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gnu: Add python-schema-salad.

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* gnu/packages/bioinformatics.scm (python-schema-salad): New variable.
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Efraim Flashner 2020-11-23 10:58:29 +02:00
parent 01b6864125
commit 7face25953
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@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016, 2020 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
@ -18,6 +18,7 @@
;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com>
;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -112,10 +113,12 @@
#:use-module (gnu packages popt)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-compression)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rdf)
#:use-module (gnu packages readline)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
@ -2579,6 +2582,42 @@ accessing bigWig files.")
(define-public python2-pybigwig
(package-with-python2 python-pybigwig))
(define-public python-schema-salad
(package
(name "python-schema-salad")
(version "7.0.20200811075006")
(source
(origin
(method url-fetch)
(uri (pypi-uri "schema-salad" version))
(sha256
(base32
"0wanbwmqb189x1m0vacnhpivfsr8rwbqknngivzxxs8j46yj80bg"))))
(build-system python-build-system)
(propagated-inputs
`(("python-cachecontrol" ,python-cachecontrol-0.11)
("python-lockfile" ,python-lockfile)
("python-mistune" ,python-mistune)
("python-rdflib" ,python-rdflib)
("python-rdflib-jsonld" ,python-rdflib-jsonld)
("python-requests" ,python-requests)
("python-ruamel.yaml" ,python-ruamel.yaml)
("python-typing-extensions" ,python-typing-extensions)))
(native-inputs
`(("python-pytest" ,python-pytest)
("python-pytest-runner" ,python-pytest-runner)))
(home-page "https://github.com/common-workflow-language/schema_salad")
(synopsis "Schema Annotations for Linked Avro Data (SALAD)")
(description
"Salad is a schema language for describing JSON or YAML structured linked
data documents. Salad schema describes rules for preprocessing, structural
validation, and hyperlink checking for documents described by a Salad schema.
Salad supports rich data modeling with inheritance, template specialization,
object identifiers, object references, documentation generation, code
generation, and transformation to RDF. Salad provides a bridge between document
and record oriented data modeling and the Semantic Web.")
(license license:asl2.0)))
(define-public python-dendropy
(package
(name "python-dendropy")