gnu: Add HTSeq.
* gnu/packages/bioinformatics.scm (htseq): New variable.
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@ -311,6 +311,30 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
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particular, reads spanning multiple exons.")
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(license license:gpl3+)))
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(define-public htseq
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(package
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(name "htseq")
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(version "0.6.1")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://pypi.python.org/packages/source/H/HTSeq/HTSeq-"
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version ".tar.gz"))
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(sha256
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(base32
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"1i85ppf2j2lj12m0x690qq5nn17xxk23pbbx2c83r8ayb5wngzwv"))))
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(build-system python-build-system)
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(arguments `(#:python ,python-2)) ; only Python 2 is supported
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(inputs
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`(("python-numpy" ,python2-numpy)
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("python-setuptools" ,python2-setuptools)))
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(home-page "http://www-huber.embl.de/users/anders/HTSeq/")
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(synopsis "Analysing high-throughput sequencing data with Python")
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(description
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"HTSeq is a Python package that provides infrastructure to process data
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from high-throughput sequencing assays.")
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(license license:gpl3+)))
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(define-public rseqc
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(package
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(name "rseqc")
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