erma")
(synopsis "Epigenomic road map adventures")
(description
"The epigenomics road map describes locations of epigenetic marks in DNA
from a variety of cell types. Of interest are locations of histone
modifications, sites of DNA methylation, and regions of accessible chromatin.
This package presents a selection of elements of the road map including
metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines
by Ernst and Kellis.")
(license license:artistic2.0)))
(define-public r-gqtlstats
(package
(name "r-gqtlstats")

40
gnu/packages/bioinformatics.scm
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@ -10655,46 +10655,6 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.")
several related annotation packages.")
(license license:artistic2.0)))
(define-public r-erma
(package
(name "r-erma")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "erma" version))
(sha256
(base32
"1k2j1xhv0vwn45xmh8ds0gz812px5hnpgzvp37ngsdn4j5ai1l0k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfiles" ,r-genomicfiles)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-homo-sapiens" ,r-homo-sapiens)
("r-iranges" ,r-iranges)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-shiny" ,r-shiny)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/erma")
(synopsis "Epigenomic road map adventures")
(description
"The epigenomics road map describes locations of epigenetic marks in DNA
from a variety of cell types. Of interest are locations of histone
modifications, sites of DNA methylation, and regions of accessible chromatin.
This package presents a selection of elements of the road map including
metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines
by Ernst and Kellis.")
(license license:artistic2.0)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))